Kitl (kit ligand) - Rat Genome Database

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Gene: Kitl (kit ligand) Mus musculus
Symbol: Kitl
Name: kit ligand
RGD ID: 737119
Description: Enables cytokine activity and stem cell factor receptor binding activity. Acts upstream of or within several processes, including positive regulation of cell differentiation; positive regulation of cell population proliferation; and positive regulation of protein phosphorylation. Located in extracellular space and plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and sensory organ. Human ortholog(s) of this gene implicated in Waardenburg's syndrome; autosomal dominant nonsyndromic deafness 69; and familial progressive hyperpigmentation with or without hypopigmentation. Orthologous to human KITLG (KIT ligand).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bl; blz; C-kit ligand; Clo; cloud gray; Con; contrasted; Gb; grizzle-belly; hematopoietic growth factor KL; Kit; Kitlg; mast cell growth factor; Mgf; S; SC; SCF; SF; Sl; SLF; Ste; Steel; Steel factor; stem cell factor
RGD Orthologs
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm391099,851,477 - 99,936,278 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1099,851,492 - 99,936,278 (+)EnsemblGRCm39 Ensembl
GRCm3810100,015,615 - 100,100,416 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10100,015,630 - 100,100,416 (+)EnsemblGRCm38mm10GRCm38
MGSCv371099,478,458 - 99,563,046 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361099,445,512 - 99,530,100 (+)NCBIMGSCv36mm8
Celera10101,983,926 - 102,068,221 (+)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1051.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-artemisinic acid  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP,ISO)
1,4-benzoquinone  (ISO)
1-chloro-2,4-dinitrobenzene  (EXP)
1-octadec-9-enoylglycero-3-phosphate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-diaminotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
allethrin  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
ammonium hexachloroplatinate  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
benzophenanthridine  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butanal  (ISO)
butyric acid  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP,ISO)
ceric oxide  (ISO)
chloroprene  (ISO)
cholesterol  (ISO)
choline  (EXP)
chrysene  (EXP)
cisplatin  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (ISO)
cyclophosphamide  (EXP)
cyhalothrin  (ISO)
cypermethrin  (ISO)
daidzein  (ISO)
daidzein 7-O-beta-D-glucoside  (ISO)
daunorubicin  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
erlotinib hydrochloride  (ISO)
ethanol  (EXP)
fenvalerate  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
fumonisin B1  (ISO)
furan  (ISO)
gadodiamide hydrate  (ISO)
gemcitabine  (ISO)
genistein  (ISO)
genistein 7-O-beta-D-glucoside  (ISO)
gentamycin  (ISO)
glycitein  (ISO)
glycitin  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
hexamethylene diisocyanate  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
Indeno[1,2,3-cd]pyrene  (EXP)
indometacin  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lipopolysaccharide  (EXP,ISO)
LY294002  (ISO)
melphalan  (ISO)
mercury dibromide  (ISO)
methotrexate  (ISO)
methylisothiazolinone  (ISO)
microcystin-LR  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-methyl-N-nitrosourea  (EXP)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
nitrofen  (ISO)
Nutlin-3  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
oxymetholone  (ISO)
ozone  (EXP)
p-menthan-3-ol  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (ISO)
