Picalm (phosphatidylinositol binding clathrin assembly protein) - Rat Genome Database

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Gene: Picalm (phosphatidylinositol binding clathrin assembly protein) Mus musculus
Analyze
Symbol: Picalm
Name: phosphatidylinositol binding clathrin assembly protein
RGD ID: 737178
MGI Page MGI
Description: Predicted to enable several functions, including SH3 domain binding activity; clathrin heavy chain binding activity; and phosphatidylinositol binding activity. Involved in several processes, including amyloid-beta clearance by transcytosis; neuron projection morphogenesis; and positive regulation of amyloid-beta formation. Located in clathrin-coated pit and vesicle. Colocalizes with perinuclear region of cytoplasm. Is expressed in several structures, including aorta; brain; hemolymphoid system gland; liver; and lung. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human PICALM (phosphatidylinositol binding clathrin assembly protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CALM; clathrin assembly lymphoid myeloid leukemia; CLTH; fit; fit-; fit-1; fit1; KIAA4114; MGC19382; MGC36413; MGC36616; mKIAA4114; PAP180; phosphatidylinositol-binding clathrin assembly protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39789,778,711 - 89,858,655 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl789,779,421 - 89,862,673 (+)EnsemblGRCm39 Ensembl
GRCm38790,130,192 - 90,209,447 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl790,130,213 - 90,213,465 (+)EnsemblGRCm38mm10GRCm38
MGSCv37797,278,742 - 97,357,442 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36790,005,424 - 90,084,124 (+)NCBIMGSCv36mm8
Celera787,455,394 - 87,534,538 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map750.47NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
1-nitropyrene  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
acetylsalicylic acid  (ISO)
actinomycin D  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
benzo[a]pyrene  (EXP)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP,ISO)
casticin  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
clofibrate  (EXP)
clofibric acid  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
coumarin  (ISO)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
eugenol  (ISO)
folic acid  (EXP,ISO)
fulvestrant  (ISO)
gentamycin  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
inulin  (EXP)
isoprenaline  (EXP)
ivermectin  (ISO)
leflunomide  (EXP)
lipopolysaccharide  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
nickel sulfate  (ISO)
Nutlin-3  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
propiconazole  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
sunitinib  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
tetrahydropalmatine  (ISO)
theophylline  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
amyloid-beta clearance by transcytosis  (IGI,IMP,ISO)
axonogenesis  (IMP,ISO)
clathrin coat assembly  (IEA,ISO)
clathrin-dependent endocytosis  (IBA,IMP,ISO)
dendrite morphogenesis  (IMP,ISO)
endocytosis  (ISO)
endosomal transport  (IEA,ISO)
hemopoiesis  (IMP)
intracellular iron ion homeostasis  (IEA,ISO)
learning or memory  (IGI)
membrane bending  (ISO)
multicellular organismal-level iron ion homeostasis  (ISO,ISS)
negative regulation of gene expression  (ISO,ISS)
negative regulation of protein localization to cell surface  (IEA,ISO)
negative regulation of protein localization to plasma membrane  (IEA,ISO)
negative regulation of receptor-mediated endocytosis  (IEA,ISO)
positive regulation of amyloid precursor protein catabolic process  (IMP)
positive regulation of amyloid-beta formation  (IMP,ISO)
positive regulation of axonogenesis  (ISO)
positive regulation of dendrite extension  (ISO)
positive regulation of DNA-templated transcription  (ISO)
positive regulation of Ras protein signal transduction  (IEA,ISO)
positive regulation of synaptic vesicle clustering  (ISO)
positive regulation of synaptic vesicle endocytosis  (ISO)
receptor internalization  (IEA,ISO)
receptor-mediated endocytosis  (IDA,ISO)
regulation of amyloid precursor protein catabolic process  (ISO,ISS)
regulation of amyloid-beta formation  (IGI)
regulation of endocytosis  (ISO)
regulation of protein localization  (ISO)
regulation of protein transport  (ISO)
regulation of synaptic vesicle endocytosis  (ISO)
