LOC102547244 (uncharacterized LOC102547244) - Rat Genome Database

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Pathways
Gene: LOC102547244 (uncharacterized LOC102547244) Rattus norvegicus
Analyze
Symbol: LOC102547244
Name: uncharacterized LOC102547244
RGD ID: 7563047
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815103,658,661 - 103,676,811 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21597,266,696 - 97,271,473 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.015105,467,932 - 105,530,053 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015108,872,233 - 108,930,539 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera1596,031,719 - 96,093,603 (-)NCBICelera
Cytogenetic Map15q24NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC102547244
17 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
sensory system
visual system
2 1 1 14 29 9 8 10 18 6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001841466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_340914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_360254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_001841468
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815103,658,661 - 103,676,811 (-)NCBI
mRatBN7.21597,266,696 - 97,271,473 (-)NCBI
Rnor_6.015105,511,777 - 105,530,050 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12404 BioCyc
NCBI Gene LOC102547244 ENTREZGENE
PhenoGen LOC102547244 PhenoGen
RNAcentral URS0000CCE253 RNACentral
  URS0000CCE2E3 RNACentral
  URS0000CCE61F RNACentral
  URS0000CCE66D RNACentral
  URS0000CCE922 RNACentral
  URS0000CCEA91 RNACentral
  URS0000CCEBA4 RNACentral
  URS0000CCEDD5 RNACentral
  URS0000CCEE92 RNACentral
  URS0000CCEE9F RNACentral
  URS0000CCF292 RNACentral
  URS0000CCF797 RNACentral
  URS0000CCF7E2 RNACentral
  URS0000CCFA53 RNACentral
  URS0000CCFAF1 RNACentral
  URS0000CCFC93 RNACentral
  URS0000CCFF2E RNACentral
  URS0000CD0003 RNACentral
  URS0000CD0038 RNACentral
  URS0000CD02F4 RNACentral
  URS0000CD02FD RNACentral
  URS0000CD0598 RNACentral
  URS0000CD062D RNACentral
  URS0000CD093C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102547244  uncharacterized LOC102547244      Symbol and Name status set to provisional 70820 PROVISIONAL