LOC102552725 (uncharacterized LOC102552725) - Rat Genome Database

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Gene: LOC102552725 (uncharacterized LOC102552725) Rattus norvegicus
Analyze
Symbol: LOC102552725
Name: uncharacterized LOC102552725
RGD ID: 7712322
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81138,536,224 - 38,544,749 (+)NCBIGRCr8
mRatBN7.21125,048,703 - 25,055,640 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1125,047,618 - 25,056,131 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01125,458,535 - 25,465,931 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01129,084,890 - 29,089,990 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1124,851,994 - 24,857,011 (+)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102552725
32 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111283104625121472Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000103463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1125,047,618 - 25,056,131 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1125,047,618 - 25,056,131 (+)Ensembl
RefSeq Acc Id: XR_001840442
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81138,536,224 - 38,544,749 (+)NCBI
mRatBN7.21125,048,703 - 25,055,640 (+)NCBI
Rnor_6.01125,458,535 - 25,465,931 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005491166
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81138,536,224 - 38,544,749 (+)NCBI
mRatBN7.21125,048,703 - 25,055,640 (+)NCBI
RefSeq Acc Id: XR_010056031
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81138,536,224 - 38,544,749 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22071 BioCyc
Ensembl Genes ENSRNOG00000067170 Ensembl, ENTREZGENE
NCBI Gene LOC102552725 ENTREZGENE
PhenoGen LOC102552725 PhenoGen
RatGTEx ENSRNOG00000067170 RatGTEx
RNAcentral URS0000CCF09D RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102552725  uncharacterized LOC102552725      Symbol and Name status set to provisional 70820 PROVISIONAL