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Gene: Rhag (Rh associated glycoprotein) Chinchilla lanigera

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Symbol:

Rhag

Name:

Rh associated glycoprotein

RGD ID:

8848071

Description:

ENCODES a protein that exhibits ammonium channel activity (ortholog); ankyrin binding (ortholog); carbon dioxide transmembrane transporter activity (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); carbon dioxide transmembrane transport (ortholog); carbon dioxide transport (ortholog); ASSOCIATED WITH hemolytic anemia (ortholog); overhydrated hereditary stomatocytosis (ortholog); Rh deficiency syndrome (ortholog); FOUND IN ankyrin-1 complex (ortholog); membrane (ortholog); plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ammonium transporter Rh type A; Rh-associated glycoprotein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	8,335,230 - 8,353,465 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	8,335,223 - 8,354,430 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hemolytic anemia (ISO)

overhydrated hereditary stomatocytosis (ISO)

Rh deficiency syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ammonium transmembrane transport (ISO)

carbon dioxide transmembrane transport (ISO)

carbon dioxide transport (ISO)

erythrocyte development (ISO)

inorganic cation transmembrane transport (ISO)

intracellular monoatomic ion homeostasis (ISO)

methylammonium transmembrane transport (ISO)

multicellular organismal-level iron ion homeostasis (ISO)

Cellular Component

ankyrin-1 complex (ISO)

membrane (ISO)

plasma membrane (ISO)

Molecular Function

ammonium channel activity (ISO)

ankyrin binding (ISO)

carbon dioxide transmembrane transporter activity (ISO)

leak channel activity (ISO)

methylammonium transmembrane transporter activity (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Rhag
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	8,335,230 - 8,353,465 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	8,335,223 - 8,354,430 (+)	NCBI	ChiLan1.0	ChiLan1.0

RHAG
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	49,605,175 - 49,636,839 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	49,605,175 - 49,636,839 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	49,572,888 - 49,604,552 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	49,680,847 - 49,712,546 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	49,680,850 - 49,712,511	NCBI
Celera	6	51,129,020 - 51,160,725 (-)	NCBI		Celera
Cytogenetic Map	6	p12.3	ENTREZGENE
HuRef	6	49,302,584 - 49,334,437 (-)	NCBI		HuRef
CHM1_1	6	49,575,821 - 49,607,510 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	49,447,195 - 49,478,851 (-)	NCBI		T2T-CHM13v2.0

Rhag
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	41,121,990 - 41,154,985 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	41,122,017 - 41,151,645 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	40,811,099 - 40,844,094 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	40,811,126 - 40,840,754 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	40,948,098 - 40,977,703 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	40,274,633 - 40,304,238 (+)	NCBI		MGSCv36	mm8
Celera	17	44,216,540 - 44,246,099 (+)	NCBI		Celera
Cytogenetic Map	17	B2	NCBI
cM Map	17	19.54	NCBI

Rhag
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	27,566,349 - 27,594,390 (-)	NCBI		GRCr8
mRatBN7.2	9	20,069,800 - 20,097,836 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	20,069,807 - 20,097,836 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	28,641,038 - 28,669,067 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	33,715,588 - 33,743,623 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	32,026,353 - 32,054,431 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	23,465,190 - 23,493,081 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	23,465,197 - 23,493,081 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	22,323,155 - 22,351,046 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	15,940,864 - 15,968,319 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	16,206,790 - 16,234,831 (-)	NCBI
Celera	9	17,746,824 - 17,774,869 (-)	NCBI		Celera
Cytogenetic Map	9	q13	NCBI

RHAG
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	64,089,124 - 64,120,783 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	59,953,964 - 59,985,644 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	49,174,973 - 49,206,667 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	50,436,504 - 50,468,203 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	50,436,307 - 50,468,250 (-)	Ensembl	panpan1.1		panPan2

RHAG
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	17,433,660 - 17,454,323 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	17,433,670 - 17,454,311 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	17,333,447 - 17,354,099 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	17,929,429 - 17,950,114 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	17,929,439 - 17,950,091 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	17,449,489 - 17,469,874 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	17,554,969 - 17,575,628 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	17,684,421 - 17,705,041 (-)	NCBI		UU_Cfam_GSD_1.0

Rhag
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	52,851,930 - 52,885,730 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	11,081,652 - 11,107,211 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	11,081,631 - 11,106,636 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RHAG
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	43,703,876 - 43,729,995 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	43,704,152 - 43,730,944 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	50,018,284 - 50,044,481 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RHAG
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	22,779,382 - 22,809,771 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	22,779,751 - 22,809,192 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	49,565,602 - 49,600,316 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rhag
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624799	14,446,288 - 14,467,106 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624799	14,445,270 - 14,467,161 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005377673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01011727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01082480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000013551 ⟹ ENSCLAP00000013398

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955411	8,335,230 - 8,353,465 (+)	Ensembl

RefSeq Acc Id:

XM_005377673 ⟹ XP_005377730

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955411	8,335,223 - 8,354,430 (+)	NCBI

