LOC102556051 (uncharacterized LOC102556051) - Rat Genome Database

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Gene: LOC102556051 (uncharacterized LOC102556051) Rattus norvegicus
Analyze
Symbol: LOC102556051
Name: uncharacterized LOC102556051
RGD ID: 7668930
Description:
Type: ncrna (Ensembl: lincRNA)
RefSeq Status: MODEL
Previously known as: LOC103691439; uncharacterized LOC103691439
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2232,535,778 - 32,855,354 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0231,677,188 - 31,679,963 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl231,677,123 - 31,679,871 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0250,629,320 - 50,831,518 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera228,813,220 - 28,815,995 (+)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102556051
2096 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
731179Mamtr3Mammary tumor resistance QTL 30.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)23237377043665178Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 2 2 9 2 7 2
Below cutoff 16 21 15 6 15 1 1 7 24 10 7 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005500555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_590856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_599580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000090612
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl231,677,123 - 31,679,871 (+)Ensembl
RefSeq Acc Id: XR_005500555
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,542 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500556
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,542 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500557
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,541 - 32,822,498 (+)NCBI
RefSeq Acc Id: XR_005500558
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,540 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500559
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,622,005 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500560
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,540 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500561
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,554 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500562
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,541 - 32,855,354 (+)NCBI
RefSeq Acc Id: XR_005500563
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,625,766 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500564
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,558 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500565
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,541 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500566
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,622,005 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500567
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,535,778 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500568
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,535,778 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500569
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,553,971 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500570
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,553,971 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500571
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,541 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_005500572
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,539 - 32,817,028 (+)NCBI
RefSeq Acc Id: XR_005500573
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,540 - 32,817,028 (+)NCBI
RefSeq Acc Id: XR_005500574
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,539 - 32,817,024 (+)NCBI
RefSeq Acc Id: XR_005500575
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,540 - 32,817,024 (+)NCBI
RefSeq Acc Id: XR_005500576
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,539 - 32,817,028 (+)NCBI
RefSeq Acc Id: XR_005500577
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,622,005 - 32,820,018 (+)NCBI
RefSeq Acc Id: XR_590856
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,566,562 - 32,820,018 (+)NCBI
Rnor_6.0231,677,188 - 31,679,963 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-54616 BioCyc
Ensembl Genes ENSRNOG00000057995 Ensembl
NCBI Gene LOC102556051 ENTREZGENE
PhenoGen LOC102556051 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC102556051  uncharacterized LOC102556051  LOC103691439  uncharacterized LOC103691439  Data Merged 737654 PROVISIONAL
2014-08-25 LOC103691439  uncharacterized LOC103691439      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-18 LOC102556051  uncharacterized LOC102556051      Symbol and Name status set to provisional 70820 PROVISIONAL