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Gene: Nelfcd (negative elongation factor complex member C/D) Chinchilla lanigera

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Symbol:

Nelfcd

Name:

negative elongation factor complex member C/D

RGD ID:

8818196

Description:

INVOLVED IN negative regulation of transcription elongation by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 8 (ortholog); prostate cancer (ortholog); FOUND IN NELF complex (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

negative elongation factor C/D

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	597,826 - 610,134 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	597,826 - 610,134 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis type 8 (ISO)

prostate cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transcription elongation by RNA polymerase II (ISO)

Cellular Component

NELF complex (ISO)

nucleus (ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription elongation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Nelfcd
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	597,826 - 610,134 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	597,826 - 610,134 (-)	NCBI	ChiLan1.0	ChiLan1.0

NELFCD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	58,981,256 - 58,995,113 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	58,981,208 - 58,995,133 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	57,556,311 - 57,570,168 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	56,989,706 - 57,003,583 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	56,989,705 - 57,003,581	NCBI
Celera	20	54,296,740 - 54,310,603 (+)	NCBI		Celera
Cytogenetic Map	20	q13.32	NCBI
HuRef	20	54,343,186 - 54,357,094 (+)	NCBI		HuRef
CHM1_1	20	57,457,652 - 57,471,577 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	60,764,380 - 60,778,214 (+)	NCBI		T2T-CHM13v2.0

Nelfcd
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	174,257,623 - 174,269,298 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	174,257,597 - 174,269,295 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	174,415,804 - 174,427,505 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	174,415,804 - 174,427,502 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	174,241,305 - 174,253,003 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	174,058,743 - 174,070,436 (+)	NCBI		MGSCv36	mm8
Celera	2	180,375,996 - 180,388,332 (+)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	97.93	NCBI

Nelfcd
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	183,631,968 - 183,643,088 (+)	NCBI		GRCr8
mRatBN7.2	3	163,213,765 - 163,224,886 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	163,213,762 - 163,224,884 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	167,012,506 - 167,023,627 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	175,508,965 - 175,520,084 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	173,253,352 - 173,264,473 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	172,510,840 - 172,527,118 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	172,510,874 - 172,526,740 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	178,565,103 - 178,574,630 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	3	162,387,255 - 162,398,373 (+)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

NELFCD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	64,744,607 - 64,758,512 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	64,737,729 - 64,751,634 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	55,332,309 - 55,346,167 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	56,697,394 - 56,706,458 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	56,693,685 - 56,706,458 (+)	Ensembl	panpan1.1		panPan2

NELFCD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	43,685,356 - 43,743,239 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	43,734,236 - 43,743,233 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	42,976,753 - 42,989,365 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	44,596,768 - 44,609,381 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	44,596,635 - 44,609,369 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	43,700,324 - 43,712,935 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	43,819,006 - 43,831,619 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	44,478,807 - 44,491,418 (+)	NCBI		UU_Cfam_GSD_1.0

Nelfcd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	181,824,278 - 181,832,136 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936530	1,474,136 - 1,481,567 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936530	1,474,097 - 1,481,943 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NELFCD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	59,129,076 - 59,141,499 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	59,129,055 - 59,141,499 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	66,499,448 - 66,511,907 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NELFCD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	5,146,137 - 5,159,965 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	5,146,575 - 5,159,883 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	53,197,345 - 53,211,173 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nelfcd
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	25,267,359 - 25,280,844 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	25,267,334 - 25,280,844 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013518266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013518267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01039320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01170940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000008545 ⟹ ENSCLAP00000008418

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955445	597,826 - 610,134 (-)	Ensembl

Ensembl Acc Id:

ENSCLAT00000008546 ⟹ ENSCLAP00000008419

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955445	598,286 - 610,095 (-)	Ensembl

RefSeq Acc Id:

XM_013518266 ⟹ XP_013373720

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955445	597,826 - 610,134 (-)	NCBI