regulation of synaptic vesicle transport  (ISO)
regulation of terminal button organization  (ISO)
regulation of vesicle size  (IEA,ISO)
synaptic vesicle budding from presynaptic endocytic zone membrane  (IBA)
synaptic vesicle endocytosis  (ISO)
synaptic vesicle maturation  (IMP)
vesicle budding from membrane  (IEA,ISO)
vesicle cargo loading  (IMP,ISO)
vesicle-mediated transport  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal B cell differentiation  (IAGP)
abnormal bone marrow cell morphology/development  (IAGP)
abnormal cell physiology  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal erythrocyte morphology  (IAGP)
abnormal erythrocyte physiology  (IAGP)
abnormal erythropoiesis  (IAGP)
abnormal fetal liver hematopoietic progenitor cell morphology  (IAGP)
abnormal hepatocyte physiology  (IAGP)
abnormal iron homeostasis  (IAGP)
anemia  (IEA)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased CD4-positive, alpha-beta T cell number  (IAGP)
decreased CD8-positive, alpha-beta T cell number  (IAGP)
decreased embryo size  (IAGP)
decreased embryo weight  (IAGP)
decreased erythroblast number  (IAGP)
decreased erythrocyte cell number  (IAGP)
decreased erythroid progenitor cell number  (IAGP)
decreased hematocrit  (IAGP)
decreased hemoglobin content  (IAGP)
decreased mean corpuscular hemoglobin  (IAGP)
decreased mean corpuscular volume  (IAGP)
decreased spleen B cell follicle number  (IAGP)
diluted coat color  (IAGP)
enlarged spleen  (IAGP)
fetal growth retardation  (IAGP)
hemosiderosis  (IAGP)
hypochromic microcytic anemia  (IAGP)
impaired hematopoiesis  (IAGP)
increased circulating erythropoietin level  (IAGP)
increased circulating iron level  (IAGP)
increased erythroblast number  (IAGP)
increased erythrocyte cell number  (IAGP)
increased hematocrit  (IAGP)
increased hemoglobin content  (IAGP)
increased red blood cell distribution width  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
lethality, complete penetrance  (IAGP)
microcytic anemia  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
reticulocytosis  (IAGP)
thrombocytosis  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. A novel chromosomal inversion at 11q23 in infant acute myeloid leukemia fuses MLL to CALM, a gene that encodes a clathrin assembly protein. Wechsler DS, etal., Genes Chromosomes Cancer. 2003 Jan;36(1):26-36.
Additional References at PubMed
PMID:2300582   PMID:7558026   PMID:7767008   PMID:8889548   PMID:9292517   PMID:10224267   PMID:10349636   PMID:10403440   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851  
PMID:12477932   PMID:12520002   PMID:12832620   PMID:12904583   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17425782   PMID:18182011   PMID:18799693   PMID:18842885  
PMID:21151910   PMID:21267068   PMID:21379568   PMID:21677750   PMID:21706055   PMID:21873635   PMID:22363754   PMID:22539346   PMID:22558309   PMID:22794259   PMID:22851330   PMID:22952941  
PMID:24397609   PMID:24457600   PMID:24577224   PMID:25186232   PMID:25552701   PMID:25737280   PMID:26005850   PMID:26399746   PMID:27160897   PMID:27434733   PMID:27466196   PMID:28671696  
PMID:30196744   PMID:30995482   PMID:31925534   PMID:32325033   PMID:32554809   PMID:35449600   PMID:35613266   PMID:36707892   PMID:37143315   PMID:38237377   PMID:39182843  


Genomics

Comparative Map Data
Picalm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39789,778,711 - 89,858,655 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl789,779,421 - 89,862,673 (+)EnsemblGRCm39 Ensembl
GRCm38790,130,192 - 90,209,447 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl790,130,213 - 90,213,465 (+)EnsemblGRCm38mm10GRCm38
MGSCv37797,278,742 - 97,357,442 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36790,005,424 - 90,084,124 (+)NCBIMGSCv36mm8
Celera787,455,394 - 87,534,538 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map750.47NCBI
PICALM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381185,957,175 - 86,069,860 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1185,957,175 - 86,069,882 (-)EnsemblGRCh38hg38GRCh38
GRCh371185,668,218 - 85,780,902 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361185,346,133 - 85,457,756 (-)NCBINCBI36Build 36hg18NCBI36
Build 341185,346,133 - 85,457,756NCBI
Celera1182,977,768 - 83,089,435 (-)NCBICelera
Cytogenetic Map11q14.2NCBI
HuRef1181,965,384 - 82,078,030 (-)NCBIHuRef
