LOC102549747 (MLV-related proviral Env polyprotein-like) - Rat Genome Database

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Gene: LOC102549747 (MLV-related proviral Env polyprotein-like) Rattus norvegicus
Analyze
Symbol: LOC102549747
Name: MLV-related proviral Env polyprotein-like
RGD ID: 7637649
Description: Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81535,329,063 - 35,335,982 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3169,639,781 - 169,648,263 (+)EnsemblGRCr8
mRatBN7.21531,213,982 - 31,215,947 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3149,220,737 - 149,228,279 (+)EnsemblmRatBN7.2
Rnor_6.01537,332,309 - 37,334,853 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01541,179,758 - 41,181,581 (-)NCBIRnor_5.0Rnor_5.0rn5
Cytogenetic Map15p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Variants

.
Variants in LOC102549747
10 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat


Expression

RNA-SEQ Expression

appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
1 2 7 1 26 8 5 3 18 9 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006252084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000108188   ⟹   ENSRNOP00000091758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3169,639,781 - 169,648,263 (+)Ensembl
mRatBN7.2 Ensembl3149,220,737 - 149,228,279 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117896   ⟹   ENSRNOP00000076590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3169,640,165 - 169,648,263 (+)Ensembl
mRatBN7.2 Ensembl3149,220,749 - 149,228,279 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120261   ⟹   ENSRNOP00000093495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3169,640,932 - 169,647,989 (+)Ensembl
mRatBN7.2 Ensembl3149,220,737 - 149,228,279 (+)Ensembl
RefSeq Acc Id: XM_006252084   ⟹   XP_006252146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81535,329,063 - 35,335,982 (-)NCBI
mRatBN7.21531,213,982 - 31,215,947 (-)NCBI
Rnor_6.01537,332,309 - 37,334,853 (-)NCBI
Rnor_5.01541,179,758 - 41,181,581 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_006252146 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000076590.1
  ENSRNOP00000091758.1
  ENSRNOP00000093495.1
RefSeq Acc Id: XP_006252146   ⟸   XM_006252084
- UniProtKB: A0A8I6AGC5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000076590   ⟸   ENSRNOT00000117896
Ensembl Acc Id: ENSRNOP00000091758   ⟸   ENSRNOT00000108188
Ensembl Acc Id: ENSRNOP00000093495   ⟸   ENSRNOT00000120261

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-13610 BioCyc
Ensembl Genes ENSRNOG00000066616 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000108188.1 UniProtKB/TrEMBL
  ENSRNOT00000117896.1 UniProtKB/TrEMBL
  ENSRNOT00000120261.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.210 UniProtKB/TrEMBL
  ENV polyprotein, receptor-binding domain UniProtKB/TrEMBL
InterPro FMuLV_rcpt-bd UniProtKB/TrEMBL
  TLV/ENV_coat_polyprotein UniProtKB/TrEMBL
NCBI Gene LOC102549747 ENTREZGENE
PANTHER BC035947 PROTEIN-RELATED UniProtKB/TrEMBL
  VIRAL ENVELOPE PROTEIN UniProtKB/TrEMBL
Pfam TLV_coat UniProtKB/TrEMBL
PhenoGen LOC102549747 PhenoGen
RatGTEx ENSRNOG00000066616 RatGTEx
Superfamily-SCOP ENV polyprotein, receptor-binding domain UniProtKB/TrEMBL
  Virus ectodomain UniProtKB/TrEMBL
UniProt A0A8I6AGC5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102549747  MLV-related proviral Env polyprotein-like      Symbol and Name status set to provisional 70820 PROVISIONAL