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Gene: Col1a2 (collagen type I alpha 2 chain) Chinchilla lanigera

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Symbol:

Col1a2

Name:

collagen type I alpha 2 chain

RGD ID:

8853461

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); platelet-derived growth factor binding (ortholog); protease binding (ortholog); INVOLVED IN blood vessel development (ortholog); bone mineralization (ortholog); cellular response to aldehyde (ortholog); PARTICIPATES IN endothelin signaling pathway; interleukin-4 signaling pathway; syndecan signaling pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); ARTERIAL DISSECTION (ortholog); Bruck Syndrome 1 (ortholog); FOUND IN collagen trimer (ortholog); collagen type I trimer (ortholog); collagen-containing extracellular matrix (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

collagen alpha-2(I) chain; collagen, type I, alpha 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	11,128,112 - 11,163,302 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955432	11,127,961 - 11,164,145 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Acute Liver Failure (ISO)

ARTERIAL DISSECTION (ISO)

Bruck Syndrome 1 (ISO)

Combined Osteogenesis Imperfecta and Ehlers-Danlos Syndrome 2 (ISO)

connective tissue disease (ISO)

dentinogenesis imperfecta (ISO)

Developmental Disabilities (ISO)

Diabetic Nephropathies (ISO)

Ehlers-Danlos syndrome (ISO)

Ehlers-Danlos syndrome arthrochalasia type 1 (ISO)

Ehlers-Danlos syndrome arthrochalasia type 2 (ISO)

Ehlers-Danlos syndrome cardiac valvular type (ISO)

Ehlers-Danlos syndrome classic type 1 (ISO)

Ehlers-Danlos syndrome classic type 2 (ISO)

Experimental Liver Cirrhosis (ISO)

Fetal Nutrition Disorders (ISO)

Fibrosis (ISO)

genetic disease (ISO)

heart valve disease (ISO)

hypothyroidism (ISO)

intracranial aneurysm (ISO)

liver cirrhosis (ISO)

Marfan syndrome (ISO)

muscular atrophy (ISO)

myoclonic dystonia 11 (ISO)

oral submucous fibrosis (ISO)

osteoarthritis (ISO)

osteochondrodysplasia (ISO)

osteogenesis imperfecta (ISO)

osteogenesis imperfecta type 1 (ISO)

osteogenesis imperfecta type 2 (ISO)

osteogenesis imperfecta type 3 (ISO)

osteogenesis imperfecta type 4 (ISO)

osteoporosis (ISO)

pleomorphic xanthoastrocytoma (ISO)

Postmenopausal Osteoporosis (ISO)

pulmonary fibrosis (ISO)

Spontaneous Abortions (ISO)

systemic scleroderma (ISO)

Transplant Rejection (ISO)

ureteral obstruction (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blood vessel development (ISO)

bone mineralization (ISO)

cellular response to aldehyde (ISO)

cellular response to amino acid stimulus (ISO)

cellular response to retinoic acid (ISO)

cellular response to thyroid hormone stimulus (ISO)

collagen fibril organization (ISO)

collagen metabolic process (ISO)

extracellular matrix assembly (ISO)

protein heterotrimerization (ISO)

regulation of blood pressure (ISO)

response to norepinephrine (ISO)

Rho protein signal transduction (ISO)

skeletal system development (ISO)

skin morphogenesis (ISO)

transforming growth factor beta receptor signaling pathway (ISO)

Cellular Component

collagen trimer (ISO)

collagen type I trimer (ISO)

collagen-containing extracellular matrix (ISO)

extracellular space (ISO)

Molecular Function

identical protein binding (ISO)

platelet-derived growth factor binding (ISO)

protease binding (ISO)

protein binding (ISO)

protein-macromolecule adaptor activity (ISO)

SMAD binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

endothelin signaling pathway (ISO)

interleukin-4 signaling pathway (ISO)

syndecan signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Col1a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	11,128,112 - 11,163,302 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955432	11,127,961 - 11,164,145 (+)	NCBI	ChiLan1.0	ChiLan1.0

COL1A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	94,394,895 - 94,431,227 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	94,394,895 - 94,431,227 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	94,024,207 - 94,060,539 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	93,861,809 - 93,898,480 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	93,668,523 - 93,705,195	NCBI
Celera	7	88,722,142 - 88,758,790 (+)	NCBI		Celera
Cytogenetic Map	7	q21.3	NCBI
HuRef	7	88,631,579 - 88,668,235 (+)	NCBI		HuRef
CHM1_1	7	93,953,972 - 93,990,650 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	95,630,848 - 95,667,187 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	93,353,052 - 93,389,700 (+)	NCBI