CHM1_11185,553,010 - 85,665,742 (-)NCBICHM1_1
T2T-CHM13v2.01185,893,875 - 86,006,599 (-)NCBIT2T-CHM13v2.0
Picalm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81153,468,982 - 153,550,086 (+)NCBIGRCr8
mRatBN7.21144,056,415 - 144,138,045 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1144,056,721 - 144,137,557 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1151,982,728 - 152,062,265 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01159,159,274 - 159,238,823 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01152,033,188 - 152,112,743 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01154,377,229 - 154,458,966 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1154,377,247 - 154,458,425 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01160,681,689 - 160,763,382 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41146,754,085 - 146,834,197 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11146,832,490 - 146,912,603 (+)NCBI
Celera1142,288,691 - 142,367,949 (+)NCBICelera
Cytogenetic Map1q32NCBI
Picalm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554146,871,520 - 6,969,208 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554146,871,220 - 6,970,569 (+)NCBIChiLan1.0ChiLan1.0
PICALM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2986,878,789 - 86,989,754 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11187,929,638 - 88,040,190 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01181,011,324 - 81,122,352 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11184,619,241 - 84,730,516 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,619,241 - 84,730,684 (-)Ensemblpanpan1.1panPan2
PICALM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12113,437,819 - 13,540,167 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2113,437,925 - 13,539,616 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2113,303,451 - 13,405,757 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02113,619,410 - 13,719,561 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2113,619,520 - 13,719,419 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12113,405,869 - 13,508,626 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02113,478,428 - 13,581,047 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02113,531,568 - 13,633,911 (+)NCBIUU_Cfam_GSD_1.0
Picalm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494772,186,022 - 72,286,358 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649813,784,886 - 13,886,167 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649813,785,638 - 13,885,931 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PICALM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl919,835,938 - 20,123,566 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1919,835,934 - 19,947,239 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2922,107,100 - 22,184,702 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PICALM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1177,214,391 - 77,325,626 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl177,213,836 - 77,324,875 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604348,400,453 - 48,511,604 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Picalm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248453,891,061 - 3,990,342 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248453,875,601 - 3,990,347 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Picalm
2717 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:470
Count of miRNA genes:342
Interacting mature miRNAs:372
Transcripts:ENSMUST00000049537
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
13825246Albc2_malbino coat color QTL 2 (mouse)78764920895649207Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
27226792Feml7_mfemur length 7, 5 week (mouse)78614920898949207Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
4142212Png1_mPostnatal growth 1 (mouse)Not determined7432612192394346Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
4142319Powg_mpost-ovarectomy weight gain (mouse)Not determined7285710592582163Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse

Markers in Region
Picalm  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38790,208,589 - 90,208,738UniSTSGRCm38
MGSCv37797,357,099 - 97,357,248UniSTSGRCm37
Celera787,534,195 - 87,534,344UniSTS