phencyclidine  (EXP)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
pravastatin  (EXP,ISO)
quercetin  (EXP,ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 203580  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
silver(1+) nitrate  (ISO)
sirolimus  (EXP)
sodium arsenite  (EXP)
sodium dichromate  (ISO)
sunitinib  (ISO)
T-2 toxin  (EXP)
tetrachloromethane  (EXP)
tetraphene  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
toluene 2,4-diisocyanate  (EXP)
topotecan  (ISO)
torcetrapib  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP,ISO)
trovafloxacin  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
wortmannin  (EXP,ISO)
zaragozic acid A  (EXP,ISO)
zearalenone  (ISO)
zinc atom  (ISO)
zinc protoporphyrin  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic process  (IGI)
cell adhesion  (IEA)
cell population proliferation  (IDA,IGI)
ectopic germ cell programmed cell death  (IMP)
embryonic hemopoiesis  (ISO)
extrinsic apoptotic signaling pathway in absence of ligand  (IDA)
germ cell development  (TAS)
hematopoietic progenitor cell differentiation  (IGI)
male gonad development  (ISO)
mast cell apoptotic process  (IDA)
mast cell migration  (IDA)
mast cell proliferation  (IDA,IGI)
melanocyte migration  (IDA)
myeloid leukocyte differentiation  (IGI)
negative regulation of apoptotic process  (IGI)
negative regulation of mast cell apoptotic process  (IDA)
neural crest cell migration  (IDA)
ovarian follicle development  (ISO)
peptidyl-tyrosine phosphorylation  (IDA)
positive regulation of cell population proliferation  (IBA,IDA,IGI,ISO)
positive regulation of hematopoietic progenitor cell differentiation  (IGI)
positive regulation of hematopoietic stem cell proliferation  (IDA)
positive regulation of leukocyte migration  (IDA)
positive regulation of MAP kinase activity  (IGI)
positive regulation of mast cell proliferation  (IDA,IGI)
positive regulation of melanocyte differentiation  (IDA)
positive regulation of myeloid leukocyte differentiation  (IGI)
positive regulation of peptidyl-tyrosine phosphorylation  (IDA)
positive regulation of Ras protein signal transduction  (IDA)
positive regulation of T cell proliferation  (IDA)
Ras protein signal transduction  (IDA)
response to organic cyclic compound  (ISO)
T cell proliferation  (IDA)

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood circulation  (IEA)
abnormal blood homeostasis  (IAGP)
abnormal bone marrow cell physiology  (IAGP)
abnormal brain development  (IEA)
abnormal coat/hair pigmentation  (IAGP)
abnormal common myeloid progenitor cell morphology  (IAGP)
abnormal erythropoiesis  (IAGP)
abnormal foot pigmentation  (IEA)
abnormal forestomach morphology  (IAGP)
abnormal hind foot hair pigmentation  (IEA)
abnormal melanoblast morphology  (IAGP)
abnormal osteoblast physiology  (IAGP)
abnormal osteoclast morphology  (IAGP)
abnormal ovarian folliculogenesis  (IAGP)
abnormal primordial germ cell migration  (IAGP)
abnormal primordial germ cell morphology  (IAGP)
abnormal primordial germ cell proliferation  (IAGP)
abnormal response to transplant  (IAGP)
abnormal retina pigmentation  (IEA)
abnormal seminiferous tubule morphology  (IEA)
abnormal skeleton development  (IAGP)
abnormal skin pigmentation  (IAGP)
abnormal spermatogenesis  (IAGP)
abnormal stomach epithelium morphology  (IAGP)
abnormal stomach non-glandular epithelium morphology  (IAGP)
abnormal tail hair pigmentation  (IEA)
abnormal tumor incidence  (IAGP)
abnormal ventral coat pigmentation  (IAGP)
abnormal vibrissa morphology  (IEA)
absent coat pigmentation  (IAGP)
absent germ cells  (IEA)
absent ovarian follicles  (IEA)
absent primordial germ cells  (IAGP)
