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Gene: LOC102548872 (uncharacterized LOC102548872) Rattus norvegicus

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Symbol:

LOC102548872

Name:

uncharacterized LOC102548872

RGD ID:

7620398

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	101,521,884 - 101,530,026 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	15	95,114,752 - 95,122,461 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	15	103,258,798 - 103,266,844 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	15	106,695,294 - 106,705,490 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	15	93,966,468 - 93,974,702 (+)	NCBI		Celera
Cytogenetic Map	15	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC102548872
69 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	44806773	104695021	Rat
1576315	Schws6	Schwannoma susceptibility QTL 6		0.0069	nervous system integrity trait (VT:0010566)	post-insult time of death (CMO:0002005)	15	60213984	105213984	Rat
1549844	Bss7	Bone structure and strength QTL 7	6.4		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	15	82194914	108192169	Rat
2300326	Plaw1	Placental weight QTL 1	15	0.005	placenta mass (VT:0004257)	placenta wet weight (CMO:0002088)	15	74735564	106469153	Rat
1300118	Bp190	Blood pressure QTL 190	2.94		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	15	88677086	104695021	Rat
1358354	Srcrt5	Stress Responsive Cort QTL 5	3.38		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	82503470	108192169	Rat
70155	Gcs1	Gastric cancer susceptibility QTL1	3.8		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	15	82714037	106778197	Rat
1300120	Kidm7	Kidney mass QTL 7	3.55		kidney mass (VT:0002707)	left kidney wet weight to body weight ratio (CMO:0001954)	15	88677086	104695021	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
631655	Bp126	Blood pressure QTL 126	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	64571127	108192169	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
7411646	Foco21	Food consumption QTL 21	23.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	15	84278281	108192169	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	61710951	106710951	Rat
1581519	Cm59	Cardiac mass QTL 59	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	15	95260808	102247606	Rat
1641889	Colcr6	Colorectal carcinoma resistance QTL 6	2.9	0.0126	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	15	83700787	108192169	Rat
2317050	Aia24	Adjuvant induced arthritis QTL 24	2.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	15	59257087	104257087	Rat
2313080	Bss65	Bone structure and strength QTL 65	3.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	15	67399137	108192169	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat
2317055	Aia10	Adjuvant induced arthritis QTL 10	3.41		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	15	82194914	108192169	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_340899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_360238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_360238

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	101,521,884 - 101,530,026 (+)	NCBI
mRatBN7.2	15	95,114,752 - 95,122,461 (+)	NCBI
Rnor_6.0	15	103,258,798 - 103,266,844 (+)	NCBI
Rnor_5.0	15	106,695,294 - 106,705,490 (+)	NCBI

Sequence:

show sequence

ATACTACCGGAAGCACTAATGAGTACTACCAGTTCGCACTATTCACAGCCTCTTTGAGCTGTGT
CATTACAATTGTTACACTGGAGACAAGTTAAAGATCGTTTAGATTCTTATATTAGAATGCCAAA
GCCCATACAGAATCTAAAACAACAGCACAGAGCTCAGGAGAGATCCCATCTCAGTCCTTGTGCG
GCACTCCCTCACACCGGGCAGCCAGGATGAGGAAGCTTCTGACGTTCTCTCCTGATCTTTACTC
TTTTCCCTCTGATTACCTTTATCCCTGGCATCTTTGTGTAAAAGTCAATTTTAATTAATCTTTC
CACCAACTAAGTGTTAGGAGCAGGTGCGTAGTAAGTGCTCAAGAGTTGATAGATAAGCTTACGC
CCTTACGAATGAGGGCAGAGAAGCAATGTGCCTTTGTAACTCTGAGTTCCACCACTGAGATGCC
CAGCGGGCCTCTGGTCGTGCTTCGCCTGTCTGTGTGCAAAGTCCAAGGCACCCACATTCTTCTG
AGTTAGAGGAGCAACTTCAGGGTACCAGGTCTTCTGTTGAGGTTCTTGACCCATCTGGAACCAA
GGCTTATGCAGGTATATCGACCTCACCCATGTTGATGTTTAGAGAAAAGCAGCAGACTGAACAT
AGAGAAGTGAAGCGGGAGTCCATGCAGCTGCCGTCAGACTCCAAAACACCTCCACCGACACCAA
TATCTAACTCGGTTTCGCTCAGGGTTTGTCAAAACCTAGTCCTGTCTTTTGGATCTCTGTGGCT
CTTGCCCCGTGGCCCACTCACTTGTTCACTCAACTACTGTGGCAATACAATATTATAAAAGTAT
CGTGTACATCCTAAGCGACGGGAACTCCCCCTGGACTCGACAGTCAGAACTAAGAACACAACTC
CATGTCAGTGAAGAGTTAAGGCTGATATCCTACTGTGTGCTCTGTCTGTTTCTTTAAGAGAACG
ATGTAACAGCCCTCTTCACTTGCTTTGGGTTGCCCATGTCCTTAAGTTTTAGAAGCTAAGGTAA
GGTATAGCTGTTGTCTTAAGTCATGTACTCTCCCATGCCTAGACCCGGGAGTCATGCATGTATT
ATGATAATCAATGCTGGGAACAATAAATAGGTTGAAAGTGA

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Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-12459	BioCyc
NCBI Gene	LOC102548872	ENTREZGENE
PhenoGen	LOC102548872	PhenoGen
RNAcentral	URS0000CCF834	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-18	LOC102548872	uncharacterized LOC102548872			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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