LOC102548945 (uncharacterized LOC102548945) - Rat Genome Database

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Gene: LOC102548945 (uncharacterized LOC102548945) Rattus norvegicus
Analyze
Symbol: LOC102548945
Name: uncharacterized LOC102548945
RGD ID: 7735776
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815101,559,261 - 101,569,557 (+)NCBIGRCr8
mRatBN7.21595,153,107 - 95,163,012 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.015103,295,296 - 103,306,960 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015106,735,672 - 106,745,474 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1594,003,251 - 94,014,915 (+)NCBICelera
Cytogenetic Map15q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102548945
35 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)158885347095840528Rat


Expression


Sequence


RefSeq Acc Id: XR_010058048
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815101,559,261 - 101,567,786 (+)NCBI
RefSeq Acc Id: XR_010058049
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815101,560,284 - 101,569,557 (+)NCBI
RefSeq Acc Id: XR_596298
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815101,560,286 - 101,567,786 (+)NCBI
mRatBN7.21595,153,108 - 95,160,621 (+)NCBI
Rnor_6.015103,295,296 - 103,303,889 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12454 BioCyc
NCBI Gene LOC102548945 ENTREZGENE
PhenoGen LOC102548945 PhenoGen
RNAcentral URS0000CCE4F0 RNACentral
  URS0000CCFAE7 RNACentral
  URS0000CD095A RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102548945  uncharacterized LOC102548945      Symbol and Name status set to provisional 70820 PROVISIONAL