Atm (ATM serine/threonine kinase) - Rat Genome Database

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Gene: Atm (ATM serine/threonine kinase) Chinchilla lanigera
Analyze
Symbol: Atm
Name: ATM serine/threonine kinase
RGD ID: 8708960
Description: ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); DNA-dependent protein kinase activity (ortholog); histone H2AXS139 kinase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); brain development (ortholog); cellular response to gamma radiation (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; nuclear factor kappa B signaling pathway; p38 MAPK signaling pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); adenocarcinoma (ortholog); adenoid cystic carcinoma (ortholog); FOUND IN centrosome (ortholog); chromosome, telomeric region (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ataxia telangiectasia mutated; serine-protein kinase ATM
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541210,426,135 - 10,530,545 (+)Ensembl
ChiLan1.0NW_00495541210,422,753 - 10,531,406 (+)NCBIChiLan1.0ChiLan1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View
Acute Liver Failure  (ISO)
adenocarcinoma  (ISO)
adenoid cystic carcinoma  (ISO)
Alzheimer's disease  (ISO)
Arenaviridae infectious disease  (ISO)
arteriosclerosis  (ISO)
astroblastoma, MN1-altered  (ISO)
ataxia telangiectasia  (ISO)
Ataxia-Telangiectasia Variant  (ISO)
B-Cell Chronic Lymphocytic Leukemia  (ISO)
beta-ketothiolase deficiency  (ISO)
bilateral breast cancer  (ISO)
bile duct cancer  (ISO)
brain cancer  (ISO)
Brain Neoplasms  (ISO)
breast cancer  (ISO)
Breast Cancer, Familial  (ISO)
breast carcinoma  (ISO)
Breast Neoplasms  (ISO)
cancer  (ISO)
cataract  (ISO)
cerebellar ataxia  (ISO)
chromosome 11 partial duplication syndrome  (ISO)
clear cell renal cell carcinoma  (ISO)
colon cancer  (ISO)
colon carcinoma  (ISO)
Colonic Neoplasms  (ISO)
colorectal cancer  (ISO)
Colorectal Cancer 10  (ISO)
congenital merosin-deficient muscular dystrophy 1A  (ISO)
dilated cardiomyopathy  (ISO)
disease of cellular proliferation  (ISO)
endometrial cancer  (ISO)
endometrial carcinoma  (ISO)
endometrial serous adenocarcinoma  (ISO)
esophagus squamous cell carcinoma  (ISO)
Experimental Colitis  (ISO)
Familial Pancreatic Carcinoma  (ISO)
Familial Prostate Cancer  (ISO)
female breast cancer  (ISO)
Fibrosis  (ISO)
Gastro-Enteropancreatic Neuroendocrine Tumor  (ISO)
glioblastoma  (ISO)
Helicobacter Infections  (ISO)
hepatoblastoma  (ISO)
hepatocellular carcinoma  (ISO)
hereditary breast ovarian cancer syndrome  (ISO)
Hereditary Neoplastic Syndromes  (ISO)
herpes simplex virus keratitis  (ISO)
Herpesviridae Infections  (ISO)
high grade glioma  (ISO)
human immunodeficiency virus infectious disease  (ISO)
Hypercholesterolemia  (ISO)
IDH-mutant anaplastic astrocytoma  (ISO)
infertility  (ISO)
influenza A  (ISO)
Insulin Resistance  (ISO)
intellectual disability  (ISO)
Kidney Reperfusion Injury  (ISO)
Koolen de Vries syndrome  (ISO)
leukemia  (ISO)
liver cancer  (ISO)
liver cirrhosis  (ISO)
lung cancer  (ISO)
lung non-small cell carcinoma  (ISO)
lung small cell carcinoma  (ISO)
lung squamous cell carcinoma  (ISO)
lymphoma  (ISO)
Lynch syndrome 1  (ISO)
mantle cell lymphoma  (ISO)
melanoma  (ISO)
Metabolic Syndrome  (ISO)
microcephaly  (ISO)
multiple endocrine neoplasia type 1  (ISO)
multiple myeloma  (ISO)
myocardial infarction  (ISO)
nasopharynx carcinoma  (ISO)
oral mucosa leukoplakia  (ISO)
oral squamous cell carcinoma  (ISO)
osteoporosis  (ISO)
Otorhinolaryngologic Neoplasms  (ISO)
ovarian cancer  (ISO)
ovarian carcinoma  (ISO)
Ovarian Neoplasms  (ISO)
pancreatic cancer  (ISO)
pancreatic carcinoma  (ISO)
papillary thyroid carcinoma  (ISO)
Parkinson's disease  (ISO)
peripheral T-cell lymphoma  (ISO)
Pneumococcal Meningitis  (ISO)
polycythemia vera  (ISO)
pre-malignant neoplasm  (ISO)
Prenatal Exposure Delayed Effects  (ISO)
primary cutaneous T-cell non-Hodgkin lymphoma  (ISO)
prostate cancer  (ISO)
prostate carcinoma in situ  (ISO)
Prostatic Neoplasms  (ISO)
Radiation Pneumonitis  (ISO)
renal cell carcinoma  (ISO)
Renal Cell Carcinoma 1  (ISO)
Retroviridae Infections  (ISO)
Rhabdoviridae Infections  (ISO)
senile cataract  (ISO)
Sepsis  (ISO)
Spinal Cord Injuries  (ISO)
squamous cell carcinoma  (ISO)
status epilepticus  (ISO)
stomach cancer  (ISO)
Stomach Neoplasms  (ISO)
Streptococcus pneumonia  (ISO)
T-cell prolymphocytic leukemia  (ISO)
thyroid cancer  (ISO)
urinary bladder cancer  (ISO)
Urinary Bladder Neoplasm  (ISO)
uterine corpus cancer  (ISO)
Ventricular Dysfunction, Left  (ISO)
X-linked cardiac valvular dysplasia  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
autophagosome assembly  (ISO)
brain development  (ISO)
cellular response to gamma radiation  (ISO)
cellular response to ionizing radiation  (ISO)
cellular response to nitrosative stress  (ISO)
cellular response to reactive oxygen species  (ISO)
cellular response to retinoic acid  (ISO)
cellular response to stress  (ISO)
cellular response to X-ray  (ISO)
chromosome organization involved in meiotic cell cycle  (ISO)
determination of adult lifespan  (ISO)
DNA damage checkpoint signaling  (ISO)
DNA damage response  (ISO)