Cytogenetic Map7E1UniSTS
cM Map747.2UniSTS
UniSTS:235707  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38790,209,046 - 90,209,245UniSTSGRCm38
MGSCv37797,357,556 - 97,357,755UniSTSGRCm37
Celera787,534,652 - 87,534,851UniSTS
Cytogenetic Map7E1UniSTS
cM Map747.2UniSTS
RH136706  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38790,149,996 - 90,150,210UniSTSGRCm38
MGSCv37797,298,506 - 97,298,720UniSTSGRCm37
Celera787,475,541 - 87,475,755UniSTS
Cytogenetic Map7E1UniSTS
cM Map747.2UniSTS
D7Mit32  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38790,160,112 - 90,160,242UniSTSGRCm38
MGSCv37797,308,622 - 97,308,752UniSTSGRCm37
Celera787,485,632 - 87,485,764UniSTS
Cytogenetic Map7E1UniSTS
cM Map746.4UniSTS
cM Map7 UniSTS
Whitehead Genetic733.9UniSTS
Whitehead_YAC7 UniSTS
RH66557  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38790,208,624 - 90,208,786UniSTSGRCm38
MGSCv37797,357,134 - 97,357,296UniSTSGRCm37
Celera787,534,230 - 87,534,392UniSTS
Cytogenetic Map7E1UniSTS
cM Map747.2UniSTS
SHGC-24065  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38790,208,784 - 90,208,910UniSTSGRCm38
MGSCv37797,357,294 - 97,357,420UniSTSGRCm37
Celera787,534,390 - 87,534,516UniSTS
Cytogenetic Map7E1UniSTS
cM Map747.2UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY206701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK001028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY160265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000049537   ⟹   ENSMUSP00000051092
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,779,724 - 89,858,308 (+)Ensembl
GRCm38.p6 Ensembl790,130,516 - 90,209,100 (+)Ensembl
Ensembl Acc Id: ENSMUST00000207084   ⟹   ENSMUSP00000146509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,814,721 - 89,858,138 (+)Ensembl
GRCm38.p6 Ensembl790,165,513 - 90,208,930 (+)Ensembl
Ensembl Acc Id: ENSMUST00000207106
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,842,307 - 89,844,179 (+)Ensembl
GRCm38.p6 Ensembl790,193,099 - 90,194,971 (+)Ensembl
Ensembl Acc Id: ENSMUST00000207197
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,779,703 - 89,813,254 (+)Ensembl
GRCm38.p6 Ensembl790,130,495 - 90,164,046 (+)Ensembl
Ensembl Acc Id: ENSMUST00000207225   ⟹   ENSMUSP00000146659
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,779,421 - 89,858,140 (+)Ensembl
GRCm38.p6 Ensembl790,130,213 - 90,208,932 (+)Ensembl
Ensembl Acc Id: ENSMUST00000207484   ⟹   ENSMUSP00000146501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,779,423 - 89,862,673 (+)Ensembl
GRCm38.p6 Ensembl790,130,215 - 90,213,465 (+)Ensembl
Ensembl Acc Id: ENSMUST00000207596
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,779,472 - 89,781,329 (+)Ensembl
GRCm38.p6 Ensembl790,130,264 - 90,132,121 (+)Ensembl
Ensembl Acc Id: ENSMUST00000207949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,779,500 - 89,818,459 (+)Ensembl
GRCm38.p6 Ensembl790,130,292 - 90,169,251 (+)Ensembl
Ensembl Acc Id: ENSMUST00000208089   ⟹   ENSMUSP00000150861
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,821,458 - 89,858,311 (+)Ensembl
GRCm38.p6 Ensembl790,172,250 - 90,209,103 (+)Ensembl
Ensembl Acc Id: ENSMUST00000208127
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,844,440 - 89,846,214 (+)Ensembl
GRCm38.p6 Ensembl790,195,232 - 90,197,006 (+)Ensembl
Ensembl Acc Id: ENSMUST00000208684   ⟹   ENSMUSP00000146408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,780,853 - 89,814,780 (+)Ensembl
GRCm38.p6 Ensembl790,131,645 - 90,165,572 (+)Ensembl
Ensembl Acc Id: ENSMUST00000208730   ⟹   ENSMUSP00000146541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,779,501 - 89,858,134 (+)Ensembl
GRCm38.p6 Ensembl790,130,293 - 90,208,926 (+)Ensembl
Ensembl Acc Id: ENSMUST00000208742   ⟹   ENSMUSP00000147016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,779,712 - 89,858,138 (+)Ensembl
GRCm38.p6 Ensembl790,130,504 - 90,208,930 (+)Ensembl
Ensembl Acc Id: ENSMUST00000208891
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,838,011 - 89,844,922 (+)Ensembl
GRCm38.p6 Ensembl790,188,803 - 90,195,714 (+)Ensembl
Ensembl Acc Id: ENSMUST00000209068   ⟹   ENSMUSP00000146386
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl789,779,438 - 89,858,140 (+)Ensembl
GRCm38.p6 Ensembl790,130,230 - 90,208,932 (+)Ensembl
RefSeq Acc Id: NM_001252520   ⟹   NP_001239449
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,858,655 (+)NCBI
