Ptprf (protein tyrosine phosphatase receptor type F) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ptprf (protein tyrosine phosphatase receptor type F) Mus musculus
Analyze
Symbol: Ptprf
Name: protein tyrosine phosphatase receptor type F
RGD ID: 737214
MGI Page MGI
Description: Enables chondroitin sulfate proteoglycan binding activity. Acts upstream of or within neuron projection regeneration and regulation of axon regeneration. Located in neuron projection and neuronal cell body. Is expressed in several structures, including adrenal gland; alimentary system epithelium; central nervous system; genitourinary system; and nasal cavity epithelium. Human ortholog(s) of this gene implicated in hyperinsulinism. Orthologous to human PTPRF (protein tyrosine phosphatase receptor type F).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA591035; LAR; LARS; leukocyte antigen-related (LAR) PTP receptor; leukocyte common antigen related; receptor-type tyrosine-protein phosphatase F; RP; RPTP-LAR
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394118,065,410 - 118,148,602 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4118,065,410 - 118,148,602 (-)EnsemblGRCm39 Ensembl
GRCm384118,208,213 - 118,291,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4118,208,213 - 118,291,405 (-)EnsemblGRCm38mm10GRCm38
MGSCv374117,880,818 - 117,964,002 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,707,733 - 117,775,378 (-)NCBIMGSCv36mm8
Celera4116,924,108 - 117,000,571 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map454.47NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldrin  (EXP)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
arsenite(3-)  (EXP,ISO)
atrazine  (ISO)
azoxystrobin  (ISO)
benzbromarone  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (ISO)
butyric acid  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
casticin  (EXP)
CGP 52608  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
choline  (EXP)
chromium(6+)  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (EXP,ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
corn oil  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
dicrotophos  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenofibrate  (ISO)
fipronil  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
fonofos  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
gallic acid  (ISO)
gentamycin  (ISO)
glutathione  (ISO)
glyphosate  (ISO)
graphite  (ISO)
indometacin  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
ketoconazole  (ISO)
L-ethionine  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
maneb  (EXP)
methapyrilene  (ISO)
methoxychlor  (ISO)
methylmercury(1+)  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
omeprazole  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
parathion  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (ISO)
phenobarbital  (EXP)
phenylephrine  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
propiconazole  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (EXP)
Soman  (ISO)
sulindac sulfide  (ISO)
T-2 toxin  (ISO)
tamibarotene  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
tetrachloromethane  (EXP,ISO)
thifluzamide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
Triptolide  (ISO)
triptonide  (EXP)
triticonazole  (ISO)
troglitazone  (EXP)
tunicamycin  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal basisphenoid bone morphology  (IAGP)
abnormal cell differentiation  (IAGP)
abnormal first pharyngeal arch morphology  (IAGP)
abnormal frontal bone morphology  (IAGP)
abnormal interparietal bone morphology  (IAGP)
abnormal involution of the mammary gland  (IAGP)
abnormal mammary gland alveolus morphology  (IAGP)
abnormal mandible morphology  (IAGP)
abnormal mandibular symphysis morphology  (IAGP)
abnormal Meckel's cartilage morphology  (IAGP)
abnormal milk ejection  (IAGP)
abnormal nasal capsule morphology  (IAGP)
abnormal nest building behavior  (IAGP)
abnormal neurocranium morphology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal palatal mesenchymal cell proliferation  (IAGP)
abnormal palate bone morphology  (IAGP)
abnormal parietal bone morphology  (IAGP)
abnormal peripheral nervous system regeneration  (IAGP)
abnormal premaxilla morphology  (IAGP)
abnormal retina ganglion cell morphology  (IAGP)
abnormal retina neuronal layer morphology  (IAGP)
abnormal spatial learning  (IAGP)
abnormal tongue morphology  (IAGP)
abnormal ureter development  (IAGP)
abnormal ureter morphology  (IAGP)
absent nasal capsule  (IAGP)
absent palatine bone  (IAGP)
absent pterygoid process  (IAGP)
absent tongue  (IAGP)
cleft secondary palate  (IAGP)
decreased tongue size  (IAGP)
delayed peripheral nervous system regeneration  (IAGP)
dilated ureter  (IAGP)
disorganized retina inner nuclear layer  (IAGP)
double ureter  (IAGP)
duplex kidney  (IAGP)
exencephaly  (IAGP)
eyelids open at birth  (IAGP)
glossoptosis  (IAGP)
hydroureter  (IAGP)
hyperactivity  (IAGP)
impaired central nervous system regeneration  (IAGP)
increased cell proliferation  (IAGP)
increased exploration in new environment  (IAGP)
mandible hypoplasia  (IAGP)
micrognathia  (IAGP)
oral atresia  (IAGP)
palatal shelves fail to meet at midline  (IAGP)
persistent hyaloid artery  (IAGP)
premature death  (IAGP)
short mandible  (IAGP)
short premaxilla  (IAGP)
small mandible  (IAGP)
ureterocele  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Purification, identification and subcellular distribution of three predominant protein-tyrosine phosphatase enzymes in skeletal muscle tissue. Ahmad F and Goldstein BJ, Biochim Biophys Acta. 1995 Apr 5;1248(1):57-69.
