Slc37a4 (solute carrier family 37 member 4) - Rat Genome Database

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Gene: Slc37a4 (solute carrier family 37 member 4) Chinchilla lanigera
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Symbol: Slc37a4
Name: solute carrier family 37 member 4
RGD ID: 8785323
Description: ENCODES a protein that exhibits glucose 6-phosphate:phosphate antiporter activity (ortholog); glucose-6-phosphate transmembrane transporter activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); gluconeogenesis (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN electron transport chain pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); congenital disorder of glycosylation (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glucose-6-phosphate translocase; solute carrier family 37 (glucose-6-phosphate transporter), member 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,133,652 - 20,139,542 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,133,652 - 20,140,134 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc37a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,133,652 - 20,139,542 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,133,652 - 20,140,134 (-)NCBIChiLan1.0ChiLan1.0
SLC37A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811119,024,112 - 119,030,877 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11119,023,751 - 119,030,906 (-)EnsemblGRCh38hg38GRCh38
GRCh3711118,894,822 - 118,901,587 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,400,274 - 118,406,800 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411118,400,273 - 118,406,629NCBI
Celera11116,053,114 - 116,059,668 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,834,720 - 114,841,274 (-)NCBIHuRef
CHM1_111118,781,352 - 118,787,906 (-)NCBICHM1_1
T2T-CHM13v2.011119,044,474 - 119,051,238 (-)NCBIT2T-CHM13v2.0
Slc37a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,308,243 - 44,314,263 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,308,149 - 44,314,265 (+)EnsemblGRCm39 Ensembl
GRCm38944,396,946 - 44,402,966 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,396,852 - 44,402,968 (+)EnsemblGRCm38mm10GRCm38
MGSCv37944,206,259 - 44,211,049 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,149,171 - 44,153,961 (+)NCBIMGSCv36mm8
Celera941,645,753 - 41,650,553 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Slc37a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,619,952 - 53,626,110 (+)NCBIGRCr8
mRatBN7.2844,723,216 - 44,729,301 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,723,339 - 44,729,301 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,219,432 - 50,225,517 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,498,149 - 48,504,234 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,368,147 - 46,374,232 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,716,914 - 48,723,024 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,716,939 - 48,723,024 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,335,891 - 47,341,995 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,363,896 - 47,369,981 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,372,661 - 47,378,744 (+)NCBI
Celera844,309,446 - 44,315,531 (+)NCBICelera
Cytogenetic Map8q22NCBI
SLC37A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,729,117 - 119,736,189 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,832,867 - 120,840,028 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,862,537 - 113,869,447 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,792,700 - 117,799,269 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,792,700 - 117,799,269 (-)Ensemblpanpan1.1panPan2
SLC37A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,823,485 - 14,830,007 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl514,823,499 - 14,830,004 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,876,420 - 14,882,925 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0514,766,724 - 14,773,278 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl514,766,743 - 14,773,278 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1514,905,007 - 14,911,527 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0514,808,746 - 14,815,273 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0514,849,134 - 14,855,669 (+)NCBIUU_Cfam_GSD_1.0
Slc37a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,058,817 - 101,065,693 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365423,980,236 - 3,987,066 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365423,980,538 - 3,987,039 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC37A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,247,282 - 46,254,031 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,247,278 - 46,254,068 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,282,374 - 51,289,162 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC37A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,396,133 - 110,402,737 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,395,612 - 110,401,358 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,631,589 - 15,638,169 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc37a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478414,415,395 - 14,421,944 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478414,415,385 - 14,421,953 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000023411   ⟹   ENSCLAP00000023190
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541220,133,652 - 20,139,542 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000023412   ⟹   ENSCLAP00000023191
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541220,134,200 - 20,138,790 (-)Ensembl
RefSeq Acc Id: XM_005378292   ⟹   XP_005378349
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,133,652 - 20,139,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511130   ⟹   XP_013366584
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,133,652 - 20,139,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511131   ⟹   XP_013366585
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,133,652 - 20,139,436 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511132   ⟹   XP_013366586
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,133,652 - 20,139,550 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511133   ⟹   XP_013366587
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,133,652 - 20,139,719 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511134   ⟹   XP_013366588
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,133,652 - 20,140,134 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511135   ⟹   XP_013366589
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,133,652 - 20,138,542 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005378349   ⟸   XM_005378292
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YU04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366588   ⟸   XM_013511134
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366587   ⟸   XM_013511133
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366586   ⟸   XM_013511132
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366584   ⟸   XM_013511130
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366585   ⟸   XM_013511131
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366589   ⟸   XM_013511135
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSCLAP00000023191   ⟸   ENSCLAT00000023412
Ensembl Acc Id: ENSCLAP00000023190   ⟸   ENSCLAT00000023411

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015915 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023411 ENTREZGENE
  ENSCLAT00000023411.1 UniProtKB/TrEMBL
  ENSCLAT00000023412 ENTREZGENE
  ENSCLAT00000023412.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  OPA_Antiporter UniProtKB/TrEMBL
  Sugar-P_transporter_CS UniProtKB/TrEMBL
  Sugar_P_transporter UniProtKB/TrEMBL
NCBI Gene Slc37a4 ENTREZGENE
PANTHER GLUCOSE-6-PHOSPHATE EXCHANGER SLC37A4 UniProtKB/TrEMBL
  GLUCOSE-6-PHOSPHATE EXCHANGER SLC37A4 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PIRSF Hexose_phosphate_transp UniProtKB/TrEMBL
PROSITE GLPT UniProtKB/TrEMBL
  MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A8C2YTZ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YU04 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc37a4  solute carrier family 37 member 4    solute carrier family 37 (glucose-6-phosphate transporter), member 4  Symbol and/or name change 5135510 APPROVED