absent skin pigmentation  (IEA)
anemia  (IAGP)
azoospermia  (IAGP)
belly spot  (IAGP)
decreased body size  (IEA)
decreased body weight  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased bone mineral content  (IAGP)
decreased bone mineral density  (IAGP)
decreased cell proliferation  (IAGP)
decreased compact bone thickness  (IAGP)
decreased double-negative T cell number  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased ear pigmentation  (IEA)
decreased erythrocyte cell number  (IAGP)
decreased fetal size  (IAGP)
decreased foot pigmentation  (IEA)
decreased hematocrit  (IAGP)
decreased hematopoietic cell number  (IAGP)
decreased hemoglobin content  (IAGP)
decreased litter size  (IEA)
decreased male germ cell number  (IAGP)
decreased mast cell number  (IAGP)
decreased mean corpuscular hemoglobin concentration  (IAGP)
decreased oocyte number  (IAGP)
decreased primordial germ cell number  (IAGP)
decreased primordial germ cell proliferation  (IAGP)
decreased survivor rate  (IAGP)
decreased T cell number  (IAGP)
decreased tail pigmentation  (IEA)
decreased testis weight  (IAGP)
decreased thymocyte number  (IAGP)
decreased trabecular bone volume  (IAGP)
decreased tumor incidence  (IAGP)
dermatitis  (IAGP)
diluted coat color  (IAGP)
early reproductive senescence  (IAGP)
embryonic lethality  (IEA)
embryonic lethality between implantation and somite formation  (IEA)
embryonic lethality, complete penetrance  (IEA)
enlarged spleen  (IAGP)
extramedullary hematopoiesis  (IAGP)
female infertility  (IAGP)
gastric ulcer  (IAGP)
gastrointestinal hemorrhage  (IAGP)
head blaze  (IEA)
head spot  (IAGP)
hyperpigmentation  (IAGP)
hypopigmentation  (IAGP)
impaired ovarian folliculogenesis  (IAGP)
increased adenoma incidence  (IAGP)
increased ear pigmentation  (IAGP)
increased erythrocyte protoporphyrin level  (IAGP)
increased leukemia incidence  (IAGP)
increased Leydig cell number  (IAGP)
increased mast cell number  (IAGP)
increased mean corpuscular hemoglobin  (IAGP)
increased mean corpuscular hemoglobin concentration  (IAGP)
increased mean corpuscular volume  (IAGP)
increased melanoma incidence  (IAGP)
increased mortality induced by ionizing radiation  (IAGP)
increased papilloma incidence  (IAGP)
increased primordial germ cell apoptosis  (IAGP)
increased testicular teratoma incidence  (IEA)
increased tumor incidence  (IEA)
infertility  (IAGP)
irregular coat pigmentation  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
liver hypoplasia  (IAGP)
low mean erythrocyte cell number  (IAGP)
macrocytic anemia  (IAGP)
male infertility  (IAGP)
myelencephalic blebs  (IEA)
non-pigmented tail tip  (IAGP)
pale liver  (IAGP)
pallor  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IEA)
prenatal lethality, incomplete penetrance  (IAGP)
reduced female fertility  (IAGP)
reduced fertility  (IEA)
reduced male fertility  (IAGP)
reticulocytosis  (IEA)
small ovary  (IAGP)
spina bifida  (IEA)
spleen hyperplasia  (IAGP)
stomach inflammation  (IAGP)
thymus atrophy  (IAGP)
vagina atresia  (IEA)
variable body spotting  (IEA)
weight loss  (IAGP)
white spotting  (IAGP)

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Delayed gastric emptying and disruption of the interstitial cells of Cajal network after gastric ischaemia and reperfusion. Suzuki S, etal., Neurogastroenterol Motil. 2010 May;22(5):585-93, e126. doi: 10.1111/j.1365-2982.2009.01444.x. Epub 2009 Dec 23.
9. miR-222 regulates cell growth, apoptosis, and autophagy of interstitial cells of Cajal isolated from slow transit constipation rats by targeting c-kit. Zheng H, etal., Indian J Gastroenterol. 2021 Apr;40(2):198-208. doi: 10.1007/s12664-020-01143-7. Epub 2021 Apr 1.
