LOC102547443 (uncharacterized LOC102547443) - Rat Genome Database

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Gene: LOC102547443 (uncharacterized LOC102547443) Rattus norvegicus
Analyze
Symbol: LOC102547443
Name: uncharacterized LOC102547443
RGD ID: 7561344
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81657,637,388 - 57,669,730 (-)NCBIGRCr8
mRatBN7.21650,935,313 - 50,966,211 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01653,975,409 - 53,998,388 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01653,680,012 - 53,712,122 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1648,838,421 - 48,861,400 (-)NCBICelera
Cytogenetic Map16q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102547443
71 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001834007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_596479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_597235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_001841632
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81657,645,665 - 57,669,730 (-)NCBI
mRatBN7.21650,942,144 - 50,966,211 (-)NCBI
Rnor_6.01653,975,409 - 53,998,384 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005494799
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81657,637,388 - 57,669,730 (-)NCBI
mRatBN7.21650,935,313 - 50,966,211 (-)NCBI
RefSeq Acc Id: XR_005494800
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81657,637,388 - 57,669,730 (-)NCBI
mRatBN7.21650,935,313 - 50,966,211 (-)NCBI
RefSeq Acc Id: XR_005494801
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81657,645,665 - 57,669,730 (-)NCBI
mRatBN7.21650,942,144 - 50,966,211 (-)NCBI
RefSeq Acc Id: XR_005494802
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81657,645,665 - 57,669,730 (-)NCBI
mRatBN7.21650,942,144 - 50,966,211 (-)NCBI
RefSeq Acc Id: XR_005494804
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81657,645,665 - 57,669,730 (-)NCBI
mRatBN7.21650,942,144 - 50,966,211 (-)NCBI
RefSeq Acc Id: XR_005494805
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81657,645,665 - 57,669,730 (-)NCBI
mRatBN7.21650,942,144 - 50,966,211 (-)NCBI
RefSeq Acc Id: XR_005494806
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81657,645,665 - 57,669,730 (-)NCBI
mRatBN7.21650,942,144 - 50,966,211 (-)NCBI
RefSeq Acc Id: XR_010058400
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81657,637,388 - 57,669,730 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-11261 BioCyc
NCBI Gene LOC102547443 ENTREZGENE
PhenoGen LOC102547443 PhenoGen
RNAcentral URS0000CCE500 RNACentral
  URS0000CCED23 RNACentral
  URS0000CCFA28 RNACentral
  URS0000CCFD90 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102547443  uncharacterized LOC102547443      Symbol and Name status set to provisional 70820 PROVISIONAL