Sequence:

show sequence

CACAAACATGAGGGTCACATTCCCTCTCATGGCCATAGGCCTGGAGGTTGCCATGATTGTTTTA
TTTTGGCTTTTTGTTCAGTATGAGGCAGATCAGACTATTTCACAGCAACTGAACACCACCAGGC
CAACAAAAATGGACAGCTTCGTTCAGCTGTATCCCCTATTTCAAGACGTGCACGTGATGATATT
CGTCGGCTTTGGCTTCCTCATGACCTTCCTGAAGAAGTACGGCTTCAGCAGTGTGGGCATCAAC
CTGCTCATTGCTGCGCTGGGCCTCCAGTGGGGCACCCTTGTACTGGGGCTGCTTCACGCCCGCG
GAGAGAAGTTTCACATCGGAATCAAAGAAATGATCAGCGCAGACTTTAGCACAGCCACGGTCCT
AATTTCTTTCGGCGCTGTCTTGGGAAAAACAAGCCCCATCCAAATGCTGATCATGACAATCCTA
GAAATCGCTGTTTTCGCTGCCAATGAGTTTCTGGTTGCTGAGATATTTGTGGCCTCGGATACTG
GGGCGTCAATGACGATCCATGCCTTTGGGGCCTACTTTGGCTTGGCTGTGGCAGGCGTCTTATA
TCGATCTGGCCTGAGGGAGGGGCATCACAACGAAGAGTCTGTGTACCACTCGGACATATTTGCA
ATGATCGGGACTCTTTTTCTATGGATATTTTGGCCCAGCTTCAACTCAGCCATTGCTGAACCTG
GAGACCACCAGTATAGAGCCATTGTCAACACGTACTTCTCACTGGCTGCCTGTGTGCTCACGGC
CTATGCGGTATCCAGCCTTGTCACGTATCGGGGCAAGCTCGAGATGGTTCACATCCAGAACGCG
ACCCTCGCGGGAGGAGTTGCTGTGGGCACCTGCGCGGACATGGACATCCAACCGTACATTGCTA
TGATCATTGGAAGCATCGCAGGACTCGTCTCTGTGCTTGGCTACAAGTGCCTGACTCCGTTCTG
TGCTACTACACTGAGGATCCACGACACATGCGGGGTACACAACCTACACGGCTTGCCCGGTGTG
GTAGGAGGTCTTGCAAGCATTGTGGCTATAGCTGTGGGAGTGTCTAATACGTCTACCATAGCCA
TGCAGGCAGCAGCACTGGGCTCGTCTATCGGAACAGCACTTGTTGGAGGTCTGGTTACAGGCTT
AATCCTAAAGATACCTTGCTGGAAACAGCCCTATGACGAGGACTGCTATGATGATTCTGTTTAC
TGGGAGGTCCCTGGGGGAAGAGAAGATGACAACCACTTCAAGGACCAAAAGCAGCTCAGACTTC
AAGTGTAACCACCATCCTGTGTTCCAGTTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005377730	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000013398
	ENSCLAP00000013398.1

RefSeq Acc Id:

XP_005377730 ⟸ XM_005377673

- UniProtKB:

A0A8C2VFX8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRVTFPLMAIGLEVAMIVLFWLFVQYEADQTISQQLNTTRPTKMDSFVQLYPLFQDVHVMIFVG
FGFLMTFLKKYGFSSVGINLLIAALGLQWGTLVLGLLHARGEKFHIGIKEMISADFSTATVLIS
FGAVLGKTSPIQMLIMTILEIAVFAANEFLVAEIFVASDTGASMTIHAFGAYFGLAVAGVLYRS
GLREGHHNEESVYHSDIFAMIGTLFLWIFWPSFNSAIAEPGDHQYRAIVNTYFSLAACVLTAYA
VSSLVTYRGKLEMVHIQNATLAGGVAVGTCADMDIQPYIAMIIGSIAGLVSVLGYKCLTPFCAT
TLRIHDTCGVHNLHGLPGVVGGLASIVAIAVGVSNTSTIAMQAAALGSSIGTALVGGLVTGLIL
KIPCWKQPYDEDCYDDSVYWEVPGGREDDNHFKDQKQLRLQV

hide sequence

Ensembl Acc Id:

ENSCLAP00000013398 ⟸ ENSCLAT00000013551

Protein Domains

Ammonium transporter AmtB-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000009257	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000013551	ENTREZGENE
	ENSCLAT00000013551.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.3430.10	UniProtKB/TrEMBL
InterPro	Ammonium/urea_transptr	UniProtKB/TrEMBL
	NH4_transpt_AmtB-like_dom	UniProtKB/TrEMBL
	RhesusRHD	UniProtKB/TrEMBL
NCBI Gene	Rhag	ENTREZGENE
PANTHER	AMMONIUM TRANSPORTER	UniProtKB/TrEMBL
	AMMONIUM TRANSPORTER RH TYPE A	UniProtKB/TrEMBL
Pfam	Ammonium_transp	UniProtKB/TrEMBL
PRINTS	RHESUSRHD	UniProtKB/TrEMBL
Superfamily-SCOP	Ammonium transporter	UniProtKB/TrEMBL
UniProt	A0A8C2VFX8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-09-26	Rhag	Rh associated glycoprotein		Rh-associated glycoprotein	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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