Additional References at PubMed
PMID:102659   PMID:319242   PMID:367470   PMID:389712   PMID:518536   PMID:627255   PMID:658175   PMID:688326   PMID:1084999   PMID:1170085   PMID:1183807   PMID:1280558  
PMID:1280935   PMID:1281492   PMID:1325193   PMID:1359872   PMID:1371079   PMID:1371359   PMID:1372488   PMID:1372540   PMID:1374350   PMID:1375116   PMID:1376287   PMID:1378327  
PMID:1378413   PMID:1381512   PMID:1383066   PMID:1383087   PMID:1559233   PMID:1655629   PMID:1685136   PMID:1698553   PMID:1698554   PMID:1698555   PMID:1698556   PMID:1698557  
PMID:1698558   PMID:1699134   PMID:1705866   PMID:1711207   PMID:1714375   PMID:1715096   PMID:1720867   PMID:1724902   PMID:1726043   PMID:1726456   PMID:1726563   PMID:1764248  
PMID:1811937   PMID:1879343   PMID:1924386   PMID:1979872   PMID:2004558   PMID:2308957   PMID:2380119   PMID:2460075   PMID:2571572   PMID:3297105   PMID:3342938   PMID:3416768  
PMID:3416769   PMID:3535785   PMID:3943567   PMID:3987963   PMID:4067308   PMID:4392283   PMID:4575201   PMID:4692863   PMID:4884354   PMID:4920403   PMID:5296838   PMID:5917257  
PMID:6494907   PMID:6630999   PMID:6667852   PMID:6713385   PMID:6971254   PMID:7000343   PMID:7103928   PMID:7333462   PMID:7505667   PMID:7507105   PMID:7507447   PMID:7507859  
PMID:7508684   PMID:7509207   PMID:7513208   PMID:7513517   PMID:7514901   PMID:7515099   PMID:7515884   PMID:7519481   PMID:7520886   PMID:7521281   PMID:7524893   PMID:7530502  
PMID:7530826   PMID:7531500   PMID:7531701   PMID:7533739   PMID:7534243   PMID:7534619   PMID:7536655   PMID:7537111   PMID:7540155   PMID:7540890   PMID:7541320   PMID:7542059  
PMID:7542101   PMID:7552996   PMID:7615634   PMID:7677988   PMID:7681989   PMID:7682413   PMID:7683280   PMID:7683283   PMID:7683286   PMID:7684700   PMID:7686505   PMID:7686845  
PMID:7689991   PMID:7690439   PMID:7691001   PMID:7691275   PMID:7691882   PMID:7744007   PMID:7961179   PMID:7961765   PMID:8006601   PMID:8034307   PMID:8034315   PMID:8050356  
PMID:8069909   PMID:8157970   PMID:8221886   PMID:8287471   PMID:8288218   PMID:8369223   PMID:8375656   PMID:8486363   PMID:8490655   PMID:8499630   PMID:8524262   PMID:8562971  
PMID:8595902   PMID:8605335   PMID:8639822   PMID:8700840   PMID:8703029   PMID:8704204   PMID:8725218   PMID:8743987   PMID:8783939   PMID:8806824   PMID:8835531   PMID:8849898  
PMID:8849899   PMID:8870099   PMID:8875893   PMID:8889548   PMID:8896402   PMID:8906425   PMID:8912926   PMID:8943846   PMID:8981233   PMID:9006068   PMID:9012511   PMID:9131012  
PMID:9197334   PMID:9203987   PMID:9269751   PMID:9360640   PMID:9439574   PMID:9454740   PMID:9507248   PMID:9524576   PMID:9540971   PMID:9558284   PMID:9619371   PMID:9751763  
PMID:9753493   PMID:9778516   PMID:9811459   PMID:9857188   PMID:9870661   PMID:9922406   PMID:9927325   PMID:9988212   PMID:10077527   PMID:10079228   PMID:10094931   PMID:10349636  
PMID:10364428   PMID:10430593   PMID:10452990   PMID:10456866   PMID:10477720   PMID:10613820   PMID:10620616   PMID:10631167   PMID:10645946   PMID:10655061   PMID:10706703   PMID:10712011  
PMID:10729342   PMID:10753526   PMID:10769236   PMID:10779785   PMID:10817584   PMID:10872802   PMID:10932191   PMID:10943842   PMID:11042159   PMID:11076861   PMID:11165475   PMID:11217851  
PMID:11226047   PMID:11259383   PMID:11401406   PMID:11435472   PMID:11599050   PMID:11602622   PMID:11696590   PMID:11811778   PMID:11900972   PMID:11950883   PMID:11964302   PMID:12019292  
PMID:12028583   PMID:12080001   PMID:12137920   PMID:12140361   PMID:12149208   PMID:12149209   PMID:12149210   PMID:12163450   PMID:12165531   PMID:12215644   PMID:12231645   PMID:12242244  
PMID:12242245   PMID:12244200   PMID:12453875   PMID:12466851   PMID:12477932   PMID:12482503   PMID:12533025   PMID:12606380   PMID:12606404   PMID:12624490   PMID:12629181   PMID:12644183  
PMID:12647239   PMID:12691919   PMID:12714518   PMID:12752260   PMID:12833143   PMID:12881302   PMID:12890724   PMID:12960281   PMID:14525951   PMID:14566948   PMID:14597766   PMID:14610273  
