Ndufaf5 (NADH:ubiquinone oxidoreductase complex assembly factor 5) - Rat Genome Database

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Gene: Ndufaf5 (NADH:ubiquinone oxidoreductase complex assembly factor 5) Chinchilla lanigera
Analyze
Symbol: Ndufaf5
Name: NADH:ubiquinone oxidoreductase complex assembly factor 5
RGD ID: 8827830
Description: INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); Leber plus disease (ortholog); Leigh disease (ortholog); FOUND IN matrix side of mitochondrial inner membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase (ubiquinone) complex I, assembly factor 5; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541523,221,084 - 23,262,073 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541523,221,084 - 23,263,548 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ndufaf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541523,221,084 - 23,262,073 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541523,221,084 - 23,263,548 (+)NCBIChiLan1.0ChiLan1.0
NDUFAF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382013,785,028 - 13,821,580 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2013,785,007 - 13,821,580 (+)EnsemblGRCh38hg38GRCh38
GRCh372013,765,674 - 13,802,226 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362013,713,682 - 13,745,874 (+)NCBINCBI36Build 36hg18NCBI36
Celera2013,835,718 - 13,869,123 (+)NCBICelera
Cytogenetic Map20p12.1NCBI
HuRef2013,720,309 - 13,753,711 (+)NCBIHuRef
CHM1_12013,765,617 - 13,799,023 (+)NCBICHM1_1
T2T-CHM13v2.02013,828,747 - 13,865,323 (+)NCBIT2T-CHM13v2.0
Ndufaf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392140,012,504 - 140,047,172 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2140,012,569 - 140,045,609 (+)EnsemblGRCm39 Ensembl
GRCm382140,170,584 - 140,218,965 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2140,170,649 - 140,203,689 (+)EnsemblGRCm38mm10GRCm38
MGSCv372139,996,382 - 140,030,988 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362139,862,471 - 139,895,073 (+)NCBIMGSCv36mm8
Celera2141,356,217 - 141,391,065 (+)NCBICelera
Cytogenetic Map2F3NCBI
cM Map269.2NCBI
Ndufaf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83147,961,612 - 147,991,128 (+)NCBIGRCr8
mRatBN7.23127,507,931 - 127,537,477 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3127,507,941 - 127,537,477 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3131,371,136 - 131,400,649 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03139,955,232 - 139,984,745 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03137,658,373 - 137,687,888 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03133,232,412 - 133,261,932 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3133,232,432 - 133,261,973 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03139,688,300 - 139,717,717 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43128,353,866 - 128,384,213 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13128,259,473 - 128,289,786 (+)NCBI
Celera3126,154,809 - 126,184,287 (+)NCBICelera
Cytogenetic Map3q41NCBI
NDUFAF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22114,679,233 - 14,715,055 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12014,675,994 - 14,724,032 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02013,751,315 - 13,788,024 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12013,735,768 - 13,769,147 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2013,735,798 - 13,768,671 (+)Ensemblpanpan1.1panPan2
NDUFAF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1248,810,682 - 8,873,212 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl248,837,253 - 8,873,176 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha248,621,611 - 8,684,816 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0249,249,725 - 9,285,751 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl249,247,744 - 9,285,708 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1248,822,205 - 8,885,310 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0248,918,663 - 8,981,572 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0249,267,158 - 9,330,256 (-)NCBIUU_Cfam_GSD_1.0
Ndufaf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640157,563,024 - 157,593,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364855,992,668 - 6,025,467 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364855,994,388 - 6,025,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFAF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1722,480,340 - 22,511,180 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11722,480,344 - 22,508,804 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21725,160,198 - 25,188,788 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFAF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1242,670,613 - 42,706,341 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl242,670,421 - 42,711,024 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660542,946,890 - 2,982,616 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufaf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474114,778,109 - 14,823,893 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474114,778,126 - 14,824,079 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000022941   ⟹   ENSCLAP00000022732
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541523,221,084 - 23,262,073 (+)Ensembl
RefSeq Acc Id: XM_005380887   ⟹   XP_005380944
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541523,221,084 - 23,259,040 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512337   ⟹   XP_013367791
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541523,221,084 - 23,262,073 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512338   ⟹   XP_013367792
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541523,221,084 - 23,263,548 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001233234
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541523,221,084 - 23,263,548 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005380944 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367791 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367792 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022732
  ENSCLAP00000022732.1
RefSeq Acc Id: XP_005380944   ⟸   XM_005380887
- UniProtKB: A0A8C2VZ00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367792   ⟸   XM_013512338
- UniProtKB: A0A8C2VZ00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367791   ⟸   XM_013512337
- UniProtKB: A0A8C2VZ00 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000022732   ⟸   ENSCLAT00000022941
Protein Domains
Methyltransferase type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015585 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022941 ENTREZGENE
  ENSCLAT00000022941.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
InterPro Malonyl-ACP_OMT UniProtKB/TrEMBL
  Methyltransf_11 UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/TrEMBL
NCBI Gene Ndufaf5 ENTREZGENE
PANTHER ARGININE-HYDROXYLASE NDUFAF5, MITOCHONDRIAL UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam Methyltransf_11 UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A8C2VZ00 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ndufaf5  NADH:ubiquinone oxidoreductase complex assembly factor 5    NADH dehydrogenase (ubiquinone) complex I, assembly factor 5  Symbol and/or name change 5135510 APPROVED