LOC102554555 (uncharacterized LOC102554555) - Rat Genome Database

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Gene: LOC102554555 (uncharacterized LOC102554555) Rattus norvegicus
Analyze
Symbol: LOC102554555
Name: uncharacterized LOC102554555
RGD ID: 7657956
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr893,413,736 - 3,453,589 (+)NCBIGRCr8
mRatBN7.293,177,015 - 3,216,869 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.09771,355 - 820,012 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.09738,600 - 787,235 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera982,119 - 129,146 (+)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102554555
326 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)927457995857951Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001839703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_348857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_589175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_589176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_589177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_589178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_594246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_005488998
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,413,743 - 3,453,589 (+)NCBI
mRatBN7.293,177,020 - 3,216,869 (+)NCBI
RefSeq Acc Id: XR_005488999
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,413,739 - 3,453,589 (+)NCBI
mRatBN7.293,177,015 - 3,216,869 (+)NCBI
RefSeq Acc Id: XR_010054679
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,413,736 - 3,453,589 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28438 BioCyc
NCBI Gene LOC102554555 ENTREZGENE
PhenoGen LOC102554555 PhenoGen
RNAcentral URS0000CCE55F RNACentral
  URS0000CCE67C RNACentral
  URS0000CCEAEB RNACentral
  URS0000CCFF79 RNACentral
  URS0000CD0052 RNACentral
  URS0000CD0821 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102554555  uncharacterized LOC102554555      Symbol and Name status set to provisional 70820 PROVISIONAL