PMID:14660441   PMID:14662336   PMID:14681479   PMID:14687547   PMID:14736745   PMID:14871802   PMID:15020477   PMID:15024423   PMID:15039234   PMID:15039943   PMID:15147765   PMID:15191564  
PMID:15226823   PMID:15326356   PMID:15466618   PMID:15475566   PMID:15489334   PMID:15502858   PMID:15530856   PMID:15659488   PMID:15760467   PMID:15765184   PMID:15855272   PMID:15858069  
PMID:15917341   PMID:15921521   PMID:15938716   PMID:15947484   PMID:15970507   PMID:16107646   PMID:16123204   PMID:16141072   PMID:16141073   PMID:16157686   PMID:16284245   PMID:16291796  
PMID:16401694   PMID:16410189   PMID:16416028   PMID:16427619   PMID:16533754   PMID:16564520   PMID:16602821   PMID:16611364   PMID:16675518   PMID:16820414   PMID:16931795   PMID:16934000  
PMID:16942767   PMID:16964442   PMID:17035642   PMID:17107997   PMID:17145782   PMID:17157170   PMID:17185318   PMID:17242176   PMID:17242400   PMID:17257055   PMID:17284534   PMID:17327414  
PMID:17344430   PMID:17431131   PMID:17442747   PMID:17449931   PMID:17467686   PMID:17493606   PMID:17556359   PMID:17625108   PMID:17629744   PMID:17654122   PMID:17885078   PMID:17914072  
PMID:17932226   PMID:17936260   PMID:17942981   PMID:17969148   PMID:17981124   PMID:18036996   PMID:18156208   PMID:18287559   PMID:18304480   PMID:18423881   PMID:18454155   PMID:18454205  
PMID:18467506   PMID:18480165   PMID:18499891   PMID:18502833   PMID:18524989   PMID:18549896   PMID:18569387   PMID:18578951   PMID:18579678   PMID:18593919   PMID:18606918   PMID:18616936  
PMID:18653561   PMID:18725415   PMID:18753636   PMID:18768855   PMID:18799476   PMID:18832724   PMID:18973680   PMID:19000842   PMID:19014927   PMID:19078959   PMID:19145072   PMID:19209180  
PMID:19279135   PMID:19341483   PMID:19420736   PMID:19538736   PMID:19682281   PMID:19713309   PMID:19783672   PMID:19822650   PMID:19828636   PMID:19865483   PMID:19874813   PMID:19875700  
PMID:19876815   PMID:20023630   PMID:20117247   PMID:20385801   PMID:20417197   PMID:20427772   PMID:20460368   PMID:20572009   PMID:20581042   PMID:20709954   PMID:20833365   PMID:20845430  
PMID:20969841   PMID:20980401   PMID:21123517   PMID:21127173   PMID:21192082   PMID:21200435   PMID:21267068   PMID:21383156   PMID:21386911   PMID:21406540   PMID:21514445   PMID:21540074  
PMID:21634019   PMID:21664343   PMID:21677750   PMID:21873635   PMID:21877248   PMID:21949025   PMID:21976438   PMID:21998739   PMID:22024978   PMID:22269660   PMID:22281595   PMID:22464328  
PMID:22529299   PMID:22623663   PMID:22637532   PMID:22682244   PMID:22689450   PMID:22696295   PMID:22736941   PMID:22984182   PMID:23077213   PMID:23274689   PMID:23389444   PMID:23409152  
PMID:23426945   PMID:23497137   PMID:23575831   PMID:23577751   PMID:23702581   PMID:23750212   PMID:23827712   PMID:23831378   PMID:24068671   PMID:24116170   PMID:24453276   PMID:24487590  
PMID:24733849   PMID:24790137   PMID:24829419   PMID:24880339   PMID:24944064   PMID:24952961   PMID:24953181   PMID:24999927   PMID:25107671   PMID:25241746   PMID:25406395   PMID:25449280  
PMID:25727244   PMID:25779020   PMID:25887124   PMID:25899394   PMID:25934999   PMID:25955205   PMID:26008799   PMID:26416744   PMID:26507072   PMID:26705118   PMID:26776520   PMID:26952187  
PMID:26978025   PMID:27100196   PMID:27245949   PMID:27619074   PMID:27646003   PMID:28130213   PMID:28207192   PMID:28215940   PMID:28218391   PMID:28218906   PMID:28315973   PMID:28465357  
PMID:28481328   PMID:28580775   PMID:28714970   PMID:28986094   PMID:29207043   PMID:29330760   PMID:29394901   PMID:29405286   PMID:29555646   PMID:29596064   PMID:29628393   PMID:29934585  
PMID:30166337   PMID:30410062   PMID:30571485   PMID:30650358   PMID:30661958   PMID:30792196   PMID:31399471   PMID:31521820   PMID:31761723   PMID:31872525   PMID:31898934   PMID:31914398  
PMID:32220331   PMID:32242818   PMID:32914934   PMID:34815802   PMID:34818550   PMID:35079138   PMID:35259210   PMID:35364055   PMID:35377797   PMID:35512705   PMID:35550124   PMID:35568059  
PMID:35831953   PMID:36596814  


Comparative Map Data