2. Increased abundance of specific skeletal muscle protein-tyrosine phosphatases in a genetic model of insulin-resistant obesity and diabetes mellitus. Ahmad F and Goldstein BJ, Metabolism. 1995 Sep;44(9):1175-84.
3. Increased abundance of the receptor-type protein-tyrosine phosphatase LAR accounts for the elevated insulin receptor dephosphorylating activity in adipose tissue of obese human subjects. Ahmad F, etal., J Clin Invest. 1995 Jun;95(6):2806-12.
4. Alterations in skeletal muscle protein-tyrosine phosphatase activity and expression in insulin-resistant human obesity and diabetes. Ahmad F, etal., J Clin Invest. 1997 Jul 15;100(2):449-58.
5. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. The allelic variant of LAR gene promoter -127 bp T-->A is associated with reduced risk of obesity and other features related to insulin resistance. Miscio G, etal., J Mol Med. 2004 Jul;82(7):459-66. Epub 2004 May 19.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. A new member of the immunoglobulin superfamily that has a cytoplasmic region homologous to the leukocyte common antigen. Streuli M, etal., J Exp Med 1988 Nov 1;168(5):1523-30.
13. Regulation of insulin receptor function. Youngren JF Cell Mol Life Sci. 2007 Apr;64(7-8):873-91.
14. Overexpression of the LAR (leukocyte antigen-related) protein-tyrosine phosphatase in muscle causes insulin resistance. Zabolotny JM, etal., Proc Natl Acad Sci U S A. 2001 Apr 24;98(9):5187-92. Epub 2001 Apr 17.
Additional References at PubMed
PMID:1454056   PMID:1655529   PMID:7604039   PMID:7665159   PMID:7804149   PMID:7832766   PMID:8830779   PMID:8875997   PMID:8889548   PMID:9039657   PMID:9245518   PMID:9519761  
PMID:9748473   PMID:9784606   PMID:10349636   PMID:10777529   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11182246   PMID:11217851   PMID:11241288   PMID:11431694   PMID:11438588  
PMID:12466851   PMID:12477932   PMID:12496362   PMID:12515828   PMID:12520002   PMID:12653975   PMID:12904583   PMID:14610273   PMID:14967925   PMID:15033168   PMID:15302123   PMID:15489334  
PMID:15932596   PMID:16141072   PMID:16141073   PMID:16488625   PMID:16602821   PMID:17498650   PMID:17500057   PMID:17967808   PMID:18799693   PMID:18854310   PMID:19273906   PMID:19624305  
PMID:19727691   PMID:19910497   PMID:20186877   PMID:21300149   PMID:21402080   PMID:21677750   PMID:21873635   PMID:21976490   PMID:22899729   PMID:23791195   PMID:23863482   PMID:25220840  
PMID:25703008   PMID:25737280   PMID:25826454   PMID:26231120   PMID:26371508   PMID:26792178   PMID:27074791   PMID:27352860   PMID:28637841   PMID:29073098   PMID:31985401   PMID:32325033  
PMID:33656439   PMID:34169071   PMID:37591863   PMID:38139460  


Genomics

Comparative Map Data
Ptprf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394118,065,410 - 118,148,602 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4118,065,410 - 118,148,602 (-)EnsemblGRCm39 Ensembl
GRCm384118,208,213 - 118,291,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4118,208,213 - 118,291,405 (-)EnsemblGRCm38mm10GRCm38
MGSCv374117,880,818 - 117,964,002 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,707,733 - 117,775,378 (-)NCBIMGSCv36mm8
Celera4116,924,108 - 117,000,571 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map454.47NCBI
PTPRF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,522,051 - 43,623,666 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl143,525,187 - 43,623,666 (+)EnsemblGRCh38hg38GRCh38
GRCh37143,991,708 - 44,089,337 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36143,769,134 - 43,861,930 (+)NCBINCBI36Build 36hg18NCBI36
Build 34143,665,639 - 43,758,427NCBI
Celera142,278,501 - 42,371,223 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef142,115,737 - 42,210,000 (+)NCBIHuRef
CHM1_1144,112,964 - 44,205,662 (+)NCBICHM1_1
T2T-CHM13v2.0143,392,482 - 43,494,171 (+)NCBIT2T-CHM13v2.0
Ptprf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85137,027,376 - 137,109,405 (-)NCBIGRCr8
mRatBN7.25131,741,959 - 131,824,000 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5131,742,754 - 131,810,023 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5134,450,662 - 134,517,838 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05136,205,300 - 136,272,476 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05136,227,709 - 136,294,886 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05137,036,936 - 137,112,930 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,036,935 - 137,112,927 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05140,825,315 - 140,901,672 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,671,725 - 138,739,002 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15138,676,940 - 138,744,228 (-)NCBI
Celera5130,289,962 - 130,357,275 (-)NCBICelera
Cytogenetic Map5q36NCBI
Ptprf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,096,603 - 3,185,682 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,096,601 - 3,185,682 (+)NCBIChiLan1.0ChiLan1.0