GRCm38790,130,213 - 90,209,447 (+)NCBI
Celera787,455,394 - 87,535,053 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252521   ⟹   NP_001239450
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,858,655 (+)NCBI
GRCm38790,130,213 - 90,209,447 (+)NCBI
Celera787,455,394 - 87,535,053 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252522   ⟹   NP_001239451
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,858,655 (+)NCBI
GRCm38790,130,213 - 90,209,447 (+)NCBI
Celera787,455,394 - 87,535,053 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252523   ⟹   NP_001239452
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,858,655 (+)NCBI
GRCm38790,130,213 - 90,209,447 (+)NCBI
Celera787,455,394 - 87,535,053 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252524   ⟹   NP_001239453
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,858,655 (+)NCBI
GRCm38790,130,213 - 90,209,447 (+)NCBI
Celera787,455,394 - 87,535,053 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001360867   ⟹   NP_001347796
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,858,655 (+)NCBI
GRCm38790,130,213 - 90,209,447 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001420463   ⟹   NP_001407392
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,858,655 (+)NCBI
RefSeq Acc Id: NM_001420464   ⟹   NP_001407393
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,858,655 (+)NCBI
RefSeq Acc Id: NM_001420465   ⟹   NP_001407394
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,858,655 (+)NCBI
RefSeq Acc Id: NM_001420466   ⟹   NP_001407395
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,858,655 (+)NCBI
RefSeq Acc Id: NM_001420467   ⟹   NP_001407396
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,858,655 (+)NCBI
RefSeq Acc Id: NM_001420468   ⟹   NP_001407397
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,778,711 - 89,827,620 (+)NCBI
RefSeq Acc Id: NM_146194   ⟹   NP_666306
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,858,655 (+)NCBI
GRCm38790,130,213 - 90,209,447 (+)NCBI
MGSCv37797,278,742 - 97,357,442 (+)RGD
Celera787,455,394 - 87,535,053 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_185178
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,799,465 (+)NCBI
RefSeq Acc Id: NR_185179
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,469 - 89,799,465 (+)NCBI
RefSeq Acc Id: XM_006507594   ⟹   XP_006507657
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,418 - 89,858,142 (+)NCBI
GRCm38790,130,194 - 90,209,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507596   ⟹   XP_006507659
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,418 - 89,858,142 (+)NCBI
GRCm38790,130,192 - 90,209,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507598   ⟹   XP_006507661
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,418 - 89,858,142 (+)NCBI
GRCm38790,130,196 - 90,209,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507599   ⟹   XP_006507662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,418 - 89,858,142 (+)NCBI
GRCm38790,130,193 - 90,209,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507600   ⟹   XP_006507663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,418 - 89,858,142 (+)NCBI
GRCm38790,130,194 - 90,209,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507602   ⟹   XP_006507665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,418 - 89,858,142 (+)NCBI
GRCm38790,130,193 - 90,209,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507603   ⟹   XP_006507666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,418 - 89,858,142 (+)NCBI
GRCm38790,130,195 - 90,209,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507604   ⟹   XP_006507667
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,418 - 89,858,142 (+)NCBI
GRCm38790,130,194 - 90,209,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507605   ⟹   XP_006507668
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39789,779,418 - 89,858,142 (+)NCBI
GRCm38790,130,195 - 90,209,443 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001239449 (Get FASTA)   NCBI Sequence Viewer  
  NP_001239450 (Get FASTA)   NCBI Sequence Viewer  
  NP_001239451 (Get FASTA)   NCBI Sequence Viewer  
  NP_001239452 (Get FASTA)   NCBI Sequence Viewer  
  NP_001239453 (Get FASTA)   NCBI Sequence Viewer  