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm391099,851,477 - 99,936,278 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1099,851,492 - 99,936,278 (+)EnsemblGRCm39 Ensembl
GRCm3810100,015,615 - 100,100,416 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10100,015,630 - 100,100,416 (+)EnsemblGRCm38mm10GRCm38
MGSCv371099,478,458 - 99,563,046 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361099,445,512 - 99,530,100 (+)NCBIMGSCv36mm8
Celera10101,983,926 - 102,068,221 (+)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1051.4NCBI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh381288,492,793 - 88,580,471 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1288,492,793 - 88,580,851 (-)EnsemblGRCh38hg38GRCh38
GRCh371288,886,570 - 88,974,248 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361287,410,697 - 87,498,369 (-)NCBINCBI36Build 36hg18NCBI36
Build 341287,389,036 - 87,476,706NCBI
Celera1288,556,999 - 88,644,657 (-)NCBICelera
Cytogenetic Map12q21.32NCBI
HuRef1285,953,228 - 86,040,884 (-)NCBIHuRef
CHM1_11288,851,652 - 88,939,322 (-)NCBICHM1_1
T2T-CHM13v2.01288,474,752 - 88,562,405 (-)NCBIT2T-CHM13v2.0
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
mRatBN7.2734,896,075 - 34,977,215 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl734,896,053 - 34,977,214 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx736,884,748 - 36,965,896 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0739,066,514 - 39,147,673 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0738,799,729 - 38,880,883 (+)NCBIRnor_WKY
Rnor_6.0742,269,784 - 42,351,054 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl742,269,784 - 42,351,054 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0742,302,651 - 42,383,921 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4737,714,157 - 37,795,722 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1737,734,427 - 37,804,538 (+)NCBI
Celera731,898,840 - 31,979,932 (+)NCBICelera
RH 3.4 Map7286.2RGD
Cytogenetic Map7q21NCBI
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
ChiLan1.0 EnsemblNW_00495540525,886,447 - 25,969,395 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540525,816,137 - 25,969,006 (-)NCBIChiLan1.0ChiLan1.0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
PanPan1.11289,341,921 - 89,436,081 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1289,341,921 - 89,436,758 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01286,036,501 - 86,124,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
CanFam3.11529,591,068 - 29,671,985 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1529,591,170 - 29,671,974 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1530,041,648 - 30,122,153 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01530,230,533 - 30,311,189 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1530,230,587 - 30,311,541 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11529,545,261 - 29,626,200 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01529,607,389 - 29,688,442 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01529,890,288 - 29,970,909 (-)NCBIUU_Cfam_GSD_1.0
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
HiC_Itri_2NW_02440494530,584,662 - 30,669,431 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365075,565,821 - 5,650,828 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365075,566,144 - 5,650,412 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
Sscrofa11.1 Ensembl594,017,387 - 94,110,214 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1594,016,992 - 94,110,219 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2598,745,850 - 98,834,052 (+)NCBISscrofa10.2Sscrofa10.2susScr3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
ChlSab1.11183,856,149 - 83,943,095 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1183,856,157 - 83,943,083 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037161,319,600 - 161,407,409 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
