Rap1b (RAS related protein 1b) - Rat Genome Database

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Gene: Rap1b (RAS related protein 1b) Mus musculus
Analyze
Symbol: Rap1b
Name: RAS related protein 1b
RGD ID: 736931
MGI Page MGI
Description: Enables G protein activity. Involved in modification of postsynaptic structure. Acts upstream of or within several processes, including negative regulation of regulated secretory pathway; positive regulation of ERK1 and ERK2 cascade; and small GTPase-mediated signal transduction. Is active in glutamatergic synapse. Is expressed in brain and eye. Human ortholog(s) of this gene implicated in thrombocytopenia. Orthologous to several human genes including RAP1B (RAP1B, member of RAS oncogene family).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810443E11Rik; GTP-binding protein smg p21B; ras-related protein Rap-1b
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm15382  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910117,650,502 - 117,681,879 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10117,649,776 - 117,681,940 (-)EnsemblGRCm39 Ensembl
GRCm3810117,814,597 - 117,845,974 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10117,813,871 - 117,846,035 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710117,251,653 - 117,283,030 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610117,217,590 - 117,248,967 (-)NCBIMGSCv36mm8
Celera10119,752,445 - 119,762,526 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1066.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2-bromohexadecanoic acid  (ISO)
2-hydroxypropanoic acid  (ISO)
3',5'-cyclic AMP  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
8-Br-cAMP  (ISO)
acrolein  (ISO)
alpha-pinene  (ISO)
Aroclor 1254  (EXP)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bleomycin A2  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cisplatin  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
fipronil  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gallic acid  (ISO)
gentamycin  (ISO)
GTP  (ISO)
haloperidol  (ISO)
hydrogen cyanide  (EXP)
ivermectin  (ISO)
lead(0)  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel subsulfide  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
Pentoxifylline  (ISO)
perfluorohexanesulfonic acid  (EXP)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP)
progesterone  (ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP)
rolipram  (ISO)
rotenone  (ISO)
sodium arsenite  (EXP,ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thalidomide  (EXP)
thioacetamide  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
valproic acid  (ISO)
vancomycin  (EXP)
zearalenone  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. High glucose stimulates synthesis of fibronectin via a novel protein kinase C, Rap1b, and B-Raf signaling pathway. Lin S, etal., J Biol Chem. 2002 Nov 1;277(44):41725-35. Epub 2002 Aug 23.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1555775   PMID:8889548   PMID:9330640   PMID:10349636   PMID:10922068   PMID:10926822   PMID:11042159   PMID:11056535   PMID:11076861   PMID:11544199   PMID:12477932   PMID:14610273  
PMID:14712229   PMID:15331589   PMID:15489334   PMID:15696195   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16357324   PMID:17993608   PMID:18056377   PMID:18191594   PMID:18305243  
PMID:18319399   PMID:18422604   PMID:18577515   PMID:18714009   PMID:18753253   PMID:18799693   PMID:18805968   PMID:19192113   PMID:20413728   PMID:20733035   PMID:21636859   PMID:21677750  
PMID:21873635   PMID:21940635   PMID:21945075   PMID:23209302   PMID:23230271   PMID:23416045   PMID:23616533   PMID:24039860   PMID:24457600   PMID:24642466   PMID:24790136   PMID:25092872  
PMID:25705885   PMID:25721469   PMID:25807985   PMID:26212757   PMID:26324702   PMID:26410627   PMID:26483383   PMID:26634692   PMID:26714318   PMID:26733533   PMID:26804993   PMID:26844834  
PMID:26921307   PMID:27034005   PMID:27626668   PMID:28137909   PMID:28520221   PMID:29222111   PMID:29320740   PMID:29360039   PMID:29882482   PMID:30131434   PMID:30354217   PMID:30592646  
PMID:31403469   PMID:32296045   PMID:32325033   PMID:32539601   PMID:32651478   PMID:33104169   PMID:33267664   PMID:33974562   PMID:34140948   PMID:35197328   PMID:35998584   PMID:36001955  
PMID:36403190   PMID:36782228   PMID:37267105   PMID:37276970   PMID:37545505   PMID:37598341   PMID:38010922  