  NP_001347796 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407392 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407393 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407394 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407395 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407396 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407397 (Get FASTA)   NCBI Sequence Viewer  
  NP_666306 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507657 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507659 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507661 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507662 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507663 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507665 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507666 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507667 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507668 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH11470 (Get FASTA)   NCBI Sequence Viewer  
  AAH21491 (Get FASTA)   NCBI Sequence Viewer  
  AAH23843 (Get FASTA)   NCBI Sequence Viewer  
  AAH27116 (Get FASTA)   NCBI Sequence Viewer  
  AAH57683 (Get FASTA)   NCBI Sequence Viewer  
  AAO17153 (Get FASTA)   NCBI Sequence Viewer  
  BAC39454 (Get FASTA)   NCBI Sequence Viewer  
  BAD90216 (Get FASTA)   NCBI Sequence Viewer  
  BAE36872 (Get FASTA)   NCBI Sequence Viewer  
  BAE41753 (Get FASTA)   NCBI Sequence Viewer  
  DAA01470 (Get FASTA)   NCBI Sequence Viewer  
  EDL06755 (Get FASTA)   NCBI Sequence Viewer  
  EDL06756 (Get FASTA)   NCBI Sequence Viewer  
  EDL06757 (Get FASTA)   NCBI Sequence Viewer  
  EDL06758 (Get FASTA)   NCBI Sequence Viewer  
  EDL06759 (Get FASTA)   NCBI Sequence Viewer  
  EDL06760 (Get FASTA)   NCBI Sequence Viewer  
  EDL06761 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000051092
  ENSMUSP00000051092.9
  ENSMUSP00000146386
  ENSMUSP00000146386.2
  ENSMUSP00000146408.2
  ENSMUSP00000146501
  ENSMUSP00000146501.2
  ENSMUSP00000146509
  ENSMUSP00000146509.2
  ENSMUSP00000146541
  ENSMUSP00000146541.2
  ENSMUSP00000146659
  ENSMUSP00000146659.2
  ENSMUSP00000147016
  ENSMUSP00000147016.2
  ENSMUSP00000150861.2
GenBank Protein Q7M6Y3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_666306   ⟸   NM_146194
- Peptide Label: isoform 1
- UniProtKB: Q8VDN5 (UniProtKB/Swiss-Prot),   Q8R3E1 (UniProtKB/Swiss-Prot),   Q8R0A9 (UniProtKB/Swiss-Prot),   Q8CIH8 (UniProtKB/Swiss-Prot),   Q8BUF6 (UniProtKB/Swiss-Prot),   Q811P1 (UniProtKB/Swiss-Prot),   Q3TS04 (UniProtKB/Swiss-Prot),   Q921L0 (UniProtKB/Swiss-Prot),   Q7M6Y3 (UniProtKB/Swiss-Prot),   Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239450   ⟸   NM_001252521
- Peptide Label: isoform 3
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239449   ⟸   NM_001252520
- Peptide Label: isoform 2
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239451   ⟸   NM_001252522
- Peptide Label: isoform 4
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239452   ⟸   NM_001252523
- Peptide Label: isoform 5
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239453   ⟸   NM_001252524
- Peptide Label: isoform 6
- UniProtKB: Q3TD51 (UniProtKB/TrEMBL),   Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507657   ⟸   XM_006507594
- Peptide Label: isoform X1
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507661   ⟸   XM_006507598
- Peptide Label: isoform X5
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507659   ⟸   XM_006507596
- Peptide Label: isoform X3
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507662   ⟸   XM_006507599
- Peptide Label: isoform X6
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507663   ⟸   XM_006507600
- Peptide Label: isoform X7
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507665   ⟸   XM_006507602
- Peptide Label: isoform X10
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507667   ⟸   XM_006507604
- Peptide Label: isoform X12
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507666   ⟸   XM_006507603
- Peptide Label: isoform X11
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507668   ⟸   XM_006507605
- Peptide Label: isoform X13
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001347796   ⟸   NM_001360867
- Peptide Label: isoform 7
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000051092   ⟸   ENSMUST00000049537
Ensembl Acc Id: ENSMUSP00000147016   ⟸   ENSMUST00000208742