DNA damage response, signal transduction by p53 class mediator  (ISO)
DNA double-strand break processing  (ISO)
DNA repair  (ISO)
DNA strand resection involved in replication fork processing  (ISO)
double-strand break repair  (ISO)
double-strand break repair via homologous recombination  (ISO)
establishment of protein-containing complex localization to telomere  (ISO)
establishment of RNA localization to telomere  (ISO)
female gamete generation  (ISO)
female gonad development  (ISO)
female meiotic nuclear division  (ISO)
heart development  (ISO)
histone mRNA catabolic process  (ISO)
immune system process  (ISO)
intrinsic apoptotic signaling pathway in response to DNA damage  (ISO)
lipoprotein catabolic process  (ISO)
male meiotic nuclear division  (ISO)
meiotic telomere clustering  (ISO)
mitotic G2 DNA damage checkpoint signaling  (ISO)
mitotic spindle assembly checkpoint signaling  (ISO)
multicellular organism growth  (ISO)
negative regulation of B cell proliferation  (ISO)
negative regulation of double-strand break repair via homologous recombination  (ISO)
negative regulation of signal transduction by p53 class mediator  (ISO)
negative regulation of telomere capping  (ISO)
negative regulation of TORC1 signaling  (ISO)
neuron apoptotic process  (ISO)
oocyte development  (ISO)
ovarian follicle development  (ISO)
peptidyl-serine autophosphorylation  (ISO)
pexophagy  (ISO)
positive regulation of apoptotic process  (ISO)
positive regulation of autophagosome assembly  (ISO)
positive regulation of cell adhesion  (ISO)
positive regulation of cell migration  (ISO)
positive regulation of DNA catabolic process  (ISO)
positive regulation of DNA damage response, signal transduction by p53 class mediator  (ISO)
positive regulation of double-strand break repair  (ISO)
positive regulation of double-strand break repair via homologous recombination  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of neuron apoptotic process  (ISO)
positive regulation of telomerase catalytic core complex assembly  (ISO)
positive regulation of telomere maintenance via telomerase  (ISO)
positive regulation of telomere maintenance via telomere lengthening  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
post-embryonic development  (ISO)
pre-B cell allelic exclusion  (ISO)
proteasome-mediated ubiquitin-dependent protein catabolic process  (ISO)
protein autophosphorylation  (ISO)
protein K63-linked ubiquitination  (ISO)
protein localization to site of double-strand break  (ISO)
protein monoubiquitination  (ISO)
protein phosphorylation  (ISO)
protein stabilization  (ISO)
regulation of autophagosome assembly  (ISO)
regulation of autophagy  (ISO)
regulation of cell cycle  (ISO)
regulation of microglial cell activation  (ISO)
regulation of telomere maintenance via telomerase  (ISO)
replicative senescence  (ISO)
response to hypoxia  (ISO)
response to ionizing radiation  (ISO)
response to oxidative stress  (ISO)
response to starvation  (ISO)
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  (ISO)
signal transduction in response to DNA damage  (ISO)
somitogenesis  (ISO)
thymus development  (ISO)
V(D)J recombination  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541210,426,135 - 10,530,545 (+)Ensembl
ChiLan1.0NW_00495541210,422,753 - 10,531,406 (+)NCBIChiLan1.0ChiLan1.0
ATM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811108,223,067 - 108,369,102 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11108,222,804 - 108,369,102 (+)Ensemblhg38GRCh38
GRCh3711108,093,794 - 108,239,829 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611107,598,769 - 107,745,036 (+)NCBIBuild 36Build 36hg18NCBI36
Celera11105,248,510 - 105,394,764 (+)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11104,019,183 - 104,165,444 (+)NCBIHuRef
CHM1_111107,976,660 - 108,122,959 (+)NCBICHM1_1
T2T-CHM13v2.011108,230,362 - 108,376,596 (+)NCBIT2T-CHM13v2.0
Atm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39953,348,422 - 53,448,125 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl953,350,449 - 53,448,040 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38953,437,122 - 53,536,828 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl953,439,149 - 53,536,740 (-)Ensemblmm10GRCm38
MGSCv37953,245,227 - 53,344,776 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36953,201,763 - 53,298,968 (-)NCBIMGSCv36mm8
Celera950,696,862 - 50,796,451 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.12NCBI
Atm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8862,724,939 - 62,829,040 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl862,727,291 - 62,828,629 (-)EnsemblGRCr8
mRatBN7.2853,828,741 - 53,932,773 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl853,831,093 - 53,932,437 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx859,356,470 - 59,457,803 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0857,635,498 - 57,736,825 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0855,499,734 - 55,601,064 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0858,015,938 - 58,119,973 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl858,015,940 - 58,120,045 (-)Ensemblrn6Rnor6.0
