LOC102547888 (uncharacterized LOC102547888) - Rat Genome Database

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Gene: LOC102547888 (uncharacterized LOC102547888) Rattus norvegicus
Analyze
Symbol: LOC102547888
Name: uncharacterized LOC102547888
RGD ID: 7572036
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81540,469,249 - 40,516,987 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21536,293,182 - 36,340,994 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01545,305,608 - 45,324,154 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01546,252,321 - 46,292,950 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera1535,985,858 - 36,025,744 (+)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC102547888
201 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154046315285463152Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat


Expression

RNA-SEQ Expression

circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
3 8 1 14 11 7 9 3 14 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001841356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_340684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_005494023
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81540,469,261 - 40,516,987 (+)NCBI
mRatBN7.21536,293,182 - 36,340,994 (+)NCBI
RefSeq Acc Id: XR_010058157
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81540,484,706 - 40,516,987 (+)NCBI
RefSeq Acc Id: XR_010058158
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81540,484,706 - 40,516,987 (+)NCBI
RefSeq Acc Id: XR_010058159
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81540,484,724 - 40,516,987 (+)NCBI
RefSeq Acc Id: XR_010058160
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81540,484,707 - 40,516,987 (+)NCBI
RefSeq Acc Id: XR_010058161
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81540,484,703 - 40,516,987 (+)NCBI
RefSeq Acc Id: XR_010058162
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81540,469,249 - 40,516,987 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-13465 BioCyc
Ensembl Genes ENSRNOG00000085721 ENTREZGENE
Ensembl Transcript ENSRNOT00000142646 ENTREZGENE
NCBI Gene LOC102547888 ENTREZGENE
PhenoGen LOC102547888 PhenoGen
RatGTEx ENSRNOG00000085721 RatGTEx
RNAcentral URS0000CCE16B RNACentral
  URS0000CCEE15 RNACentral
  URS0000CD01F5 RNACentral
  URS0000CD07ED RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102547888  uncharacterized LOC102547888      Symbol and Name status set to provisional 70820 PROVISIONAL