Ensembl Acc Id: ENSMUSP00000146541   ⟸   ENSMUST00000208730
Ensembl Acc Id: ENSMUSP00000146408   ⟸   ENSMUST00000208684
Ensembl Acc Id: ENSMUSP00000150861   ⟸   ENSMUST00000208089
Ensembl Acc Id: ENSMUSP00000146659   ⟸   ENSMUST00000207225
Ensembl Acc Id: ENSMUSP00000146501   ⟸   ENSMUST00000207484
Ensembl Acc Id: ENSMUSP00000146509   ⟸   ENSMUST00000207084
Ensembl Acc Id: ENSMUSP00000146386   ⟸   ENSMUST00000209068
RefSeq Acc Id: NP_001407397   ⟸   NM_001420468
- Peptide Label: isoform 13
RefSeq Acc Id: NP_001407393   ⟸   NM_001420464
- Peptide Label: isoform 9
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407392   ⟸   NM_001420463
- Peptide Label: isoform 8
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407394   ⟸   NM_001420465
- Peptide Label: isoform 10
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407395   ⟸   NM_001420466
- Peptide Label: isoform 11
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407396   ⟸   NM_001420467
- Peptide Label: isoform 12
- UniProtKB: Q570Z8 (UniProtKB/TrEMBL)
Protein Domains
AP180 N-terminal homology (ANTH)   ENTH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7M6Y3-F1-model_v2 AlphaFold Q7M6Y3 1-660 view protein structure

Promoters
RGD ID:8664739
Promoter ID:EPDNEW_M10400
Type:initiation region
Name:Picalm_1
Description:Mus musculus phosphatidylinositol binding clathrin assembly protein, transcript variant 7, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38790,130,261 - 90,130,321EPDNEW
RGD ID:6841593
Promoter ID:MM_KWN:51506
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:BC048663_2310010J17RIK,   LINCRNA_938,   NM_146194,   UC009IGO.1,   UC009IGP.1,   UC009IGR.1,   UC009IGS.1,   UC009IGT.1,   UC009IGU.1,   UC009IGV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36797,277,396 - 97,279,302 (+)MPROMDB
RGD ID:6841745
Promoter ID:MM_KWN:51507
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:UC009IGW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36797,313,396 - 97,313,896 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385902 AgrOrtholog
Ensembl Genes ENSMUSG00000039361 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049537 ENTREZGENE
  ENSMUST00000049537.9 UniProtKB/Swiss-Prot
  ENSMUST00000207084 ENTREZGENE
  ENSMUST00000207084.2 UniProtKB/TrEMBL
  ENSMUST00000207225 ENTREZGENE
  ENSMUST00000207225.2 UniProtKB/Swiss-Prot
  ENSMUST00000207484 ENTREZGENE
  ENSMUST00000207484.2 UniProtKB/Swiss-Prot
  ENSMUST00000208089.3 UniProtKB/TrEMBL
  ENSMUST00000208684.2 UniProtKB/TrEMBL
  ENSMUST00000208730 ENTREZGENE
  ENSMUST00000208730.2 UniProtKB/Swiss-Prot
  ENSMUST00000208742 ENTREZGENE
  ENSMUST00000208742.2 UniProtKB/Swiss-Prot
  ENSMUST00000209068 ENTREZGENE
  ENSMUST00000209068.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.58.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ANTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AP180-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin_AP_dom2 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  ENTH UniProtKB/TrEMBL
  ENTH_VHS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Epsin-like_N UniProtKB/Swiss-Prot
KEGG Report mmu:233489 UniProtKB/Swiss-Prot
MGD MGI:2385902 ENTREZGENE
NCBI Gene 233489 ENTREZGENE
PANTHER PTHR22951 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22951:SF16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ANTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Picalm PhenoGen
PROSITE ENTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ENTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP ENTH_VHS UniProtKB/Swiss-Prot
  GAT-like domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48464 UniProtKB/TrEMBL
UniProt A0A140LHG9_MOUSE UniProtKB/TrEMBL
  A0A140LHQ8_MOUSE UniProtKB/TrEMBL
  A0A1L1SUR7_MOUSE UniProtKB/TrEMBL
  PICAL_MOUSE UniProtKB/Swiss-Prot
  Q3TD51 ENTREZGENE, UniProtKB/TrEMBL
  Q3TS04 ENTREZGENE
  Q570Z8 ENTREZGENE, UniProtKB/TrEMBL
  Q7M6Y3 ENTREZGENE
  Q811P1 ENTREZGENE
  Q8BUF6 ENTREZGENE
  Q8CIH8 ENTREZGENE
  Q8R0A9 ENTREZGENE
  Q8R3E1 ENTREZGENE
  Q8VDN5 ENTREZGENE
  Q921L0 ENTREZGENE
UniProt Secondary Q3TS04 UniProtKB/Swiss-Prot
  Q811P1 UniProtKB/Swiss-Prot
  Q8BUF6 UniProtKB/Swiss-Prot
  Q8CIH8 UniProtKB/Swiss-Prot
  Q8R0A9 UniProtKB/Swiss-Prot
  Q8R3E1 UniProtKB/Swiss-Prot
  Q8VDN5 UniProtKB/Swiss-Prot
  Q921L0 UniProtKB/Swiss-Prot