Sequence:

show sequence

AGACCCAGTTTGCGCATGCGCGGCGAGAACTCGCGAAGTATGGCGGGCCCCGCGCCGGGTACTA
TCATGGCTGAAGATTACTTTGGGAATACCGCCGAGTGGGGCGAGGAGGCGGACGGCGGCCAGCA
GCAGGAAGATGATTCTGGAGAAGGAGAAGATGATGCAGAGGTGCAGCAGGAATGCCTGCATAAG
TTTTCTACGCGGGACTATATCATGGAGCCCTCCATCTTCAACACTTTGAAGAGGTATTTTCAGG
CAGGAGGGTCTCCGGAAAACGTCATCCAGCTCTTATCCGAGAACTACACTGCTGTGGCCCAGAC
TGTGAACCTGCTGGCCGAGTGGCTCATTCAGACAGGTGTTGAGCCAGTGCAGGTTCAGGAAACG
GTGGAAAATCACTTGAAGAGTTTATTGATCAAACATTTTGACCCTCGCAAAGCAGATTCTATTT
TTACTGAAGAAGGAGAGACCCCAGCTTGGCTCGAACAAATGATTGCACACACCACTTGGAGGGA
TCTCTTTTACAAACTGGCTGAAGCTCATCCGGACTGTTTGATGCTTAACTTTACTGTGAAGCTG
ATTTCTGATGCAGGCTATCAAGGGGAGATAACCAGCGTGTCCACTGCTTGTCAGCAGCTAGAAG
TGTTCTCCAGAGTGCTTCGAACCTCTCTAGCCACCATCTTGGATGGAGGAGAAGAAAACCTTGA
AAAAAACCTTCCTGAGTTTGCTAAGATGGTGTGCCACGGGGAGCACACGTACCTGTTCGCCCAG
GCTGTGATGTCGGTGCTGGCGCAGGAGGAGCAGGGCGGCTCTGCGGTTCGCAGGGTCGCACAGG
AGGTGCAGCGCTTCGCCCAGGAGAAAGGCCATGATGCCAGTCAGATCACATTGGCCCTGGGCAC
AGCCGCCTCCTACCCCCGTGCCTGTCAGGCCCTTGGGGCCATGCTGTCCAAAGGAGCCCTGAAC
CCCGCAGACATCACAGTCCTGTTCAAGATGTTCACGAGCATGGACCCCCCTCCTGTTGAACTCA
TCCGGGTTCCAGCCTTCCTGGACCTGTTCATGCAGTCACTCTTCAAACCAGGCGCCCGGATCAA
CCAGGACCACAAACACAAGTACATCCACATCTTGGCTTATGCAGCAAGTGTGGTTGAGACCTGG
AAGAAGAACAAGCGGGTGAGCATCAATAAGGATGAGTTGAAGTCAACATCGAAAGCTGTGGAGA
CGGTCCACAATTTGTGTTGCAATGAGAACAAAGGCGCCTCTGAACTTGTGGCAGAACTGAGCAC
ACTTTATCAGTGTATTAGGTTTCCAGTGGTAGCAATGGGTGTGCTGAAATGGGTGGATTGGACT
GTGTCCGAACCAAGGTACTTCCAGCTGCAGACTGACCATACTCCAGTACACCTGGCATTGCTGG
ATGAGATCAGCACCTGCCACCAGCTCCTGCACCCCCAGGTTCTACAGCTGCTCGTTAAGCTCTT
TGAGACTGAGCACTCCCAGCTGGATGTAATGGAGCAGCTTGAGTTGAAGAAGACCCTGCTGGAC
AGGATGGTTCACCTGCTGAGTCGAGGTTATGTACTTCCTGTTGTCAGTTACATCCGAAAGTGTC
TGGAGAAGCTGGACACTGACATTTCACTCATTCGCTATTTTGTCACTGAGGTGCTGGATGTTAT
TGCTCCTCCGTACACCTCTGACTTTGTGCAGCTCTTCCTCCCCATCTTGGAAAACGATAGCATT
GCAGGCACCATCAAAACAGAGGGCGAACATGACCCTGTGACGGAATTCATTGCTCACTGCAAGT
CTAACTTCATCATGGTGAACTGAGTCAGAACAGCCTGCCGAGCTGAAGCAGAGCCTTGTGGAGC
GTGGCTGGGGGACCCCTTCAAGCAGCTGCCATCTGAAGAGGCTCAGTCAGCATCTTGGATGTGG
GGTCTGCTAGGAGGGTGTGGATAATTTTTTTAAGAGGAGAATGTTAGCAGTGTGAGAACCTACC
GTTAAGGATGGTCCCTTCTGTGTTGTCAGCCCAGTTTGTTCCTAAATCCTGTGTGCAGTGCTCA
TTTCCCTCAGTTTAGGAACCAGGTTCATATTACCTCTTGGGACGAGTCTACTCGTCAGGCCAGG
GATGGTAGGAATTCAGAAAGAGACACTTTGGTGAACTATTTTCAAGGTAGATTTAAGTTTCCTC
AGAAGAACCAAGTTGGTTGGTTGATTTGAGTTTTTTTTTCTTTGTGTGTGGATAATTGTTTAAA
TTTCCTAACAACATGAAATAAATTTTTAAAAAGCC

