Actn4 (actinin alpha 4) - Rat Genome Database

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Gene: Actn4 (actinin alpha 4) Chinchilla lanigera
Analyze
Symbol: Actn4
Name: actinin alpha 4
RGD ID: 8778277
Description: ENCODES a protein that exhibits actin filament binding (ortholog); chromatin DNA binding (ortholog); nuclear receptor binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); bicellular tight junction assembly (ortholog); gene expression (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN actin cytoskeleton (ortholog); cell-cell junction (ortholog); cortical actin cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actinin, alpha 4; alpha-actinin-4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955468770,573 - 842,209 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955468770,573 - 841,859 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Actn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955468770,573 - 842,209 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955468770,573 - 841,859 (-)NCBIChiLan1.0ChiLan1.0
ACTN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381938,647,649 - 38,731,589 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1938,647,649 - 38,731,589 (+)EnsemblGRCh38hg38GRCh38
GRCh371939,138,289 - 39,222,229 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361943,830,167 - 43,913,010 (+)NCBINCBI36Build 36hg18NCBI36
Build 341943,830,166 - 43,913,010NCBI
Celera1935,940,352 - 36,023,163 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1935,584,836 - 35,667,954 (+)NCBIHuRef
CHM1_11939,139,090 - 39,221,979 (+)NCBICHM1_1
T2T-CHM13v2.01941,451,629 - 41,535,643 (+)NCBIT2T-CHM13v2.0
Actn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,592,673 - 28,661,799 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl728,592,673 - 28,661,765 (-)EnsemblGRCm39 Ensembl
GRCm38728,893,248 - 28,962,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,893,248 - 28,962,340 (-)EnsemblGRCm38mm10GRCm38
MGSCv37729,678,273 - 29,747,299 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36728,602,014 - 28,671,040 (-)NCBIMGSCv36mm8
Celera723,454,694 - 23,523,720 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map716.94NCBI
Actn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8193,310,294 - 93,379,369 (-)NCBIGRCr8
mRatBN7.2184,182,783 - 84,251,867 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,182,788 - 84,251,847 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx189,592,702 - 89,661,646 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0198,051,807 - 98,120,960 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0191,348,565 - 91,417,509 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0187,078,012 - 87,147,347 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl187,078,020 - 87,147,333 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0188,258,630 - 88,327,965 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,000,723 - 84,073,767 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1184,079,711 - 84,151,876 (-)NCBI
Celera178,572,890 - 78,641,919 (-)NCBICelera
Cytogenetic Map1q21NCBI
ACTN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22044,939,775 - 45,022,391 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11946,810,115 - 46,892,741 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01935,742,758 - 35,825,321 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11944,313,569 - 44,395,508 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1944,313,569 - 44,395,508 (+)Ensemblpanpan1.1panPan2
ACTN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,354,993 - 114,427,997 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1114,309,693 - 114,427,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,759,618 - 113,832,649 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01114,956,867 - 115,029,926 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1114,912,152 - 115,030,195 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11114,530,067 - 114,602,907 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01114,147,609 - 114,220,650 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01115,186,154 - 115,259,191 (-)NCBIUU_Cfam_GSD_1.0
Actn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,167,758 - 13,237,529 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368011,333,077 - 1,404,054 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368011,333,077 - 1,402,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl647,493,919 - 47,565,998 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1647,493,834 - 47,565,999 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,045,503 - 43,126,155 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACTN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,290,639 - 33,373,059 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl633,290,622 - 33,374,693 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607311,240,578 - 11,323,802 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Actn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479412,042,533 - 12,113,886 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479412,042,627 - 12,113,762 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000018570   ⟹   ENSCLAP00000018389
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955468770,573 - 842,209 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000018571   ⟹   ENSCLAP00000018390
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955468771,647 - 842,209 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000018572   ⟹   ENSCLAP00000018391
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955468771,647 - 842,209 (-)Ensembl
RefSeq Acc Id: XM_005399834   ⟹   XP_005399891
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955468770,573 - 841,858 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005399835   ⟹   XP_005399892
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955468771,647 - 841,735 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522442   ⟹   XP_013377896
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955468770,573 - 841,859 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005399891 (Get FASTA)   NCBI Sequence Viewer  
  XP_005399892 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377896 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018389.1
  ENSCLAP00000018390.1
  ENSCLAP00000018391
  ENSCLAP00000018391.1
RefSeq Acc Id: XP_005399892   ⟸   XM_005399835
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VNZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005399891   ⟸   XM_005399834
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013377896   ⟸   XM_013522442
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCLAP00000018390   ⟸   ENSCLAT00000018571
Ensembl Acc Id: ENSCLAP00000018391   ⟸   ENSCLAT00000018572
Ensembl Acc Id: ENSCLAP00000018389   ⟸   ENSCLAT00000018570
Protein Domains
Calponin-homology (CH)   EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012608 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018570.1 UniProtKB/TrEMBL
  ENSCLAT00000018571.1 UniProtKB/TrEMBL
  ENSCLAT00000018572 ENTREZGENE
  ENSCLAT00000018572.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  1.20.58.60 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF-hand_Ca_insen UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/TrEMBL
NCBI Gene Actn4 ENTREZGENE
PANTHER SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN UniProtKB/TrEMBL
Pfam EFhand_Ca_insen UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
  Spectrin UniProtKB/TrEMBL
PROSITE ACTININ_1 UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/TrEMBL
  EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
  efhand_Ca_insen UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
  SPEC UniProtKB/TrEMBL
Superfamily-SCOP Spectrin repeat UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
  SSF47576 UniProtKB/TrEMBL
UniProt A0A8C2VNZ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YRP7_CHILA UniProtKB/TrEMBL
  A0A8C2YRQ4_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Actn4  actinin alpha 4    actinin, alpha 4  Symbol and/or name change 5135510 APPROVED