LOC102547864 (uncharacterized LOC102547864)

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Gene: LOC102547864 (uncharacterized LOC102547864) Rattus norvegicus

Analyze

Symbol:

LOC102547864

Name:

uncharacterized LOC102547864

RGD ID:

7552264

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	15	66,551,333 - 66,593,853 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	15	73,945,841 - 73,988,928 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	15	77,510,981 - 77,553,070 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	15	65,998,590 - 66,037,493 (+)	NCBI		Celera
Cytogenetic Map	15	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC102547864
389 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
2293691	Bmd37	Bone mineral density QTL 37	6.6	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	15	33611058	71477291	Rat
2293686	Bmd36	Bone mineral density QTL 36	7.4	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	15	33611058	71477291	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	34054139	79054139	Rat
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	40631268	98288169	Rat
724545	Niddm54	Non-insulin dependent diabetes mellitus QTL 54		0.02	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	50794494	73699215	Rat
2317050	Aia24	Adjuvant induced arthritis QTL 24	2.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	15	52847908	73690657	Rat
1576315	Schws6	Schwannoma susceptibility QTL 6		0.0069	nervous system integrity trait (VT:0010566)	post-insult time of death (CMO:0002005)	15	53806152	98806152	Rat
61477	Aia4	Adjuvant induced arthritis QTL 4	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	15	55596089	91365858	Rat
631516	Gluco31	Glucose level QTL 31	7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	55596089	95018120	Rat
631655	Bp126	Blood pressure QTL 126	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	58156477	101769107	Rat
2313080	Bss65	Bone structure and strength QTL 65	3.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	15	60990468	73690657	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001841398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001846338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_340807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_360129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACYVU010000272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

XR_001841398

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	15	66,551,333 - 66,593,853 (+)	NCBI
Rnor_6.0	15	73,945,841 - 73,988,928 (+)	NCBI

Sequence:

show sequence

AATCCTTCTAAGAACAATACCTTTTTGTACCTTCCACATTGGATTATTTTAGCCTATCGTCTTA
CTCATTCTGTTTTCAAGAAGTTTATTTCTATCACCTTTTTTATATGAGCAGAATGATTATGTTC
AATCATAAGTAGTGCCAATATATGAGAAACATAATTGTATGTGAGCTCCAAACATGTTTATTTT
TTATATGATTGAAAATTTATTTCTGTGGTATATATGAACAACAGTAACCAGTGATCCTTAATCT
TCAATTGTGAAAGAGCTAGATGCTTCAAATATGTCCCAAAAATGTCACCATTTCTGTCTTCATT
AAACTTTGCATTTAACATTTAATTACTATATTCAAAAGCAATAATTTTTTGTGCAGAAGCCCTG
AAAATTTCCCATAAATTACACATTAATAAATAATTGCGTGAAACACTCTTCATCTAAAGGCATT
TCAGAAGTGCATGCTATGTCACATGTGAAAAAGTAGTTGGAAGAGGGAAAAGATGCTATGTCTT
TGTTCAGTGTTCTGACCTATGAACATCTGAATGATTAGTAGTCTAAAGTGAGTCTGAAATAACC
AGTCCAGCACAGGGGACCTGAACAGAGAGAGATCTGGCCTGAGTTGACCACTAGTAGTCCGGTC
TCTTGGGCAGGGAAACAAAGCGCAGACTGGAAGAACCCTCCTAGAACACTGGGCCCCAAAGCAG
AGTGAGCCTAAGAAAACAAACATCCTTCTCACAAGGGACCAAATGGGTAGGTTGGGAAGAGATC
AAGTCTCAGATGACCATGAGACCAGTGCTAAGGGGCATAGTCAAAGAGCTAGTCTTAGAGGGCT
ACTATTATGACACCATAATGCACAAACATGACAAAGCAATCCTGAAATGACCCCACTAACTCTG
AGACCTTGGGTGTCATTAAGAGGAGCAAGTACATGGTGGAGAAATGGAAGAGAAAGAGAAACAG
AAGGATGCCCGTCCAATGAAGAGAGGCAAAACTGGAGACTCAAGGTAGTGAGTGATGATGCCTC
AGCTCTCCTGTGTCAGTGGGGATGAAGAAGTACTTTTTCCACAAAGGAAGTTTCCCTGGACATA
GAGAAAACAGTCTACACTGAACTCTACAGTCAACTTCCAGCCTTCTAGTTGAAGTCACAAGAAG
AAAAAGTTCCCAGGACATGAACAACACCAAGAATAAACATCATAGAATGATGGAAGGGAGAAAC
TAGAAACTTGCCTTGTTTGGCCAAAGTCTGGCATTAACAGATGAGCATGCAGATGGGAGCCCAC
AGGAGGAAGCATACATTCTTGGGGAACACACATATTGTGGAGAACTTACTAAAGGAGACATAAA
CGGAAATTGTGGAAGGATCTTTCCCTTATGGGTTCTAGGTAAGTCTTACAAGAGATCATTCTGG
AGTATCAGGATGTTATTCCTGGAGGACAGTGTATCACGAGTTACTAAGAATGAAGGAAACTCAA
TTTAAACTGAAAGATAAAAATGACATCTATGGTCAAGGTTGGAGGAGGAAGTCTCAATAATGTG
AGAGTAAGAGAGAGGGTACACAGTGGAAATACCATAATGGAACATTCATACATAAGCGTTGTGT
AAAGACCTATAGGATGTCTCAGAGATATATTGGTAAGTGCTTATCTTGCAATACTCACCCGAGT
ATGATCCCTAGTATGTAGCCTTCCTCTAACAAGCAAAGCATGTTCACACAC

hide sequence

RefSeq Acc Id:

