Dnajc19 (DnaJ heat shock protein family (Hsp40) member C19) - Rat Genome Database

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Gene: Dnajc19 (DnaJ heat shock protein family (Hsp40) member C19) Chinchilla lanigera
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Symbol: Dnajc19
Name: DnaJ heat shock protein family (Hsp40) member C19
RGD ID: 8704094
Description: INVOLVED IN genitalia development (ortholog); regulation of cardiolipin metabolic process (ortholog); visual perception (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH 3-methylglutaconic aciduria (ortholog); 3-methylglutaconic aciduria type 3 (ortholog); 3-methylglutaconic aciduria type 5 (ortholog); FOUND IN inner mitochondrial membrane protein complex (ortholog); matrix side of mitochondrial inner membrane (ortholog); mitochondrial inner membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DnaJ (Hsp40) homolog, subfamily C, member 19; mitochondrial import inner membrane translocase subunit TIM14
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554209,953,045 - 9,978,789 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554209,974,466 - 9,978,789 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dnajc19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554209,953,045 - 9,978,789 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554209,974,466 - 9,978,789 (-)NCBIChiLan1.0ChiLan1.0
DNAJC19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383180,983,709 - 180,989,838 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3180,983,697 - 180,989,774 (-)EnsemblGRCh38hg38GRCh38
GRCh373180,701,497 - 180,707,626 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363182,184,197 - 182,190,224 (-)NCBINCBI36Build 36hg18NCBI36
Celera3179,133,934 - 179,140,000 (-)NCBICelera
Cytogenetic Map3q26.33NCBI
HuRef3178,105,493 - 178,111,557 (-)NCBIHuRef
CHM1_13180,664,781 - 180,670,846 (-)NCBICHM1_1
T2T-CHM13v2.03183,785,491 - 183,791,620 (-)NCBIT2T-CHM13v2.0
Dnajc19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39334,111,429 - 34,135,503 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl334,110,169 - 34,135,470 (-)EnsemblGRCm39 Ensembl
GRCm38334,057,280 - 34,081,354 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl334,056,020 - 34,081,321 (-)EnsemblGRCm38mm10GRCm38
MGSCv37333,956,680 - 33,980,248 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36334,249,307 - 34,272,875 (-)NCBIMGSCv36mm8
Celera333,953,924 - 33,977,453 (-)NCBICelera
Cytogenetic Map3A3NCBI
cM Map316.43NCBI
Dnajc19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82118,851,497 - 118,875,813 (-)NCBIGRCr8
mRatBN7.22116,923,272 - 116,945,312 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2116,923,272 - 116,945,264 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2123,512,875 - 123,534,874 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02121,625,542 - 121,647,543 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02116,253,290 - 116,275,296 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02120,503,093 - 120,531,782 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2120,504,130 - 120,531,782 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02140,149,956 - 140,174,575 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2111,962,564 - 111,984,600 (-)NCBICelera
Cytogenetic Map2q24NCBI
DNAJC19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22178,855,625 - 178,861,633 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13178,860,342 - 178,866,350 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03178,019,161 - 178,025,272 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13186,191,128 - 186,197,156 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3186,191,128 - 186,195,666 (-)Ensemblpanpan1.1panPan2
DNAJC19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13414,199,507 - 14,204,736 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3414,199,675 - 14,204,687 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3418,281,677 - 18,286,739 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03414,101,051 - 14,106,123 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3414,098,572 - 14,106,041 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13414,146,876 - 14,151,940 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03414,129,181 - 14,134,245 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03414,373,244 - 14,378,316 (-)NCBIUU_Cfam_GSD_1.0
Dnajc19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602110,872,579 - 110,877,731 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365662,343,013 - 2,368,213 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365662,342,995 - 2,348,345 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13118,902,666 - 118,913,270 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113118,907,299 - 118,913,270 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213128,168,301 - 128,255,013 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJC19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,408,615 - 8,426,838 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl158,408,400 - 8,429,990 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606317,240,292 - 17,259,188 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajc19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473058,730,413 - 58,755,688 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473058,746,824 - 58,755,544 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000016504   ⟹   ENSCLAP00000016340
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554209,953,045 - 9,977,504 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000016505   ⟹   ENSCLAP00000016341
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554209,974,466 - 9,978,789 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000016506   ⟹   ENSCLAP00000016342
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554209,974,466 - 9,977,552 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000016507   ⟹   ENSCLAP00000016343
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554209,974,557 - 9,978,348 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000016508   ⟹   ENSCLAP00000016344
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554209,974,558 - 9,977,566 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000016509   ⟹   ENSCLAP00000016345
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554209,975,681 - 9,977,504 (-)Ensembl
RefSeq Acc Id: XM_005383071   ⟹   XP_005383128
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554209,974,466 - 9,978,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005383072   ⟹   XP_005383129
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554209,974,466 - 9,978,789 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005383129   ⟸   XM_005383072
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VQQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005383128   ⟸   XM_005383071
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VPF4 (UniProtKB/TrEMBL),   A0A8C2VJ06 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000016341   ⟸   ENSCLAT00000016505
Ensembl Acc Id: ENSCLAP00000016343   ⟸   ENSCLAT00000016507
Ensembl Acc Id: ENSCLAP00000016344   ⟸   ENSCLAT00000016508
Ensembl Acc Id: ENSCLAP00000016342   ⟸   ENSCLAT00000016506
Ensembl Acc Id: ENSCLAP00000016340   ⟸   ENSCLAT00000016504
Ensembl Acc Id: ENSCLAP00000016345   ⟸   ENSCLAT00000016509
Protein Domains
J


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011246 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016504.1 UniProtKB/TrEMBL
  ENSCLAT00000016505 ENTREZGENE
  ENSCLAT00000016505.1 UniProtKB/TrEMBL
  ENSCLAT00000016506.1 UniProtKB/TrEMBL
  ENSCLAT00000016507 ENTREZGENE
  ENSCLAT00000016507.1 UniProtKB/TrEMBL
  ENSCLAT00000016508.1 UniProtKB/TrEMBL
  ENSCLAT00000016509.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
InterPro DnaJ_domain UniProtKB/TrEMBL
  J_dom_sf UniProtKB/TrEMBL
NCBI Gene Dnajc19 ENTREZGENE
PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM14 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
PROSITE DNAJ_2 UniProtKB/TrEMBL
SMART DnaJ UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/TrEMBL
UniProt A0A8C2VJ01_CHILA UniProtKB/TrEMBL
  A0A8C2VJ06 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VL93_CHILA UniProtKB/TrEMBL
  A0A8C2VN19_CHILA UniProtKB/TrEMBL
  A0A8C2VPF4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VQQ7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Dnajc19  DnaJ heat shock protein family (Hsp40) member C19    DnaJ (Hsp40) homolog, subfamily C, member 19  Symbol and/or name change 5135510 APPROVED