Col1a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	4,505,618 - 4,541,543 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	4,504,814 - 4,541,544 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	4,505,618 - 4,541,543 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	4,504,814 - 4,541,544 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	4,455,697 - 4,491,543 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	4,455,761 - 4,490,730 (+)	NCBI		MGSCv36	mm8
Celera	6	4,648,226 - 4,684,066 (+)	NCBI		Celera
Cytogenetic Map	6	A1	NCBI
cM Map	6	1.81	NCBI

Col1a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	33,518,557 - 33,553,484 (+)	NCBI		GRCr8
mRatBN7.2	4	32,563,938 - 32,598,868 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	32,563,381 - 32,598,867 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	37,550,562 - 37,585,439 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	33,476,688 - 33,511,565 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	31,846,998 - 31,881,902 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	31,534,225 - 31,569,152 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	31,534,225 - 31,569,151 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	29,442,828 - 29,478,616 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	4	31,405,253 - 31,440,180 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	29,393,645 - 29,428,572 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	29,431,383 - 29,467,014 (+)	NCBI
Celera	4	27,947,892 - 27,982,658 (+)	NCBI		Celera
Cytogenetic Map	4	q21	NCBI

COL1A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	112,232,392 - 112,268,547 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	160,497,349 - 160,533,186 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	86,344,657 - 86,381,282 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	99,935,185 - 99,971,810 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	99,935,185 - 99,971,803 (+)	Ensembl	panpan1.1		panPan2

COL1A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	19,883,731 - 19,919,527 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	19,883,868 - 19,919,527 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	19,443,112 - 19,478,898 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	19,699,099 - 19,734,901 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	19,699,098 - 19,734,902 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	19,850,793 - 19,886,662 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	19,585,955 - 19,621,759 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	19,843,097 - 19,878,889 (+)	NCBI		UU_Cfam_GSD_1.0

Col1a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	33,176,893 - 33,212,967 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936585	5,651,180 - 5,685,923 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936585	5,650,322 - 5,686,393 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COL1A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	74,173,931 - 74,210,397 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	74,174,484 - 74,210,407 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	81,357,192 - 81,393,118 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COL1A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	54,602,780 - 54,639,832 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	54,602,398 - 54,632,780 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	49,682,896 - 49,719,954 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Col1a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624813	1,174,224 - 1,209,616 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624813	1,174,071 - 1,209,929 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005388041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01030942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01002045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000013586 ⟹ ENSCLAP00000013433

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955432	11,128,112 - 11,163,302 (+)	Ensembl

RefSeq Acc Id:

XM_005388041 ⟹ XP_005388098

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955432	11,127,961 - 11,164,145 (+)	NCBI

Sequence:

show sequence

AGATCCGGGCTTTATTATTTTAGCACCACGGCGGCAGGAGGTCTCGGCTAAGTTGGAGGTGCTG
CCGCCACTGCATGCCTGCGCCCGCCAGGTGATCCTCGCCGTGACCCGGGCCTGCGACACAAGGA
GTCTGCATGTCTAAGTGGTAGACATGCTCAGCTTTGTGGATACGCGGACTGTGTTGCTGCTCGC
AGTCACCTCGTGCCTAGCAGCATGCCAATCTTTACAAATGGAAACTCTGAAAAAGGGCCCCACT
GGAGATAGAGGACCACGTGGAGAAAGGGGTCCACCCGGCAACCCAGGCAGAGATGGTGAAGATG
GTCCCCGTGGCCCTCGTGGGCCACCTGGCCCTCCTGGCCCCCCTGGTCTTGGTGGGAACTTTGC
TGCTCAGTATGATGGCAAAGGAGTGGGACTTGGCCCTGGACCAATGGGTTTAATGGGACCGAGA
GGACCTCCTGGTGCTGTTGGTGCCCCTGGACCTCAAGGTTTCCAAGGACCTGCTGGTGAGCCTG
GTGAGCCCGGTCAAACTGGTCCTGCAGGTTCCCGTGGTCCAGCTGGCCCTCCTGGCAAGGCTGG
TGAAGATGGTCACCCCGGAAAACCTGGACGGCCTGGTGAGAGAGGCGTTGTTGGGCCACAGGGT
GCTCGTGGATTCCCTGGAACTCCTGGACTTCCTGGCTTCAAAGGCCCTAGGGGACACAACGGTA
TGGATGGATTGAAGGGACAGGCTGGCGCTCCAGGCGTGAAGGGTGAGCCCGGTGCCCCTGGTGA
AAATGGAACTCCAGGTCAAGCGGGAGCTCGTGGCCTTCCTGGTGAGAGAGGACGTGTTGGTGCC
CCTGGACCAGCTGGCGCCCGTGGCAGTGATGGCAGTGTCGGTCCTGTGGGTCCTGCTGGTCCCA
TTGGAGCTGCCGGCCCTCCAGGCTTCCCAGGAGCCCCTGGTCCCAAGGGTGAAATTGGGCCCGT
GGGTAACACTGGTCCTTCTGGCCCTGCGGGTCCCCGTGGTGAAATTGGTCTTCCCGGTCTTTCT
GGCCCTGTTGGACCTCCTGGCAACCCTGGAGCTAATGGCCTTGCTGGTTCTAAGGGCGCAGCTG
GTCTTCCTGGTGTGGCTGGAGCTCCTGGCCTCCCTGGTCCCCGAGGTATTCCTGGCCCCCCTGG
TGCTGCCGGTGCTACTGGTGCCAGAGGACTTGTTGGTGATCCTGGTCCAGCTGGTTCCAAAGGA
GAAACTGGAAACAAGGGCGAGCCTGGCTCTGCTGGAGCCCAAGGTCCTCCTGGTCCCAGTGGTG
AAGAAGGAAAGAGAGGCTCTAATGGTGAAGCTGGATCTGCTGGACCCCCGGGACCTCCTGGGCT
GAGAGGCTCTCCTGGATCTCGTGGTCTTCCTGGAGCTGATGGCAGAGCTGGTGTCATGGGCCCT
CCTGGTAGCCGTGGCGCAACCGGCCCTGCTGGAGTCCGAGGCCCCAGTGGAGATGCCGGTCGCC
CTGGGGAGCCTGGTCTCATGGGACCCCGAGGTCTTCCTGGTTCCCCTGGAAATGTTGGCCCAGC
TGGTAAAGAAGGGCCAGTGGGTCTCCCTGGAATCGATGGCAGGCCTGGTCCAATTGGCCCGGCT
GGTGCAAGAGGAGAAGCTGGTAACATCGGATTCCCTGGACCCAAAGGCCCCACTGGTGATCCTG
GCAAAAGTGGTGATAAAGGTCATCCTGGTCTTGCTGGTGCTCGGGGTGCTCCCGGTCCTGATGG
AAACAACGGTGCTCAGGGACCTCCTGGACCCCAGGGTGTCCAAGGTGGCAAAGGTGAACAGGGT
CCTGCTGGTCCTCCAGGTTTCCAGGGTCTGCCTGGCCCTTCAGGTCCAACTGGTGAAGTTGGCA
AACCAGGAGAAAGGGGTCTCCCTGGTGAATTTGGGCTCCCTGGTCCTGCTGGTGCAAGAGGGGA
ACGTGGTCCCCCAGGCGAGAGTGGTGCTGTCGGTCCCTCTGGTCCCATTGGAAGCCGAGGTCCT
TCTGGACCCCCAGGACCTGATGGAAACAAGGGTGAACCCGGTGTGGTTGGTGCTCCTGGCACTG
CTGGTGCATCTGGTCCTGGTGGCCTCCCAGGAGAGAGAGGTGCTGCTGGCATCCCTGGAGGCAA
AGGAGAAAAGGGTGAAACTGGACACAGAGGTGAACCCGGTAACACTGGCCGGGATGGTGCTCGT
GGTGCTCCTGGTGCTATAGGTGCCCCTGGTCCAGCTGGAGCCACAGGTGACCGGGGTGAAGCTG
GTGCCGCTGGTCCTGCTGGCCCTGCTGGTCCTCGGGGTAGCCCTGGTGAACGTGGTGAAGTTGG
TCCTGCTGGCCCCAATGGATTTGCTGGTCCCGCTGGTGCTGCTGGTCAACCTGGTGCTAAAGGA
GAGAGAGGCACCAAGGGGCCTAAGGGTGAAAATGGTGTTGTTGGTCCCACCGGTCCTGTCGGAG
CTGCAGGCCCATCTGGTCCAAATGGTCCCCCTGGTCCTGCCGGAAGTCGTGGTGATGGAGGTCC
CCCTGGTATGACTGGTTTCCCTGGTGCTGCTGGACGGACAGGTCCCCCTGGACCATCTGGTATC
ACCGGCCCCCCTGGTCCCCCTGGTCCTGCTGGTAAGGAAGGAATCCGAGGTCCTCGTGGTGACC