XR_360129

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	15	66,551,340 - 66,593,853 (+)	NCBI
Rnor_6.0	15	73,945,841 - 73,988,928 (+)	NCBI
Rnor_5.0	15	77,510,981 - 77,553,070 (+)	NCBI

Sequence:

show sequence

AATCCTTCTAAGAACAATACCTTTTTGTACCTTCCACATTGGATTATTTTAGCCTATCGTCTTA
CTCATTCTGTTTTCAAGAAGTTTATTTCTATCACCTTTTTTATATGAGCAGAATGATTATGTTC
AATCATAAGTAGTGCCAATATATGAGAAACATAATTGTATGTGAGCTCCAAACATGTTTATTTT
TTATATGATTGAAAATTTATTTCTGTGGTATATATGAACAACAGTAACCAGTGATCCTTAATCT
TCAATTGTGAAAGAGCTAGATGCTTCAAATATGTCCCAAAAATGTCACCATTTCTGTCTTCATT
AAACTTTGCATTTAACATTTAATTACTATATTCAAAAGCAATAATTTTTTGTGCAGAAGCCCTG
AAAATTTCCCATAAATTACACATTAATAAATAATTGCGTGAAACACTCTTCATCTAAAGGCATT
TCAGAAGTGCATGCTATGTCACATGTGAAAAAGTAGTTGGAAGAGGGAAAAGATGCTATGTCTT
TGTTCAGTGTTCTGACCTATGAACATCTGAATGATTAGTAGTCTAAAGTGAGTCTGAAATAACC
AGTCCAGCACAGGGGACCTGAACAGAGAGAGATCTGGCCTGAGTTGACCACTAGTAGTCCGGTC
TCTTGGGCAGGGAAACAAAGCGCAGACTGGAAGAACCCTCCTAGAACACTGGGCCCCAAAGCAG
AGTGAGCCTAAGAAAACAAACATCCTTCTCACAAGGGACCAAATGGGTAGGTTGGGAAGAGATC
AAGTCTCAGATGACCATGAGACCAGTGCTAAGGGGCATAGTCAAAGAGCTAGTCTTAGAGGGCT
ACTATTATGACACCATAATGCACAAACATGACAAAGCAATCCTGAAATGACCCCACTAACTCTG
AGACCTTGGGTGTCATTAAGAGGAGCAAGTACATGGTGGAGAAATGGAAGAGAAAGAGAAACAG
AAGGATGCCCGTCCAATGAAGAGAGGCAAAACTGGAGACTCAAGGATGCCTCAGCTCTCCTGTG
TCAGTGGGGATGAAGAAGTACTTTTTCCACAAAGGAAGTTTCCCTGGACATAGAGAAAACAGTC
TACACTGAACTCTACAGTCAACTTCCAGCCTTCTAGTTGAAGTCACAAGAAGAAAAAGTTCCCA
GGACATGAACAACACCAAGAATAAACATCATAGAATGATGGAAGGGAGAAACTAGAAACTTGCC
TTGTTTGGCCAAAGTCTGGCATTAACAGATGAGCATGCAGATGGGAGCCCACAGGAGGAAGCAT
ACATTCTTGGGGAACACACATATTGTGGAGAACTTACTAAAGGAGACATAAACGGAAATTGTGG
AAGGATCTTTCCCTTATGGGTTCTAGGTAAGTCTTACAAGAGATCATTCTGGAGTATCAGGATG
TTATTCCTGGAGGACAGTGTATCACGAGTTACTAAGAATGAAGGAAACTCAATTTAAACTGAAA
GATAAAAATGACATCTATGGTCAAGGTTGGAGGAGGAAGTCTCAATAATGTGAGAGTAAGAGAG
AGGGTACACAGTGGAAATACCATAATGGAACATTCATACATAAGCGTTGTGTAAAGACCTATAG
GATGTCTCAGAGATATATTGGTAAGTGCTTATCTTGCAATACTCACCCGAGTATGATCCCTAGT
ATGTAGCCTTCCTCTAACAAGCAAAGCATGTTCACACAC

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-12896	BioCyc
NCBI Gene	LOC102547864	ENTREZGENE
PhenoGen	LOC102547864	PhenoGen
RNAcentral	URS0000CCFF28	RNACentral
	URS0000CD0571	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-17	LOC102547864	uncharacterized LOC102547864			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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