hide sequence

RefSeq Acc Id:

XM_013518267 ⟹ XP_013373721

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955445	597,826 - 610,134 (-)	NCBI

Sequence:

show sequence

AGACCCAGTTTGCGCATGCGCGGCGAGAACTCGCGAAGTATGGCGGGCCCCGCGCCGGGTACTA
TCATGGCTGAAGATTACTTTGGGAATACCGCCGAGTGGGGCGAGGAGGCGGACGGCGGCCAGCA
GGAAGATGATTCTGGAGAAGGAGAAGATGATGCAGAGGTGCAGCAGGAATGCCTGCATAAGTTT
TCTACGCGGGACTATATCATGGAGCCCTCCATCTTCAACACTTTGAAGAGGTATTTTCAGGCAG
GAGGGTCTCCGGAAAACGTCATCCAGCTCTTATCCGAGAACTACACTGCTGTGGCCCAGACTGT
GAACCTGCTGGCCGAGTGGCTCATTCAGACAGGTGTTGAGCCAGTGCAGGTTCAGGAAACGGTG
GAAAATCACTTGAAGAGTTTATTGATCAAACATTTTGACCCTCGCAAAGCAGATTCTATTTTTA
CTGAAGAAGGAGAGACCCCAGCTTGGCTCGAACAAATGATTGCACACACCACTTGGAGGGATCT
CTTTTACAAACTGGCTGAAGCTCATCCGGACTGTTTGATGCTTAACTTTACTGTGAAGCTGATT
TCTGATGCAGGCTATCAAGGGGAGATAACCAGCGTGTCCACTGCTTGTCAGCAGCTAGAAGTGT
TCTCCAGAGTGCTTCGAACCTCTCTAGCCACCATCTTGGATGGAGGAGAAGAAAACCTTGAAAA
AAACCTTCCTGAGTTTGCTAAGATGGTGTGCCACGGGGAGCACACGTACCTGTTCGCCCAGGCT
GTGATGTCGGTGCTGGCGCAGGAGGAGCAGGGCGGCTCTGCGGTTCGCAGGGTCGCACAGGAGG
TGCAGCGCTTCGCCCAGGAGAAAGGCCATGATGCCAGTCAGATCACATTGGCCCTGGGCACAGC
CGCCTCCTACCCCCGTGCCTGTCAGGCCCTTGGGGCCATGCTGTCCAAAGGAGCCCTGAACCCC
GCAGACATCACAGTCCTGTTCAAGATGTTCACGAGCATGGACCCCCCTCCTGTTGAACTCATCC
GGGTTCCAGCCTTCCTGGACCTGTTCATGCAGTCACTCTTCAAACCAGGCGCCCGGATCAACCA
GGACCACAAACACAAGTACATCCACATCTTGGCTTATGCAGCAAGTGTGGTTGAGACCTGGAAG
AAGAACAAGCGGGTGAGCATCAATAAGGATGAGTTGAAGTCAACATCGAAAGCTGTGGAGACGG
TCCACAATTTGTGTTGCAATGAGAACAAAGGCGCCTCTGAACTTGTGGCAGAACTGAGCACACT
TTATCAGTGTATTAGGTTTCCAGTGGTAGCAATGGGTGTGCTGAAATGGGTGGATTGGACTGTG
TCCGAACCAAGGTACTTCCAGCTGCAGACTGACCATACTCCAGTACACCTGGCATTGCTGGATG
AGATCAGCACCTGCCACCAGCTCCTGCACCCCCAGGTTCTACAGCTGCTCGTTAAGCTCTTTGA
GACTGAGCACTCCCAGCTGGATGTAATGGAGCAGCTTGAGTTGAAGAAGACCCTGCTGGACAGG
ATGGTTCACCTGCTGAGTCGAGGTTATGTACTTCCTGTTGTCAGTTACATCCGAAAGTGTCTGG
AGAAGCTGGACACTGACATTTCACTCATTCGCTATTTTGTCACTGAGGTGCTGGATGTTATTGC
TCCTCCGTACACCTCTGACTTTGTGCAGCTCTTCCTCCCCATCTTGGAAAACGATAGCATTGCA
GGCACCATCAAAACAGAGGGCGAACATGACCCTGTGACGGAATTCATTGCTCACTGCAAGTCTA
ACTTCATCATGGTGAACTGAGTCAGAACAGCCTGCCGAGCTGAAGCAGAGCCTTGTGGAGCGTG
GCTGGGGGACCCCTTCAAGCAGCTGCCATCTGAAGAGGCTCAGTCAGCATCTTGGATGTGGGGT
CTGCTAGGAGGGTGTGGATAATTTTTTTAAGAGGAGAATGTTAGCAGTGTGAGAACCTACCGTT
AAGGATGGTCCCTTCTGTGTTGTCAGCCCAGTTTGTTCCTAAATCCTGTGTGCAGTGCTCATTT
CCCTCAGTTTAGGAACCAGGTTCATATTACCTCTTGGGACGAGTCTACTCGTCAGGCCAGGGAT
GGTAGGAATTCAGAAAGAGACACTTTGGTGAACTATTTTCAAGGTAGATTTAAGTTTCCTCAGA
AGAACCAAGTTGGTTGGTTGATTTGAGTTTTTTTTTCTTTGTGTGTGGATAATTGTTTAAATTT
CCTAACAACATGAAATAAATTTTTAAAAAGCC