AAGGTCCAGTGGGTCGAGCTGGTGATACAGGTGCAGGTGGCCCCCCTGGCTTTGCTGGAGAGAA
AGGTCCCTCTGGAGAGGCTGGTACTGCTGGACCCCCTGGAACCCCAGGCCCTCAGGGTCTTCTT
GGTGCTCCTGGTATTCTGGGTCTCCCCGGCTCTAGAGGTGAACGTGGTCTGCCAGGTATCGCTG
GTGCTTCGGGTGAGCCTGGTCCTCTGGGCCTTTCAGGCCCTCCTGGGGCCCGTGGTCCCCCTGG
TAACGTGGGCAGTCCCGGAGTCAACGGTGCTCCCGGAGAAGCTGGTCGTGATGGCAATCCTGGC
AGTGATGGTCCCCCAGGTCGTGATGGTCAGCCTGGACACAAGGGAGAGCGCGGTTACCCTGGCA
ACATCGGGCCCACTGGTGCTGCAGGTGCCCCTGGTCCTCACGGCCCTGTGGGTCCTGCTGGCAA
ACACGGAAACCGTGGTGAACCTGGTCCTGCTGGGTCTGTTGGTCCTGTCGGCGCCTTTGGTCCA
AGAGGTCCAACTGGCCCACAAGGCATCCGAGGTGACAAGGGAGAGCCTGGTGATAAAGGGCCCA
GAGGTCTTCCTGGCATGAAGGGACACAATGGACTGCAAGGTCTCCCTGGTCTCGCCGGTCAACA
TGGTGATCAAGGTGCTCCTGGCCCTGTGGGTCCTGCGGGTCCCAGGGGCCCTGCTGGTCCTTCT
GGTCCTGCAGGCAAAGATGGTCGCTCTGGACATCCTGGTGCTGTTGGACCTGCTGGTGTACGAG
GCTCTCAGGGTAGCCAAGGACCTGCGGGCCCTCCTGGTCCCCCTGGCCCCCCTGGTCCTCCTGG
TGCAAGTGGTGGTGGTTATGACTTCGGCTTCGATGGAGACTTCTACAGGGCTGACCAGCCCCGC
TCACCACCTTCTCTCAGACCAAAAGATTATGAAGTTGATGCTACTCTGAAGTCTCTCAACAACC
AGATCGAGACCCTTCTCACTCCTGAGGGCTCTAGGAAGAACCCCGCGCGCACATGCCGTGACCT
GAGACTCAGCCACCCAGAGTGGAGCAGTGGTTACTACTGGATTGACCCTAACCAAGGGTGTACT
ATGGATGCTATCAAAGTATACTGTGATTTCTCTACTGGTGAGACCTGTATCCGGGCCCAACCTG
AAACCGTCACACCCAAGACCTGGTACAGGAACTCCAAGACCAAGAAACATGTCTGGGTAGGAGA
AACTATCAATGGTGGTAGCCAGTTTGAATACAACACAGAAGGAGTGACCTCCAAGGAAATGGCC
ACTCAACTTGCCTTCATGCGCCTGCTGGCCAACCGCGCTTCCCAGAACATCACCTACCACTGCA
GGAACAGCATCGCCTACCTGGACGAGGAGACCGGCAGCCTGAATAAGGCTGTCATTCTGCAAGG
CTCCAATGATGTGGAGCTGGTCCCCGAGGGCAACAGCAGGTTCACTTACACTGTCCTCGTGGAT
GGCTGCTCTAAAAAGACAAATGAATGGGAGAAGACGATCATTGAATACAAAACAAACAAGCCAT
CCCGCCTGCCCTTCCTCGATATCGCACCTTTGGACATTGGTGATGCTGACCAAGAAATCCGTCT
GGATGTTGGCCCGGTCTGTTTCAAATAAATGAACTCAAACCTAAATTAAAAACCAAAAAAAAAA
GAAAACCTGAACAAACTCTCTCTTTGTCATTTCTTCTTCTTTTTTTAACTGAAAGCTGAATCCT
TCCACTTCTTCTGAACCATCTACTCGCTTTAATTGTGAACGAAACACAAGGACCAATCAGAGCA
TTGTGCAATACAATTCAATTAACTCCCTCCCTACAACCCCTCCCCAAAAGATTTAGAATTTTTT
TTTTCAACACTCTTACACCTCTTGTGGAAAATGTCAACCTTTGTAAGAAAACCAAAATAAAAAT
TGAAAAATAAAATAAAAACCATGAACATTCACACCACTTGTGGCTTCTGAATATCTTCCATAGA
GGGAAGTTTAAAACCCGAACTTCCAAAGGTTTAAACTACCTCAAAAGACTTTCCTGTGAGTGTG
ATCCTCACCAGGTGCTGACCTAGACAGACATGAACTGAGGTACTTGTTTTGTTCATAAACAAAG
GTGCTAATTAGCAGTATTTCAGATACTTGAAGAATGTTGATGGTGCTGGAAGAATTTGAGAAGA
AATACTCTTCTGTATTGAGTTGTGTTGTGTGGTTTTTAACATTTGACTTAACACCCATATTTGC
CATCTTATCCCCAACTAAAGATATACAGATCATCTGCCCCAAGTTGTTCTCTTCCTTAGATTCA
GCATTTCCTCTCTGCCAGTCTAATTTTCATTCTCTTCCTTGGTTCCAAAGAAGCCTTGTTTCTT
GAGCAAGCAGAAAAAATTAAATTGTACCTATTTTGTATATGTGAGATGTTTAAATAAATTGTGA
ACAAATGAAATAAAGCATGTTTGGTTTTCCAAAAGAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005388098	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000013433
	ENSCLAP00000013433.1

RefSeq Acc Id:

XP_005388098 ⟸ XM_005388041

- UniProtKB:

A0A8C2VDW8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLSFVDTRTVLLLAVTSCLAACQSLQMETLKKGPTGDRGPRGERGPPGNPGRDGEDGPRGPRGP
PGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGP
AGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGPRGHNGMDGLKGQA
GAPGVKGEPGAPGENGTPGQAGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGAAGPPG
FPGAPGPKGEIGPVGNTGPSGPAGPRGEIGLPGLSGPVGPPGNPGANGLAGSKGAAGLPGVAGA
PGLPGPRGIPGPPGAAGATGARGLVGDPGPAGSKGETGNKGEPGSAGAQGPPGPSGEEGKRGSN
GEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGATGPAGVRGPSGDAGRPGEPGLMG
PRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGARGEAGNIGFPGPKGPTGDPGKSGDKGH
PGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPTGEVGKPGERGLP
GEFGLPGPAGARGERGPPGESGAVGPSGPIGSRGPSGPPGPDGNKGEPGVVGAPGTAGASGPGG
LPGERGAAGIPGGKGEKGETGHRGEPGNTGRDGARGAPGAIGAPGPAGATGDRGEAGAAGPAGP
AGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGVVGPTGPVGAAGPSGPN
GPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGITGPPGPPGPAGKEGIRGPRGDQGPVGRAG
DTGAGGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGIAGASGEPGP
LGLSGPPGARGPPGNVGSPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGNIGPTGAA
GAPGPHGPVGPAGKHGNRGEPGPAGSVGPVGAFGPRGPTGPQGIRGDKGEPGDKGPRGLPGMKG
HNGLQGLPGLAGQHGDQGAPGPVGPAGPRGPAGPSGPAGKDGRSGHPGAVGPAGVRGSQGSQGP
AGPPGPPGPPGPPGASGGGYDFGFDGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTP
EGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPETVTPKTW
YRNSKTKKHVWVGETINGGSQFEYNTEGVTSKEMATQLAFMRLLANRASQNITYHCRNSIAYLD
EETGSLNKAVILQGSNDVELVPEGNSRFTYTVLVDGCSKKTNEWEKTIIEYKTNKPSRLPFLDI
APLDIGDADQEIRLDVGPVCFK

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Ensembl Acc Id:

ENSCLAP00000013433 ⟸ ENSCLAT00000013586

Protein Domains

Fibrillar collagen NC1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000009286	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000013586	ENTREZGENE
	ENSCLAT00000013586.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.1000	UniProtKB/TrEMBL
InterPro	Collagen	UniProtKB/TrEMBL
	Collagen_superfamily	UniProtKB/TrEMBL
	Fib_collagen_C	UniProtKB/TrEMBL
NCBI Gene	Col1a2	ENTREZGENE
PANTHER	COLLAGEN ALPHA	UniProtKB/TrEMBL
	ENDOSTATIN DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	COLFI	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
PROSITE	NC1_FIB	UniProtKB/TrEMBL
SMART	COLFI	UniProtKB/TrEMBL
UniProt	A0A8C2VDW8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Col1a2	collagen type I alpha 2 chain		collagen, type I, alpha 2	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)