PTPRF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21183,187,925 - 183,286,181 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11182,329,316 - 182,427,574 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,878,344 - 42,923,539 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1144,202,298 - 44,299,309 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,220,991 - 44,297,647 (+)Ensemblpanpan1.1panPan2
PTPRF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,590,908 - 16,666,673 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,591,308 - 16,666,673 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,715,596 - 16,802,435 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01516,749,545 - 16,780,639 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1516,750,317 - 16,773,577 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11516,547,414 - 16,635,530 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01516,616,690 - 16,703,670 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01516,689,993 - 16,777,132 (-)NCBIUU_Cfam_GSD_1.0
Ptprf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,083,308 - 59,159,896 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647424,908,120 - 24,983,330 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647424,908,103 - 24,984,678 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,657,680 - 167,743,721 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,656,674 - 167,743,750 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26155,043,861 - 155,112,457 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12089,192,426 - 89,284,989 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2089,191,660 - 89,284,970 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603327,638,913 - 27,731,698 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptprf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248922,825,771 - 2,932,854 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ptprf
3055 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1849
Count of miRNA genes:579
Interacting mature miRNAs:720
Transcripts:ENSMUST00000049074, ENSMUST00000123484, ENSMUST00000124758, ENSMUST00000127616, ENSMUST00000143348, ENSMUST00000150096
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904006Cfq1_mconditioned fear QTL 1 (mouse)4117177646120107755Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
4141330Iva1_misovaleric acid smelling 1 (mouse)Not determined117071971120723203Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4110857197125893793Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115030777129465915Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101574601123127211Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse
1301996Mmtg2_mmodifier of mammary tumor growth 2 (mouse)Not determined4116270979124055180Mouse

Markers in Region
RH125034  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4C6-D1UniSTS
UniSTS:224908  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384118,209,396 - 118,209,570UniSTSGRCm38
MGSCv374117,882,001 - 117,882,175UniSTSGRCm37
Celera4116,925,291 - 116,925,465UniSTS
Cytogenetic Map4C6-D1UniSTS
fj50d02.y1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384118,211,809 - 118,212,131UniSTSGRCm38
MGSCv374117,884,414 - 117,884,736UniSTSGRCm37
Celera4116,927,704 - 116,928,026UniSTS
Cytogenetic Map4C6-D1UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF300943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI385919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL626764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL807774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU055092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU056582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA315396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD352108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK634962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV556730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX201972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z37988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000049074   ⟹   ENSMUSP00000039368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,065,410 - 118,148,602 (-)Ensembl
GRCm38.p6 Ensembl4118,208,213 - 118,291,405 (-)Ensembl
Ensembl Acc Id: ENSMUST00000123484
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,066,186 - 118,074,877 (-)Ensembl
GRCm38.p6 Ensembl4118,208,989 - 118,217,680 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124758   ⟹   ENSMUSP00000119954
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,066,207 - 118,093,213 (-)Ensembl
GRCm38.p6 Ensembl4118,209,010 - 118,236,016 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127616
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,067,057 - 118,067,938 (-)Ensembl
GRCm38.p6 Ensembl4118,209,860 - 118,210,741 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,083,355 - 118,088,297 (-)Ensembl
GRCm38.p6 Ensembl4118,226,158 - 118,231,100 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150096   ⟹   ENSMUSP00000117313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,066,202 - 118,093,642 (-)Ensembl
GRCm38.p6 Ensembl4118,209,005 - 118,236,445 (-)Ensembl
Ensembl Acc Id: ENSMUST00000222620   ⟹   ENSMUSP00000152568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,093,570 - 118,148,471 (-)Ensembl
GRCm38.p6 Ensembl4118,236,373 - 118,291,274 (-)Ensembl
RefSeq Acc Id: NM_011213   ⟹   NP_035343
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,594 (-)NCBI
GRCm384118,208,213 - 118,291,397 (-)NCBI
MGSCv374117,880,818 - 117,964,002 (-)RGD
Celera4116,924,108 - 117,000,571 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006502864   ⟹   XP_006502927
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
GRCm384118,208,213 - 118,291,268 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502865   ⟹   XP_006502928
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
GRCm384118,208,213 - 118,291,405 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502866   ⟹   XP_006502929
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
GRCm384118,208,213 - 118,291,268 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502867   ⟹   XP_006502930
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
GRCm384118,208,213 - 118,291,268 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502868   ⟹   XP_006502931
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
GRCm384118,208,213 - 118,291,405 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502869   ⟹   XP_006502932
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
GRCm384118,208,213 - 118,291,405 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502870   ⟹   XP_006502933
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
GRCm384118,208,213 - 118,291,268 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502871   ⟹   XP_006502934
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
GRCm384118,208,213 - 118,291,268 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502872   ⟹   XP_006502935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
GRCm384118,208,213 - 118,291,405 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502874   ⟹   XP_006502937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
GRCm384118,208,213 - 118,291,268 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502875   ⟹   XP_006502938
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
GRCm384118,208,213 - 118,291,268 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502876   ⟹   XP_006502939
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
GRCm384118,208,213 - 118,291,268 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253360   ⟹   XP_030109220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
GRCm384118,208,213 - 118,291,405 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253361   ⟹   XP_030109221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
GRCm384118,208,213 - 118,291,393 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253362   ⟹   XP_030109222
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
GRCm384118,208,213 - 118,291,405 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253363   ⟹   XP_030109223
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
GRCm384118,208,213 - 118,291,405 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163879   ⟹   XP_036019772
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163880   ⟹   XP_036019773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163881   ⟹   XP_036019774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163882   ⟹   XP_036019775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163883   ⟹   XP_036019776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,105,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163884   ⟹   XP_036019777
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163885   ⟹   XP_036019778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163886   ⟹   XP_036019779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163887   ⟹   XP_036019780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163888   ⟹   XP_036019781
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163889   ⟹   XP_036019782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163890   ⟹   XP_036019783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,105,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163891   ⟹   XP_036019784
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163892   ⟹   XP_036019785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,148,602 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163893   ⟹   XP_036019786
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,104,249 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163894   ⟹   XP_036019787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,104,248 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163895   ⟹   XP_036019788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,105,680 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163896   ⟹   XP_036019789
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,065,410 - 118,105,680 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_035343 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502927 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502928 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502929 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502930 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502931 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502932 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502933 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502934 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502935 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502937 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502938 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502939 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109220 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109221 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109222 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109223 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019772 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019773 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019774 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019775 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019776 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019777 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019778 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019779 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019780 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019781 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019782 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019783 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019784 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019785 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019786 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019787 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019788 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019789 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A2A8L5 (Get FASTA)   NCBI Sequence Viewer  
  AAG40194 (Get FASTA)   NCBI Sequence Viewer  
  AAH57166 (Get FASTA)   NCBI Sequence Viewer  
  BAE21505 (Get FASTA)   NCBI Sequence Viewer  
  BAE36501 (Get FASTA)   NCBI Sequence Viewer  
  CAA80584 (Get FASTA)   NCBI Sequence Viewer  
  CAA80596 (Get FASTA)   NCBI Sequence Viewer  
  CAA86070 (Get FASTA)   NCBI Sequence Viewer  
  EDL30516 (Get FASTA)   NCBI Sequence Viewer  
  EDL30517 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000039368
  ENSMUSP00000039368.7
  ENSMUSP00000117313
  ENSMUSP00000117313.2
  ENSMUSP00000119954
  ENSMUSP00000119954.2
  ENSMUSP00000152568.2
RefSeq Acc Id: NP_035343   ⟸   NM_011213
- Peptide Label: precursor
- UniProtKB: Q6PG86 (UniProtKB/Swiss-Prot),   Q9EQ17 (UniProtKB/Swiss-Prot),   A2A8L5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006502935   ⟸   XM_006502872
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_006502931   ⟸   XM_006502868
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006502932   ⟸   XM_006502869
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006502928   ⟸   XM_006502865
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006502939   ⟸   XM_006502876
- Peptide Label: isoform X26
- Sequence:
RefSeq Acc Id: XP_006502934   ⟸   XM_006502871
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006502938   ⟸   XM_006502875
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_006502933   ⟸   XM_006502870
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006502929   ⟸   XM_006502866
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006502937   ⟸   XM_006502874
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_006502930   ⟸   XM_006502867
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006502927   ⟸   XM_006502864
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030109223   ⟸   XM_030253363
- Peptide Label: isoform X30
RefSeq Acc Id: XP_030109220   ⟸   XM_030253360
- Peptide Label: isoform X12
RefSeq Acc Id: XP_030109222   ⟸   XM_030253362
- Peptide Label: isoform X27
RefSeq Acc Id: XP_030109221   ⟸   XM_030253361
- Peptide Label: isoform X9
Ensembl Acc Id: ENSMUSP00000117313   ⟸   ENSMUST00000150096
Ensembl Acc Id: ENSMUSP00000152568   ⟸   ENSMUST00000222620
Ensembl Acc Id: ENSMUSP00000119954   ⟸   ENSMUST00000124758
Ensembl Acc Id: ENSMUSP00000039368   ⟸   ENSMUST00000049074
RefSeq Acc Id: XP_036019785   ⟸   XM_036163892
- Peptide Label: isoform X29
RefSeq Acc Id: XP_036019774   ⟸   XM_036163881
- Peptide Label: isoform X13
RefSeq Acc Id: XP_036019782   ⟸   XM_036163889
- Peptide Label: isoform X24
RefSeq Acc Id: XP_036019779   ⟸   XM_036163886
- Peptide Label: isoform X21
RefSeq Acc Id: XP_036019780   ⟸   XM_036163887
- Peptide Label: isoform X22
RefSeq Acc Id: XP_036019777   ⟸   XM_036163884
- Peptide Label: isoform X18
RefSeq Acc Id: XP_036019775   ⟸   XM_036163882
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036019772   ⟸   XM_036163879
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036019784   ⟸   XM_036163891
- Peptide Label: isoform X28
RefSeq Acc Id: XP_036019773   ⟸   XM_036163880
- Peptide Label: isoform X11
RefSeq Acc Id: XP_036019781   ⟸   XM_036163888
- Peptide Label: isoform X23
RefSeq Acc Id: XP_036019778   ⟸   XM_036163885
- Peptide Label: isoform X20
RefSeq Acc Id: XP_036019783   ⟸   XM_036163890
- Peptide Label: isoform X25
RefSeq Acc Id: XP_036019776   ⟸   XM_036163883
- Peptide Label: isoform X16
RefSeq Acc Id: XP_036019789   ⟸   XM_036163896
- Peptide Label: isoform X34
- UniProtKB: F6Y3V0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019788   ⟸   XM_036163895
- Peptide Label: isoform X33
- UniProtKB: F6Y3V0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019786   ⟸   XM_036163893
- Peptide Label: isoform X31
RefSeq Acc Id: XP_036019787   ⟸   XM_036163894
- Peptide Label: isoform X32
- UniProtKB: F6Y3V0 (UniProtKB/TrEMBL)
Protein Domains
Fibronectin type-III   Ig-like   Ig-like C2-type   Tyrosine specific protein phosphatases   Tyrosine-protein phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2A8L5-F1-model_v2 AlphaFold A2A8L5 1-1898 view protein structure

Promoters
RGD ID:6836019
Promoter ID:MM_KWN:39281
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000019814
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364117,882,956 - 117,884,302 (-)MPROMDB
RGD ID:6847846
Promoter ID:MM_ACW:35492
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   Spleen
Transcripts:PTPRF.LSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364117,884,371 - 117,884,967 (-)MPROMDB
RGD ID:6847844
Promoter ID:MM_ACW:35493
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:PTPRF.MSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364117,885,956 - 117,886,456 (-)MPROMDB
RGD ID:6836015
Promoter ID:MM_KWN:39282
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000019812
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364117,889,801 - 117,891,252 (-)MPROMDB
RGD ID:6847848
Promoter ID:MM_ACW:35495
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:PTPRF.GSEP07,   PTPRF.KSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364117,895,744 - 117,896,244 (-)MPROMDB
RGD ID:6847841
Promoter ID:MM_ACW:35496
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:PTPRF.HSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364117,898,789 - 117,899,289 (-)MPROMDB
RGD ID:6836017
Promoter ID:MM_KWN:39283
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung
Transcripts:OTTMUST00000019813
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364117,903,231 - 117,904,307 (-)MPROMDB
RGD ID:6836016
Promoter ID:MM_KWN:39284
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung
Transcripts:OTTMUST00000019810,   OTTMUST00000019811
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364117,908,781 - 117,909,882 (-)MPROMDB
RGD ID:6884400
Promoter ID:EPDNEW_M5651
Type:initiation region
Name:Ptprf_1
Description:Mus musculus protein tyrosine phosphatase, receptor type, F ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384118,291,369 - 118,291,429EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102695 AgrOrtholog
Ensembl Genes ENSMUSG00000033295 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049074 ENTREZGENE
  ENSMUST00000049074.13 UniProtKB/Swiss-Prot
  ENSMUST00000124758 ENTREZGENE
  ENSMUST00000124758.2 UniProtKB/TrEMBL
  ENSMUST00000150096 ENTREZGENE
  ENSMUST00000150096.8 UniProtKB/TrEMBL
  ENSMUST00000222620.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein-Tyr_Phosphatase UniProtKB/TrEMBL
  PTPase_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RTP_Phos/Ushers UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19268 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:102695 ENTREZGENE
NCBI Gene 19268 ENTREZGENE
PANTHER CYTOKINE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MYOPALLADIN UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
  PROTEIN-TYROSINE-PHOSPHATASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN-TYROSINE-PHOSPHATASE UniProtKB/TrEMBL
  RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE UniProtKB/TrEMBL
  RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE F UniProtKB/TrEMBL
  TYROSINE-PROTEIN PHOSPHATASE LAR UniProtKB/TrEMBL
Pfam fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptprf PhenoGen
PRINTS FNTYPEIII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRTYPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y7VNR5_MOUSE UniProtKB/TrEMBL
  A2A8L5 ENTREZGENE
  F6S1X8_MOUSE UniProtKB/TrEMBL
  F6Y3V0 ENTREZGENE, UniProtKB/TrEMBL
  PTPRF_MOUSE UniProtKB/Swiss-Prot
  Q3TT24_MOUSE UniProtKB/TrEMBL
  Q3V0J9_MOUSE UniProtKB/TrEMBL
  Q4JFB8_MOUSE UniProtKB/TrEMBL
  Q4U1Z0_MOUSE UniProtKB/TrEMBL
  Q64696_MOUSE UniProtKB/TrEMBL
  Q6PG86 ENTREZGENE
  Q9EQ17 ENTREZGENE
UniProt Secondary Q6PG86 UniProtKB/Swiss-Prot
  Q9EQ17 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-16 Ptprf  protein tyrosine phosphatase receptor type F  Ptprf  protein tyrosine phosphatase, receptor type, F  Symbol and/or name change 5135510 APPROVED