hide sequence

Protein Sequences


Protein RefSeqs	XP_013373720	(Get FASTA)	NCBI Sequence Viewer
	XP_013373721	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000008418
	ENSCLAP00000008418.1
	ENSCLAP00000008419.1

RefSeq Acc Id:	XP_013373721 ⟸ XM_013518267
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V6C4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRGENSRSMAGPAPGTIMAEDYFGNTAEWGEEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDY IMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLK SLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGY QGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAVMSVL AQEEQGGSAVRRVAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGALNPADITV LFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYAASVVETWKKNKRV SINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRY FQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLL SRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKT EGEHDPVTEFIAHCKSNFIMVN hide sequence

RefSeq Acc Id:	XP_013373720 ⟸ XM_013518266
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2V6C4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRGENSRSMAGPAPGTIMAEDYFGNTAEWGEEADGGQQQEDDSGEGEDDAEVQQECLHKFSTRD YIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHL KSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAG YQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAVMSV LAQEEQGGSAVRRVAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGALNPADIT VLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYAASVVETWKKNKR VSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPR YFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHL LSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIK TEGEHDPVTEFIAHCKSNFIMVN hide sequence

Ensembl Acc Id:

ENSCLAP00000008418 ⟸ ENSCLAT00000008545

Ensembl Acc Id:

ENSCLAP00000008419 ⟸ ENSCLAT00000008546

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000005892	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000008545	ENTREZGENE
	ENSCLAT00000008545.1	UniProtKB/TrEMBL
	ENSCLAT00000008546.1	UniProtKB/TrEMBL
InterPro	TH1	UniProtKB/TrEMBL
NCBI Gene	LOC102019750	ENTREZGENE
PANTHER	NEGATIVE ELONGATION FACTOR C/D	UniProtKB/TrEMBL
	PTHR12144	UniProtKB/TrEMBL
Pfam	TH1	UniProtKB/TrEMBL
UniProt	A0A8C2V2L7_CHILA	UniProtKB/TrEMBL
	A0A8C2V6C4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Nelfcd	negative elongation factor complex member C/D	LOC102019750	negative elongation factor D-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations