LOC102547440 (uncharacterized LOC102547440) - Rat Genome Database

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Gene: LOC102547440 (uncharacterized LOC102547440) Rattus norvegicus
Analyze
Symbol: LOC102547440
Name: uncharacterized LOC102547440
RGD ID: 7613297
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81597,370,566 - 97,463,360 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21590,962,736 - 91,056,107 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01598,971,971 - 99,072,728 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015102,439,474 - 102,531,788 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera1589,862,324 - 89,961,740 (-)NCBICelera
Cytogenetic Map15q23NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC102547440
813 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)158885347095840528Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat


Expression

RNA-SEQ Expression

circulatory system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
3 1 5 4 1 1 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001841446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_001841446
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,360 (-)NCBI
mRatBN7.21590,963,305 - 91,056,107 (-)NCBI
Rnor_6.01598,971,971 - 99,072,725 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001841447
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,360 (-)NCBI
mRatBN7.21590,962,741 - 91,056,107 (-)NCBI
Rnor_6.01598,971,971 - 99,072,728 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001841448
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,360 (-)NCBI
mRatBN7.21590,962,739 - 91,056,107 (-)NCBI
Rnor_6.01598,971,971 - 99,072,723 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001841450
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,334 (-)NCBI
mRatBN7.21590,962,742 - 91,056,107 (-)NCBI
Rnor_6.01598,971,971 - 99,072,727 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001841451
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,330 (-)NCBI
mRatBN7.21590,962,741 - 91,056,107 (-)NCBI
Rnor_6.01598,971,971 - 99,072,728 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005494286
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,328 (-)NCBI
mRatBN7.21590,962,743 - 91,056,107 (-)NCBI
RefSeq Acc Id: XR_005494288
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,334 (-)NCBI
mRatBN7.21590,962,744 - 91,056,100 (-)NCBI
RefSeq Acc Id: XR_005494289
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,342 (-)NCBI
mRatBN7.21590,962,741 - 91,056,107 (-)NCBI
RefSeq Acc Id: XR_005494292
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,315 (-)NCBI
mRatBN7.21590,962,743 - 91,056,087 (-)NCBI
RefSeq Acc Id: XR_005494293
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,342 (-)NCBI
mRatBN7.21590,962,736 - 91,056,107 (-)NCBI
RefSeq Acc Id: XR_005494294
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,342 (-)NCBI
mRatBN7.21590,962,737 - 91,056,107 (-)NCBI
RefSeq Acc Id: XR_010058024
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,360 (-)NCBI
RefSeq Acc Id: XR_010058025
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,334 (-)NCBI
RefSeq Acc Id: XR_010058026
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,342 (-)NCBI
RefSeq Acc Id: XR_010058027
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,334 (-)NCBI
RefSeq Acc Id: XR_010058028
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,370,566 - 97,463,360 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12516 BioCyc
NCBI Gene LOC102547440 ENTREZGENE
PhenoGen LOC102547440 PhenoGen
RNAcentral URS0000CCE968 RNACentral
  URS0000CCEF3E RNACentral
  URS0000CCFC79 RNACentral
  URS0000CCFD5C RNACentral
  URS0000CCFD96 RNACentral
  URS0000CCFF8A RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102547440  uncharacterized LOC102547440      Symbol and Name status set to provisional 70820 PROVISIONAL