Panx1 (pannexin 1) - Rat Genome Database

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Gene: Panx1 (pannexin 1) Chinchilla lanigera
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Symbol: Panx1
Name: pannexin 1
RGD ID: 8837597
Description: ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); ATP transmembrane transporter activity (ortholog); INVOLVED IN ATP transport (ortholog); calcium ion transport (ortholog); cell-cell signaling (ortholog); PARTICIPATES IN neuron-to-neuron signaling pathway via the electrical synapse; ASSOCIATED WITH Acute Liver Failure (ortholog); autosomal recessive polycystic kidney disease (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN bleb (ortholog); endoplasmic reticulum (ortholog); gap junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pannexin-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955414401,188 - 448,470 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955414405,483 - 448,470 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Panx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955414401,188 - 448,470 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955414405,483 - 448,470 (-)NCBIChiLan1.0ChiLan1.0
PANX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381194,128,841 - 94,181,968 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1194,128,841 - 94,181,968 (+)EnsemblGRCh38hg38GRCh38
GRCh371193,862,007 - 93,915,134 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361193,501,742 - 93,554,786 (+)NCBINCBI36Build 36hg18NCBI36
Build 341193,501,741 - 93,554,783NCBI
Celera1191,149,894 - 91,202,958 (+)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1189,937,250 - 89,990,295 (+)NCBIHuRef
CHM1_11193,745,100 - 93,798,158 (+)NCBICHM1_1
T2T-CHM13v2.01194,045,617 - 94,098,852 (+)NCBIT2T-CHM13v2.0
Panx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39914,917,081 - 14,956,774 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl914,913,424 - 14,956,774 (-)EnsemblGRCm39 Ensembl
GRCm38915,005,785 - 15,045,478 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl915,002,128 - 15,045,478 (-)EnsemblGRCm38mm10GRCm38
MGSCv37914,810,229 - 14,849,922 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36914,756,178 - 14,795,871 (-)NCBIMGSCv36mm8
Celera912,286,408 - 12,326,356 (-)NCBICelera
Cytogenetic Map9A2NCBI
cM Map94.52NCBI
Panx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,128,783 - 20,171,200 (-)NCBIGRCr8
mRatBN7.2811,851,176 - 11,889,774 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl811,850,730 - 11,889,774 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx815,835,505 - 15,873,902 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0814,133,250 - 14,171,653 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0812,114,170 - 12,153,042 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0813,567,185 - 13,606,040 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,566,739 - 13,606,040 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0813,508,401 - 13,547,151 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4811,809,752 - 11,849,392 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1811,809,751 - 11,849,392 (-)NCBI
Celera813,320,676 - 13,358,794 (-)NCBICelera
Cytogenetic Map8q12NCBI
PANX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2994,981,323 - 95,136,371 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11196,074,806 - 96,126,726 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01189,142,686 - 89,295,972 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11192,628,760 - 92,685,118 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1192,628,760 - 92,685,109 (+)Ensemblpanpan1.1panPan2
PANX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1216,665,730 - 6,715,272 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl216,668,269 - 6,715,858 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha216,675,643 - 6,724,808 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0216,846,046 - 6,895,302 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl216,846,046 - 6,895,402 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1216,626,593 - 6,676,016 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0216,695,903 - 6,745,264 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0216,746,177 - 6,795,582 (-)NCBIUU_Cfam_GSD_1.0
Panx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494779,118,039 - 79,154,514 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936674736,905 - 773,412 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936674736,911 - 773,406 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PANX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl926,443,815 - 26,491,002 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1926,443,425 - 26,491,010 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2930,047,789 - 30,182,476 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PANX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1185,356,507 - 85,413,146 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl185,356,610 - 85,409,275 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604340,394,937 - 40,454,501 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Panx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473538,766,981 - 38,819,092 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473538,766,973 - 38,823,284 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000021539   ⟹   ENSCLAP00000021337
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955414401,188 - 448,470 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000021540   ⟹   ENSCLAP00000021338
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955414401,188 - 433,648 (-)Ensembl
RefSeq Acc Id: XM_005379682   ⟹   XP_005379739
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955414405,483 - 448,470 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379739 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021337
  ENSCLAP00000021337.1
  ENSCLAP00000021338.1
RefSeq Acc Id: XP_005379739   ⟸   XM_005379682
- UniProtKB: A0A8C2W0S6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000021337   ⟸   ENSCLAT00000021539
Ensembl Acc Id: ENSCLAP00000021338   ⟸   ENSCLAT00000021540


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014612 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021539 ENTREZGENE
  ENSCLAT00000021539.1 UniProtKB/TrEMBL
  ENSCLAT00000021540.1 UniProtKB/TrEMBL
InterPro Innexin UniProtKB/TrEMBL
  Pannexin UniProtKB/TrEMBL
NCBI Gene Panx1 ENTREZGENE
PANTHER PANNEXIN-1 UniProtKB/TrEMBL
  PTHR15759 UniProtKB/TrEMBL
Pfam Innexin UniProtKB/TrEMBL
PROSITE PANNEXIN UniProtKB/TrEMBL
UniProt A0A8C2VVM8_CHILA UniProtKB/TrEMBL
  A0A8C2W0S6 ENTREZGENE, UniProtKB/TrEMBL