LOC102549099 (uncharacterized LOC102549099) - Rat Genome Database

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Gene: LOC102549099 (uncharacterized LOC102549099) Rattus norvegicus
Analyze
Symbol: LOC102549099
Name: uncharacterized LOC102549099
RGD ID: 7695025
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81557,585,446 - 57,602,118 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1557,584,625 - 57,602,009 (-)EnsemblGRCr8
mRatBN7.21551,175,226 - 51,192,638 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1551,176,153 - 51,192,753 (-)EnsemblmRatBN7.2
Rnor_6.01557,911,189 - 57,913,069 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01561,618,296 - 61,620,059 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera1550,802,928 - 50,804,808 (-)NCBICelera
Cytogenetic Map15q11NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC102549099
239 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
2 5 16 16 34 21 21 11 8 4 4

Sequence


Ensembl Acc Id: ENSRNOT00000088521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1551,189,916 - 51,192,753 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1557,585,505 - 57,600,531 (-)Ensembl
mRatBN7.2 Ensembl1551,176,153 - 51,192,519 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1557,585,465 - 57,587,079 (-)Ensembl
mRatBN7.2 Ensembl1551,176,153 - 51,177,691 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1557,599,248 - 57,602,009 (-)Ensembl
mRatBN7.2 Ensembl1551,191,402 - 51,192,753 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1557,585,330 - 57,600,289 (-)Ensembl
mRatBN7.2 Ensembl1551,176,153 - 51,176,737 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000136942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1557,584,625 - 57,601,900 (-)Ensembl
RefSeq Acc Id: XR_005494122
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81557,585,446 - 57,602,118 (-)NCBI
mRatBN7.21551,176,208 - 51,192,638 (-)NCBI
RefSeq Acc Id: XR_360065
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81557,585,446 - 57,587,229 (-)NCBI
mRatBN7.21551,175,226 - 51,177,888 (-)NCBI
Rnor_6.01557,911,189 - 57,913,069 (-)NCBI
Rnor_5.01561,618,296 - 61,620,059 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-13098 BioCyc
Ensembl Genes ENSRNOG00000066208 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000105832 ENTREZGENE
  ENSRNOT00000111897 ENTREZGENE
NCBI Gene LOC102549099 ENTREZGENE
PhenoGen LOC102549099 PhenoGen
RatGTEx ENSRNOG00000066208 RatGTEx
RNAcentral URS0000CD0901 RNACentral
  URS00022B0B67 RNACentral
  URS00022B3FF9 RNACentral
  URS00022B432F RNACentral
  URS00022B4660 RNACentral
  URS00022B957C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102549099  uncharacterized LOC102549099      Symbol and Name status set to provisional 70820 PROVISIONAL