Rnor_5.0856,598,503 - 56,703,115 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4856,894,746 - 56,996,565 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera853,321,802 - 53,423,212 (-)NCBICelera
Cytogenetic Map8q24NCBI
ATM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29108,968,082 - 109,114,865 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111110,061,127 - 110,207,606 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011103,109,979 - 103,256,405 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111106,584,228 - 106,728,457 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11106,584,228 - 106,727,041 (+)EnsemblpanPan2panpan1.1
ATM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1524,180,129 - 24,297,207 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl524,182,135 - 24,297,207 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha524,107,778 - 24,222,696 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0524,211,375 - 24,326,057 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl524,211,375 - 24,326,057 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1524,258,890 - 24,373,424 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0524,160,300 - 24,274,920 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0524,218,488 - 24,333,125 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494791,001,856 - 91,178,286 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936551359,362 - 532,211 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936551359,134 - 534,672 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl936,620,657 - 36,759,552 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1936,620,656 - 36,759,555 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2940,746,630 - 40,837,766 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2940,926,043 - 40,945,434 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1199,653,208 - 99,786,889 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl199,653,139 - 99,791,520 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604326,170,879 - 26,305,849 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247842,937,499 - 3,078,216 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247842,933,172 - 3,080,131 (+)NCBIHetGla 1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000017459   ⟹   ENSCLAP00000017290
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541210,426,135 - 10,530,545 (+)Ensembl
RefSeq Acc Id: XM_005378035   ⟹   XP_005378092
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541210,422,753 - 10,531,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013510995   ⟹   XP_013366449
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541210,422,753 - 10,531,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013510996   ⟹   XP_013366450
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541210,422,753 - 10,531,406 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001232882
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541210,422,753 - 10,515,026 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378092 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366449 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366450 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017290
  ENSCLAP00000017290.1
RefSeq Acc Id: XP_005378092   ⟸   XM_005378035
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VT21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366449   ⟸   XM_013510995
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VT21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366450   ⟸   XM_013510996
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VT21 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000017290   ⟸   ENSCLAT00000017459
Protein Domains
FAT   FATC   PI3K/PI4K catalytic


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011868 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017459 ENTREZGENE
  ENSCLAT00000017459.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1070.11 UniProtKB/TrEMBL
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 4 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  ATM_plant UniProtKB/TrEMBL
  FATC_dom UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  PI3/4_kinase_cat_dom UniProtKB/TrEMBL
  PI3/4_kinase_cat_sf UniProtKB/TrEMBL
  PI3/4_kinase_CS UniProtKB/TrEMBL
  PIK-rel_kinase_FAT UniProtKB/TrEMBL
  PIK_FAT UniProtKB/TrEMBL
  PIKKc_ATM UniProtKB/TrEMBL
  TAN UniProtKB/TrEMBL
NCBI Gene Atm ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE ATM UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE ATM UniProtKB/TrEMBL
Pfam FAT UniProtKB/TrEMBL
  FATC UniProtKB/TrEMBL
  PI3_PI4_kinase UniProtKB/TrEMBL
  TAN UniProtKB/TrEMBL
PROSITE FAT UniProtKB/TrEMBL
  FATC UniProtKB/TrEMBL
  PI3_4_KINASE_1 UniProtKB/TrEMBL
  PI3_4_KINASE_2 UniProtKB/TrEMBL
  PI3_4_KINASE_3 UniProtKB/TrEMBL
SMART FATC UniProtKB/TrEMBL
  PI3Kc UniProtKB/TrEMBL
  TAN UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A8C2VT21 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Atm  ATM serine/threonine kinase    ataxia telangiectasia mutated  Symbol and/or name change 5135510 APPROVED