HetGla_female_1.0 EnsemblNW_0046248377,456,120 - 7,541,730 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248377,456,116 - 7,541,764 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1144
Count of miRNA genes:614
Interacting mature miRNAs:728
Transcripts:ENSMUST00000020129, ENSMUST00000105283, ENSMUST00000130190
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
1357831Igf1sl2_mIGF-1 serum levels 2 (mouse)Not determined108769412799936278Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
13208554Lgth11_mbody length 11 (mouse)1090835862120835905Mouse
1302162Ednrbm1_mendothelin receptor type B modifier 1 (mouse)Not determined1092127383103713756Mouse
12910821Ogrq4_moverall growth rate QTL 4 (mouse)1092169056107319989Mouse
4142074Tmevp2_mTheiler's murine encephalomyelitis virus persistence 2 (mouse)Not determined92729941111568319Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
11059552Lmr32c_mleishmaniasis resistance 32c (mouse)1099309418116220862Mouse
11059544Lmr32_mleishmaniasis resistance 32 (mouse)1099309418116220862Mouse

Markers in Region
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810100,097,623 - 100,097,766UniSTSGRCm38
MGSCv371099,560,257 - 99,560,400UniSTSGRCm37
Celera10102,065,432 - 102,065,575UniSTS
Cytogenetic Map10D1UniSTS
cM Map1057.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810100,087,392 - 100,088,180UniSTSGRCm38
MGSCv371099,559,367 - 99,559,851UniSTSGRCm37
MGSCv371099,562,461 - 99,562,973UniSTSGRCm37
MGSCv371099,549,997 - 99,550,061UniSTSGRCm37
Celera10102,055,200 - 102,055,988UniSTS
Cytogenetic Map10D1UniSTS
cM Map1057.0UniSTS
cM Map1057.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810100,080,048 - 100,080,926UniSTSGRCm38
MGSCv371099,542,682 - 99,543,560UniSTSGRCm37
Celera10102,047,822 - 102,048,700UniSTS
Cytogenetic Map10D1UniSTS
cM Map1057.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
cM Map1057.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810100,087,363 - 100,087,427UniSTSGRCm38
MGSCv371099,549,997 - 99,550,061UniSTSGRCm37
Celera10102,055,171 - 102,055,235UniSTS
Cytogenetic Map10D1UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810100,099,827 - 100,100,339UniSTSGRCm38
MGSCv371099,562,461 - 99,562,973UniSTSGRCm37
Celera10102,067,636 - 102,068,148UniSTS
Cytogenetic Map10D1UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810100,096,733 - 100,097,217UniSTSGRCm38
MGSCv371099,559,367 - 99,559,851UniSTSGRCm37
Celera10102,064,541 - 102,065,025UniSTS
Cytogenetic Map10D1UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS



Nucleotide Sequences
RefSeq Transcripts NM_001347156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU700928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M57647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M59912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M59915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M64262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S40364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S40534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S40536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U44724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U44725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U63649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X68989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X99322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y10287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000020129   ⟹   ENSMUSP00000020129
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1099,851,778 - 99,932,260 (+)Ensembl
GRCm38.p6 Ensembl10100,015,916 - 100,096,398 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105283   ⟹   ENSMUSP00000100920
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1099,851,492 - 99,936,278 (+)Ensembl
GRCm38.p6 Ensembl10100,015,630 - 100,100,416 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130190   ⟹   ENSMUSP00000123360
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1099,851,688 - 99,912,764 (+)Ensembl
GRCm38.p6 Ensembl10100,015,826 - 100,076,902 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218200   ⟹   ENSMUSP00000151554
