LOC102549101 (uncharacterized LOC102549101) - Rat Genome Database

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Gene: LOC102549101 (uncharacterized LOC102549101) Rattus norvegicus
Analyze
Symbol: LOC102549101
Name: uncharacterized LOC102549101
RGD ID: 7654866
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815101,761,250 - 101,769,377 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21595,356,108 - 95,360,987 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.015103,504,870 - 103,507,313 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015106,943,687 - 106,946,286 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera1594,208,034 - 94,210,477 (+)NCBICelera
Cytogenetic Map15q24NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC102549101
34 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)158885347095840528Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat


Expression

RNA-SEQ Expression

circulatory system
mesenchyme
mesoderm
renal system
reproductive system
2 8 2 6 1

Sequence


RefSeq Acc Id: XR_005494299
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815101,764,821 - 101,769,229 (+)NCBI
mRatBN7.21595,357,677 - 95,360,987 (+)NCBI
RefSeq Acc Id: XR_005494300
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815101,761,250 - 101,769,229 (+)NCBI
mRatBN7.21595,356,108 - 95,360,925 (+)NCBI
RefSeq Acc Id: XR_010058051
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815101,764,821 - 101,769,229 (+)NCBI
RefSeq Acc Id: XR_010058052
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815101,764,821 - 101,769,377 (+)NCBI
RefSeq Acc Id: XR_010058053
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815101,764,821 - 101,769,377 (+)NCBI
RefSeq Acc Id: XR_010058054
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815101,764,821 - 101,769,377 (+)NCBI
RefSeq Acc Id: XR_010058055
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815101,761,250 - 101,769,229 (+)NCBI
RefSeq Acc Id: XR_360241
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815101,764,821 - 101,769,229 (+)NCBI
mRatBN7.21595,357,684 - 95,360,925 (+)NCBI
Rnor_6.015103,504,870 - 103,507,313 (+)NCBI
Rnor_5.015106,943,687 - 106,946,286 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12446 BioCyc
NCBI Gene LOC102549101 ENTREZGENE
PhenoGen LOC102549101 PhenoGen
RNAcentral URS0000CCF521 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102549101  uncharacterized LOC102549101      Symbol and Name status set to provisional 70820 PROVISIONAL