LOC102547864 (uncharacterized LOC102547864) - Rat Genome Database

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Gene: LOC102547864 (uncharacterized LOC102547864) Rattus norvegicus
Analyze
Symbol: LOC102547864
Name: uncharacterized LOC102547864
RGD ID: 7552264
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81572,960,709 - 72,998,346 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21566,551,333 - 66,593,853 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01573,945,841 - 73,988,928 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01577,510,981 - 77,553,070 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera1565,998,590 - 66,037,493 (+)NCBICelera
Cytogenetic Map15q21NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC102547864
366 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1560213984105213984Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)156244089297773284Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)1572716871101425383Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155720389580107161Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)154367724488677244Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1564571127108192169Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154046315285463152Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1572716871101425383Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)1561710951106710951Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1559257087104257087Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)154367724488677244Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1567399137108192169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)154367724488677244Rat


Expression

RNA-SEQ Expression

mesenchyme
renal system
5 5

Sequence


RefSeq Acc Id: XR_001841398
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81572,960,709 - 72,998,346 (+)NCBI
mRatBN7.21566,551,333 - 66,593,853 (+)NCBI
Rnor_6.01573,945,841 - 73,988,928 (+)NCBI
Sequence:
RefSeq Acc Id: XR_010057982
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81572,960,714 - 72,998,346 (+)NCBI
RefSeq Acc Id: XR_010057983
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81572,960,714 - 72,998,346 (+)NCBI
RefSeq Acc Id: XR_360129
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81572,960,714 - 72,998,346 (+)NCBI
mRatBN7.21566,551,340 - 66,593,853 (+)NCBI
Rnor_6.01573,945,841 - 73,988,928 (+)NCBI
Rnor_5.01577,510,981 - 77,553,070 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12896 BioCyc
NCBI Gene LOC102547864 ENTREZGENE
PhenoGen LOC102547864 PhenoGen
RNAcentral URS0000CCFF28 RNACentral
  URS0000CD0571 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102547864  uncharacterized LOC102547864      Symbol and Name status set to provisional 70820 PROVISIONAL