Hm13 (histocompatibility minor 13) - Rat Genome Database

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Gene: Hm13 (histocompatibility minor 13) Chinchilla lanigera
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Symbol: Hm13
Name: histocompatibility minor 13
RGD ID: 8777181
Description: ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); peptidase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN in utero embryonic development (ortholog); membrane protein ectodomain proteolysis (ortholog); membrane protein intracellular domain proteolysis (ortholog); ASSOCIATED WITH Herpesviridae Infections (ortholog); steatotic liver disease (ortholog); FOUND IN cell surface (ortholog); cytoplasmic side of endoplasmic reticulum membrane (ortholog); Derlin-1 retrotranslocation complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histocompatibility (minor) 13; minor histocompatibility antigen H13
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542229,362,724 - 29,408,840 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542229,365,722 - 29,408,788 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hm13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542229,362,724 - 29,408,840 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542229,365,722 - 29,408,788 (-)NCBIChiLan1.0ChiLan1.0
HM13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382031,514,442 - 31,569,543 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2031,514,428 - 31,577,923 (+)EnsemblGRCh38hg38GRCh38
GRCh372030,102,245 - 30,157,346 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362029,565,902 - 29,621,031 (+)NCBINCBI36Build 36hg18NCBI36
Build 342029,565,901 - 29,591,257NCBI
Celera2026,858,423 - 26,913,551 (+)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2026,890,440 - 26,945,730 (+)NCBIHuRef
CHM1_12030,006,150 - 30,061,281 (+)NCBICHM1_1
T2T-CHM13v2.02033,238,668 - 33,293,768 (+)NCBIT2T-CHM13v2.0
H13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,511,292 - 152,550,590 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,511,381 - 152,550,590 (+)EnsemblGRCm39 Ensembl
GRCm382152,669,422 - 152,708,668 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,669,461 - 152,708,670 (+)EnsemblGRCm38mm10GRCm38
MGSCv372152,495,197 - 152,534,404 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362152,360,940 - 152,398,265 (+)NCBIMGSCv36mm8
Celera2158,485,404 - 158,524,533 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.41NCBI
Hm13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,606,059 - 161,641,382 (+)NCBIGRCr8
mRatBN7.23141,145,792 - 141,183,557 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3141,145,782 - 141,184,703 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3145,050,767 - 145,086,080 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,634,606 - 153,669,917 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,375,215 - 151,410,387 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03148,150,695 - 148,189,623 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3148,150,698 - 148,189,623 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,555,170 - 154,594,098 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43143,020,648 - 143,059,566 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13142,892,504 - 142,961,304 (+)NCBI
Celera3139,895,459 - 139,934,248 (+)NCBICelera
Cytogenetic Map3q41NCBI
HM13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22137,205,681 - 37,262,331 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12037,198,811 - 37,255,442 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02027,803,597 - 27,859,384 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12028,441,297 - 28,499,344 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2028,441,285 - 28,501,001 (+)Ensemblpanpan1.1panPan2
HM13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12421,026,851 - 21,067,773 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2421,026,366 - 21,071,165 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,674,903 - 20,715,412 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02421,713,695 - 21,754,672 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,713,704 - 21,754,672 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,992,044 - 21,032,813 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02421,097,128 - 21,137,662 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02421,527,475 - 21,567,990 (+)NCBIUU_Cfam_GSD_1.0
Hm13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640170,108,510 - 170,152,239 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648518,539,826 - 18,583,813 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648518,539,873 - 18,583,605 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HM13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1735,248,570 - 35,288,539 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11735,248,575 - 35,288,431 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21740,078,434 - 40,117,783 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HM13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1235,925,316 - 35,975,209 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl235,925,290 - 35,977,982 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605090,980,941 - 91,032,531 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hm13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624741921,023 - 977,703 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624741924,040 - 977,646 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000025214   ⟹   ENSCLAP00000024970
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542229,362,724 - 29,408,840 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000025215   ⟹   ENSCLAP00000024971
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542229,366,857 - 29,408,840 (-)Ensembl
RefSeq Acc Id: XM_005384908   ⟹   XP_005384965
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542229,365,722 - 29,408,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384909   ⟹   XP_005384966
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542229,365,722 - 29,408,788 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384910   ⟹   XP_005384967
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542229,365,722 - 29,408,785 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384911   ⟹   XP_005384968
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542229,365,722 - 29,388,634 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001233957
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542229,366,076 - 29,408,787 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005384966   ⟸   XM_005384909
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W6G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005384965   ⟸   XM_005384908
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W6G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005384967   ⟸   XM_005384910
- Peptide Label: isoform X3
- UniProtKB: A0A8C2WCL4 (UniProtKB/TrEMBL),   A0A8C2W6G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005384968   ⟸   XM_005384911
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSCLAP00000024971   ⟸   ENSCLAT00000025215
Ensembl Acc Id: ENSCLAP00000024970   ⟸   ENSCLAT00000025214


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017145 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025214 ENTREZGENE
  ENSCLAT00000025214.1 UniProtKB/TrEMBL
  ENSCLAT00000025215 ENTREZGENE
  ENSCLAT00000025215.1 UniProtKB/TrEMBL
InterPro Peptidase_A22B_SPP UniProtKB/TrEMBL
  Preselin/SPP UniProtKB/TrEMBL
NCBI Gene Hm13 ENTREZGENE
PANTHER MINOR HISTOCOMPATIBILITY ANTIGEN H13 UniProtKB/TrEMBL
  PTHR12174 UniProtKB/TrEMBL
Pfam Peptidase_A22B UniProtKB/TrEMBL
SMART PSN UniProtKB/TrEMBL
UniProt A0A8C2W6G4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2WCL4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Hm13  histocompatibility minor 13    histocompatibility (minor) 13  Symbol and/or name change 5135510 APPROVED