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1099,851,689 - 99,931,980 (+)Ensembl
GRCm38.p6 Ensembl10100,015,827 - 100,096,118 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219050
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1099,851,686 - 99,891,672 (+)Ensembl
GRCm38.p6 Ensembl10100,015,824 - 100,055,810 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219881
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1099,923,918 - 99,933,043 (+)Ensembl
GRCm38.p6 Ensembl10100,088,056 - 100,097,181 (+)Ensembl
RefSeq Acc Id: NM_001347156   ⟹   NP_001334085
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm391099,851,683 - 99,936,278 (+)NCBI
GRCm3810100,015,821 - 100,100,416 (+)NCBI
RefSeq Acc Id: NM_013598   ⟹   NP_038626
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm391099,851,683 - 99,936,278 (+)NCBI
GRCm3810100,015,821 - 100,100,416 (+)NCBI
MGSCv371099,478,458 - 99,563,046 (+)RGD
Celera10101,983,926 - 102,068,221 (+)RGD
RefSeq Acc Id: XM_006513314   ⟹   XP_006513377
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm391099,851,477 - 99,936,136 (+)NCBI
GRCm3810100,015,615 - 100,100,416 (+)NCBI
RefSeq Acc Id: XM_006513315   ⟹   XP_006513378
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm391099,851,662 - 99,936,278 (+)NCBI
GRCm3810100,015,824 - 100,098,166 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_038626   ⟸   NM_013598
- Peptide Label: isoform 1 precursor
- UniProtKB: Q921N5 (UniProtKB/Swiss-Prot),   P20826 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513378   ⟸   XM_006513315
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006513377   ⟸   XM_006513314
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001334085   ⟸   NM_001347156
- Peptide Label: isoform 2 precursor
- UniProtKB: P20826 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000151554   ⟸   ENSMUST00000218200
RefSeq Acc Id: ENSMUSP00000123360   ⟸   ENSMUST00000130190
RefSeq Acc Id: ENSMUSP00000100920   ⟸   ENSMUST00000105283
RefSeq Acc Id: ENSMUSP00000020129   ⟸   ENSMUST00000020129

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P20826-F1-model_v2 AlphaFold P20826 1-273 view protein structure

RGD ID:6819482
Promoter ID:MM_KWN:5480
SO ACC ID:SO:0000170
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4
Transcripts:ENSMUST00000099320,   ENSMUST00000105283,   UC007GXQ.1,   UC007GXR.1
Mouse AssemblyChrPosition (strand)Source
MGSCv361099,478,211 - 99,478,711 (+)MPROMDB
RGD ID:6819485
Promoter ID:MM_KWN:5482
SO ACC ID:SO:0000170
Tissues & Cell Lines:Lung
Mouse AssemblyChrPosition (strand)Source
MGSCv361099,554,346 - 99,554,846 (+)MPROMDB
RGD ID:8673168
Promoter ID:EPDNEW_M14615
Type:single initiation site
Description:Mus musculus kit ligand , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database,
Experiment Methods:Single-end sequencing.
Mouse AssemblyChrPosition (strand)Source
GRCm3810100,015,827 - 100,015,887EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96974 AgrOrtholog
Ensembl Genes ENSMUSG00000019966 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000020129 ENTREZGENE
  ENSMUSP00000020129.8 UniProtKB/Swiss-Prot
  ENSMUSP00000100920.2 UniProtKB/Swiss-Prot
  ENSMUSP00000123360.2 UniProtKB/TrEMBL
  ENSMUSP00000151554.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020129 ENTREZGENE
  ENSMUST00000020129.8 UniProtKB/Swiss-Prot
  ENSMUST00000105283.9 UniProtKB/Swiss-Prot
  ENSMUST00000130190.8 UniProtKB/TrEMBL
  ENSMUST00000218200.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17311 UniProtKB/Swiss-Prot
  PTHR11574 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SCF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kitl PhenoGen
PIRSF SCF UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47266 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P773_MOUSE UniProtKB/TrEMBL
  Q61854_MOUSE UniProtKB/TrEMBL
  SCF_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P97332 UniProtKB/Swiss-Prot
  Q3TNJ7 UniProtKB/Swiss-Prot
  Q62524 UniProtKB/Swiss-Prot
  Q64222 UniProtKB/Swiss-Prot
  Q921N5 UniProtKB/Swiss-Prot