Aqp2 (aquaporin 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Aqp2 (aquaporin 2) Chinchilla lanigera
Analyze
Symbol: Aqp2
Name: aquaporin 2
RGD ID: 8866344
Description: ENCODES a protein that exhibits actin binding (ortholog); glycerol transmembrane transporter activity (ortholog); PDZ domain binding (ortholog); INVOLVED IN actin filament depolymerization (ortholog); actin filament organization (ortholog); cell volume homeostasis (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH cardiomyopathy (ortholog); diabetes insipidus (ortholog); diabetic ketoacidosis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); clathrin-coated vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: aquaporin 2 (collecting duct); aquaporin-2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547547,064 - 555,958 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955547547,770 - 555,764 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Aqp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547547,064 - 555,958 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955547547,770 - 555,764 (+)NCBIChiLan1.0ChiLan1.0
AQP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381249,950,737 - 49,958,878 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1249,950,737 - 49,958,878 (+)EnsemblGRCh38hg38GRCh38
GRCh371250,344,520 - 50,352,661 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,630,796 - 48,638,931 (+)NCBINCBI36Build 36hg18NCBI36
Build 341248,630,795 - 48,638,929NCBI
Celera1249,140,628 - 49,148,768 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1247,376,094 - 47,384,234 (+)NCBIHuRef
CHM1_11250,310,689 - 50,318,825 (+)NCBICHM1_1
T2T-CHM13v2.01249,913,728 - 49,921,869 (+)NCBIT2T-CHM13v2.0
Aqp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,476,937 - 99,482,426 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1599,476,936 - 99,482,428 (+)EnsemblGRCm39 Ensembl
GRCm381599,579,056 - 99,584,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,579,055 - 99,584,547 (+)EnsemblGRCm38mm10GRCm38
MGSCv371599,409,487 - 99,414,976 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361599,407,106 - 99,412,579 (+)NCBIMGSCv36mm8
Celera15101,734,478 - 101,739,943 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
Aqp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,590,286 - 132,595,321 (+)NCBIGRCr8
mRatBN7.27130,711,433 - 130,716,468 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7130,711,413 - 130,716,468 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7132,515,018 - 132,520,055 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07134,740,599 - 134,745,636 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07134,653,120 - 134,658,157 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07141,237,802 - 141,242,837 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,237,768 - 141,245,165 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X115,742,312 - 115,747,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,325,855 - 138,330,891 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17138,402,285 - 138,406,831 (+)NCBI
Celera7127,193,026 - 127,197,996 (+)NCBICelera
Cytogenetic Map7q36NCBI
AQP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21044,229,814 - 44,238,063 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11244,226,576 - 44,234,741 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01238,796,300 - 38,804,559 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11239,690,289 - 39,698,397 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,690,289 - 39,698,397 (-)Ensemblpanpan1.1panPan2
AQP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,743,127 - 4,750,907 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,743,127 - 4,750,907 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,505,816 - 41,513,596 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,793,697 - 4,801,488 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,793,697 - 4,801,488 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,758,676 - 4,766,460 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,748,491 - 4,756,279 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02741,900,444 - 41,908,227 (+)NCBIUU_Cfam_GSD_1.0
Aqp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,528,160 - 65,536,193 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365127,628,495 - 7,634,107 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365127,628,677 - 7,633,344 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AQP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl515,863,486 - 15,868,565 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1515,862,739 - 15,868,565 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2516,090,821 - 16,095,902 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AQP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,179,783 - 46,188,631 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1146,180,387 - 46,188,712 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037199,932,873 - 199,941,797 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aqp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248162,335,471 - 2,340,828 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248162,332,477 - 2,340,797 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000001124   ⟹   ENSCLAP00000001083
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955547547,064 - 555,958 (+)Ensembl
RefSeq Acc Id: XM_005411855   ⟹   XP_005411912
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955547547,770 - 553,198 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411856   ⟹   XP_005411913
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955547547,810 - 552,919 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508504   ⟹   XP_013363958
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955547547,806 - 555,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508505   ⟹   XP_013363959
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955547547,810 - 553,336 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005411912 (Get FASTA)   NCBI Sequence Viewer  
  XP_005411913 (Get FASTA)   NCBI Sequence Viewer  
  XP_013363958 (Get FASTA)   NCBI Sequence Viewer  
  XP_013363959 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001083
  ENSCLAP00000001083.1
RefSeq Acc Id: XP_005411912   ⟸   XM_005411855
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005411913   ⟸   XM_005411856
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UNK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363958   ⟸   XM_013508504
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013363959   ⟸   XM_013508505
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSCLAP00000001083   ⟸   ENSCLAT00000001124


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000834 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001124 ENTREZGENE
  ENSCLAT00000001124.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1080.10 UniProtKB/TrEMBL
InterPro Aquaporin-like UniProtKB/TrEMBL
  Aquaporin_transptr UniProtKB/TrEMBL
  MIP UniProtKB/TrEMBL
  MIP_CS UniProtKB/TrEMBL
NCBI Gene Aqp2 ENTREZGENE
PANTHER AQUAPORIN-2 UniProtKB/TrEMBL
  PTHR19139 UniProtKB/TrEMBL
Pfam MIP UniProtKB/TrEMBL
PRINTS AQUAPORIN2 UniProtKB/TrEMBL
  MINTRINSICP UniProtKB/TrEMBL
PROSITE MIP UniProtKB/TrEMBL
Superfamily-SCOP SSF81338 UniProtKB/TrEMBL
UniProt A0A8C2UNK5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Aqp2  aquaporin 2    aquaporin 2 (collecting duct)  Symbol and/or name change 5135510 APPROVED