LOC102556284 (uncharacterized LOC102556284) - Rat Genome Database

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Gene: LOC102556284 (uncharacterized LOC102556284) Rattus norvegicus
Analyze
Symbol: LOC102556284
Name: uncharacterized LOC102556284
RGD ID: 7577763
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81585,763,769 - 85,878,320 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21579,389,459 - 79,463,606 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01587,016,906 - 87,090,954 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01590,516,336 - 90,590,120 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera1578,564,515 - 78,638,876 (-)NCBICelera
Cytogenetic Map15q21NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC102556284
565 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1581555Eae19Experimental allergic encephalomyelitis QTL 194.7nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)157630609990088744Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat


Expression

RNA-SEQ Expression

appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
1 9 7 3 23 17 6 3 6 11 3 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_005494212
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,318 (-)NCBI
mRatBN7.21579,436,656 - 79,463,604 (-)NCBI
RefSeq Acc Id: XR_005494213
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,317 (-)NCBI
mRatBN7.21579,436,656 - 79,463,604 (-)NCBI
RefSeq Acc Id: XR_005494214
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,315 (-)NCBI
mRatBN7.21579,436,656 - 79,463,603 (-)NCBI
RefSeq Acc Id: XR_005494215
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,317 (-)NCBI
mRatBN7.21579,436,656 - 79,463,604 (-)NCBI
RefSeq Acc Id: XR_005494216
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,792,874 - 85,878,318 (-)NCBI
mRatBN7.21579,389,459 - 79,463,605 (-)NCBI
RefSeq Acc Id: XR_005494217
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,318 (-)NCBI
mRatBN7.21579,436,656 - 79,463,604 (-)NCBI
RefSeq Acc Id: XR_005494218
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,312 (-)NCBI
mRatBN7.21579,436,656 - 79,463,600 (-)NCBI
RefSeq Acc Id: XR_005494220
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,792,874 - 85,878,318 (-)NCBI
mRatBN7.21579,389,459 - 79,463,605 (-)NCBI
RefSeq Acc Id: XR_005494221
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,792,874 - 85,878,315 (-)NCBI
mRatBN7.21579,389,459 - 79,463,602 (-)NCBI
RefSeq Acc Id: XR_005494222
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,317 (-)NCBI
mRatBN7.21579,436,656 - 79,463,604 (-)NCBI
RefSeq Acc Id: XR_005494223
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,318 (-)NCBI
mRatBN7.21579,436,656 - 79,463,605 (-)NCBI
RefSeq Acc Id: XR_005494224
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,792,874 - 85,878,318 (-)NCBI
mRatBN7.21579,389,459 - 79,463,604 (-)NCBI
RefSeq Acc Id: XR_005494225
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,792,874 - 85,878,317 (-)NCBI
mRatBN7.21579,389,459 - 79,463,604 (-)NCBI
RefSeq Acc Id: XR_005494226
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,792,874 - 85,878,317 (-)NCBI
mRatBN7.21579,389,459 - 79,463,604 (-)NCBI
RefSeq Acc Id: XR_005494227
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,792,874 - 85,878,317 (-)NCBI
mRatBN7.21579,389,459 - 79,463,604 (-)NCBI
RefSeq Acc Id: XR_005494228
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,792,874 - 85,878,317 (-)NCBI
mRatBN7.21579,389,459 - 79,463,603 (-)NCBI
RefSeq Acc Id: XR_005494229
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,859,646 - 85,878,318 (-)NCBI
mRatBN7.21579,444,931 - 79,463,605 (-)NCBI
RefSeq Acc Id: XR_005494230
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,316 (-)NCBI
mRatBN7.21579,436,656 - 79,463,603 (-)NCBI
RefSeq Acc Id: XR_005494231
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,859,646 - 85,878,316 (-)NCBI
mRatBN7.21579,444,931 - 79,463,603 (-)NCBI
RefSeq Acc Id: XR_010057999
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,763,769 - 85,878,319 (-)NCBI
RefSeq Acc Id: XR_596253
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,320 (-)NCBI
mRatBN7.21579,436,656 - 79,463,606 (-)NCBI
Rnor_6.01587,065,820 - 87,090,951 (-)NCBI
Sequence:
RefSeq Acc Id: XR_596257
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,319 (-)NCBI
mRatBN7.21579,436,656 - 79,463,605 (-)NCBI
Rnor_6.01587,065,820 - 87,090,951 (-)NCBI
Sequence:
RefSeq Acc Id: XR_596258
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,318 (-)NCBI
mRatBN7.21579,436,656 - 79,463,604 (-)NCBI
Rnor_6.01587,065,820 - 87,090,951 (-)NCBI
Sequence:
RefSeq Acc Id: XR_596259
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,319 (-)NCBI
mRatBN7.21579,436,656 - 79,463,605 (-)NCBI
Rnor_6.01587,065,820 - 87,090,951 (-)NCBI
Sequence:
RefSeq Acc Id: XR_596260
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,851,893 - 85,878,318 (-)NCBI
mRatBN7.21579,436,656 - 79,463,604 (-)NCBI
Rnor_6.01587,065,820 - 87,090,616 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12710 BioCyc
NCBI Gene LOC102556284 ENTREZGENE
PhenoGen LOC102556284 PhenoGen
RNAcentral URS0000CCE401 RNACentral
  URS0000CCEADC RNACentral
  URS0000CCF454 RNACentral
  URS0000CCF485 RNACentral
  URS0000CCF94B RNACentral
  URS0000CCFB7B RNACentral
  URS0000CCFC19 RNACentral
  URS0000CD0427 RNACentral
  URS0000CD0507 RNACentral
  URS0000CD0774 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102556284  uncharacterized LOC102556284      Symbol and Name status set to provisional 70820 PROVISIONAL