LOC102552290 (uncharacterized LOC102552290) - Rat Genome Database

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Gene: LOC102552290 (uncharacterized LOC102552290) Rattus norvegicus
Analyze
Symbol: LOC102552290
Name: uncharacterized LOC102552290
RGD ID: 7619887
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81652,180,882 - 52,207,126 (+)NCBIGRCr8
mRatBN7.21645,448,245 - 45,462,686 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01648,591,475 - 48,609,215 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01648,303,788 - 48,327,832 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1643,451,541 - 43,469,294 (+)NCBICelera
Cytogenetic Map16q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in LOC102552290
98 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
631833Sach2Saccharin preference QTL 240.01consumption behavior trait (VT:0002069)calculated saccharin drink intake rate (CMO:0001613)164302484250166018Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_597216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_005494683
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,195,682 (+)NCBI
mRatBN7.21645,448,245 - 45,462,686 (+)NCBI
RefSeq Acc Id: XR_005494684
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
mRatBN7.21645,448,245 - 45,458,958 (+)NCBI
RefSeq Acc Id: XR_005494687
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
mRatBN7.21645,448,245 - 45,458,957 (+)NCBI
RefSeq Acc Id: XR_005494689
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,195,682 (+)NCBI
mRatBN7.21645,448,245 - 45,462,686 (+)NCBI
RefSeq Acc Id: XR_005494690
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
mRatBN7.21645,448,245 - 45,458,958 (+)NCBI
RefSeq Acc Id: XR_010058704
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058705
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058706
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058707
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,207,126 (+)NCBI
RefSeq Acc Id: XR_010058708
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058709
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058710
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058711
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058712
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058713
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058714
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058715
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058716
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058717
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058718
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058719
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI
RefSeq Acc Id: XR_010058720
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81652,180,882 - 52,191,660 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-11365 BioCyc
NCBI Gene LOC102552290 ENTREZGENE
PhenoGen LOC102552290 PhenoGen
RNAcentral URS0000CCF28F RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102552290  uncharacterized LOC102552290      Symbol and Name status set to provisional 70820 PROVISIONAL