LOC102548369 (40S ribosomal protein S16-like) - Rat Genome Database

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Gene: LOC102548369 (40S ribosomal protein S16-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC102548369
Name: 40S ribosomal protein S16-like
RGD ID: 7517571
Description: Predicted to be involved in translation.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC691983; similar to 40S ribosomal protein S16; small ribosomal subunit protein uS9-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81598,666,920 - 98,667,428 (-)NCBIGRCr8
mRatBN7.21592,259,763 - 92,260,218 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1592,259,763 - 92,260,203 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.015100,303,331 - 100,303,838 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015103,760,163 - 103,760,647 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41599,937,431 - 99,937,988 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1591,124,175 - 91,124,681 (-)NCBICelera
Cytogenetic Map15q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC102548369
14 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)158885347095840528Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000041344   ⟹   ENSRNOP00000065877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1592,259,763 - 92,260,203 (-)Ensembl
Rnor_6.0 Ensembl15100,303,346 - 100,303,807 (-)Ensembl
RefSeq Acc Id: XM_039094078   ⟹   XP_038950006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81598,666,920 - 98,667,428 (-)NCBI
mRatBN7.21592,259,763 - 92,260,218 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038950006 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065877
  ENSRNOP00000065877.2
RefSeq Acc Id: XP_038950006   ⟸   XM_039094078
- UniProtKB: M0R8S7 (UniProtKB/TrEMBL),   Q5XFV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000065877   ⟸   ENSRNOT00000041344

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R8S7-F1-model_v2 AlphaFold M0R8S7 1-153 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7517571 AgrOrtholog
BioCyc Gene G2FUF-12478 BioCyc
Ensembl Genes ENSRNOG00000031960 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041344.5 UniProtKB/TrEMBL
Gene3D-CATH 3.30.230.10 UniProtKB/TrEMBL
InterPro Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
  Ribosomal_S9 UniProtKB/TrEMBL
  Ribosomal_S9_CS UniProtKB/TrEMBL
NCBI Gene LOC102548369 ENTREZGENE
PANTHER PTHR21569 UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN S16 UniProtKB/TrEMBL
Pfam Ribosomal_S9 UniProtKB/TrEMBL
PhenoGen LOC102548369 PhenoGen
PROSITE RIBOSOMAL_S9 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031960 RatGTEx
Superfamily-SCOP SSF54211 UniProtKB/TrEMBL
UniProt M0R8S7 ENTREZGENE, UniProtKB/TrEMBL
  Q5XFV9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 LOC102548369  40S ribosomal protein S16-like  LOC691983  similar to 40S ribosomal protein S16  Data merged from RGD:1593309 737654 PROVISIONAL
2013-12-17 LOC102548369  40S ribosomal protein S16-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC691983  similar to 40S ribosomal protein S16  LOC686806  similar to 40S ribosomal protein S16  Data merged from RGD:1592542 1643240 APPROVED
2006-11-20 LOC691983  similar to 40S ribosomal protein S16      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686806  similar to 40S ribosomal protein S16      Symbol and Name status set to provisional 70820 PROVISIONAL