LOC102548321 (uncharacterized LOC102548321) - Rat Genome Database

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Gene: LOC102548321 (uncharacterized LOC102548321) Rattus norvegicus
Analyze
Symbol: LOC102548321
Name: uncharacterized LOC102548321
RGD ID: 7679868
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8982,161,187 - 82,179,140 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2974,712,617 - 74,729,921 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0980,424,798 - 80,428,682 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0980,197,515 - 80,200,733 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera972,318,097 - 72,321,981 (-)NCBICelera
Cytogenetic Map9q33NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC102548321
163 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)98216882386720295Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat


Expression

RNA-SEQ Expression

ectoderm
mesenchyme
nervous system
renal system
1 3 1 3

Sequence


RefSeq Acc Id: XR_005489200
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8982,167,360 - 82,179,122 (-)NCBI
mRatBN7.2974,712,617 - 74,729,921 (-)NCBI
RefSeq Acc Id: XR_010055027
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8982,161,187 - 82,179,122 (-)NCBI
RefSeq Acc Id: XR_357124
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8982,175,876 - 82,179,140 (-)NCBI
mRatBN7.2974,726,098 - 74,729,921 (-)NCBI
Rnor_6.0980,424,798 - 80,428,682 (-)NCBI
Rnor_5.0980,197,515 - 80,200,733 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-27177 BioCyc
Ensembl Genes ENSRNOG00000083419 ENTREZGENE
Ensembl Transcript ENSRNOT00000135841 ENTREZGENE
  ENSRNOT00000141650 ENTREZGENE
NCBI Gene LOC102548321 ENTREZGENE
PhenoGen LOC102548321 PhenoGen
RatGTEx ENSRNOG00000083419 RatGTEx
RNAcentral URS0000CD03F9 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102548321  uncharacterized LOC102548321      Symbol and Name status set to provisional 70820 PROVISIONAL