Genomics

Comparative Map Data
Rap1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910117,650,502 - 117,681,879 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10117,649,776 - 117,681,940 (-)EnsemblGRCm39 Ensembl
GRCm3810117,814,597 - 117,845,974 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10117,813,871 - 117,846,035 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710117,251,653 - 117,283,030 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610117,217,590 - 117,248,967 (-)NCBIMGSCv36mm8
Celera10119,752,445 - 119,762,526 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1066.32NCBI
RAP1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381268,610,899 - 68,671,901 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1268,610,855 - 68,671,901 (+)EnsemblGRCh38hg38GRCh38
GRCh371269,004,679 - 69,065,681 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361267,290,919 - 67,340,641 (+)NCBINCBI36Build 36hg18NCBI36
Build 341267,290,918 - 67,340,644NCBI
Celera1268,668,392 - 68,717,826 (+)NCBICelera
Cytogenetic Map12q15NCBI
HuRef1266,093,121 - 66,105,030 (+)NCBIHuRef
CHM1_11268,972,799 - 69,022,538 (+)NCBICHM1_1
T2T-CHM13v2.01268,590,436 - 68,651,443 (+)NCBIT2T-CHM13v2.0
Rap1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8755,308,922 - 55,342,217 (-)NCBIGRCr8
mRatBN7.2753,423,039 - 53,456,349 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl753,423,130 - 53,456,370 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx755,333,280 - 55,340,337 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0757,536,389 - 57,543,446 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0757,314,247 - 57,321,304 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0760,850,406 - 60,878,226 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl760,853,930 - 60,860,990 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0760,850,369 - 60,879,083 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4757,132,750 - 57,139,811 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1757,150,631 - 57,182,957 (-)NCBI
Celera750,197,811 - 50,204,871 (-)NCBICelera
Cytogenetic Map7q22NCBI
Rap1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545815,080,778 - 15,123,203 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545815,110,709 - 15,121,868 (+)NCBIChiLan1.0ChiLan1.0
RAP1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21076,628,927 - 76,679,160 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11276,625,344 - 76,675,630 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01266,122,212 - 66,172,450 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11268,919,369 - 68,955,650 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1268,942,053 - 68,955,649 (+)Ensemblpanpan1.1panPan2
RAP1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11010,805,359 - 10,816,839 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1010,805,357 - 10,815,575 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1010,700,667 - 10,750,121 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01010,891,820 - 10,941,270 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1010,891,815 - 10,941,253 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11010,759,466 - 10,808,891 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01011,005,977 - 11,055,507 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01011,128,484 - 11,177,911 (+)NCBIUU_Cfam_GSD_1.0
Rap1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494547,531,710 - 47,542,147 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365456,568,577 - 6,574,595 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365456,567,873 - 6,578,404 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAP1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl532,910,259 - 32,964,870 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1532,910,181 - 32,961,972 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2535,681,835 - 35,733,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAP1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11164,240,501 - 64,290,515 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1164,240,651 - 64,286,727 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037181,414,337 - 181,465,079 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rap1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624948623,527 - 664,000 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624948623,527 - 664,044 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rap1b
1042 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:307
Count of miRNA genes:244
Interacting mature miRNAs:257
Transcripts:ENSMUST00000064667
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
26884377Skwq3_mskull length QTL 3, 5 week (mouse)10114635905122735905Mouse
26884383Bzwq3_mbi-zygomatic width QTL 3, 5 week (mouse)10114235905122735905Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
13208554Lgth11_mbody length 11 (mouse)1090835862120835905Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1300796Lmr5_mleishmaniasis resistance 5 (mouse)Not determined10116220635122179828Mouse
10412078Hylaq3_mHyperlocomotor activity related QTL 3 (mouse)Not determined10111568226117986649Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884391Skwq11_mskull length QTL 11, 16 week (mouse)10113535905121635905Mouse
13506931Recrq11_mrecombination rate in male meiosis QTL 11 (mouse)10114335905123635905Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
27095902Scvln11_msacral vertebrae length 2, 10 week (mouse)10110035861125435869Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
26884433Zlq2_mzygomatic length QTL 2, 5 week (mouse)10113535905125735869Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
4141269Ipng2_mimprinted postnatal growth 2 (mouse)Not determined105088254118497353Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
11353823Homaq2_mhomeostatic model assessment QTL 2 (mouse)10110453347125515907Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
11353822Insq12_minsulin QTL 12 (mouse)10110453347125515907Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102735861123235905Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
27226722Tibw7_mtibia width 7, proximal, 16 week (mouse)10108635861125435869Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_024457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC135019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU848028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY369341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK793274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO803632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M79314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000064667   ⟹   ENSMUSP00000066238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10117,649,776 - 117,681,940 (-)Ensembl
GRCm38.p6 Ensembl10117,813,871 - 117,846,035 (-)Ensembl
Ensembl Acc Id: ENSMUST00000220214   ⟹   ENSMUSP00000151578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10117,651,565 - 117,654,445 (-)Ensembl
GRCm38.p6 Ensembl10117,815,660 - 117,818,540 (-)Ensembl
RefSeq Acc Id: NM_024457   ⟹   NP_077777
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910117,650,502 - 117,681,879 (-)NCBI
GRCm3810117,814,597 - 117,845,974 (-)ENTREZGENE
MGSCv3710117,251,653 - 117,283,030 (-)RGD
Celera10119,752,445 - 119,762,526 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_077777   ⟸   NM_024457
- UniProtKB: Q99JI6 (UniProtKB/Swiss-Prot),   Q3V3W9 (UniProtKB/TrEMBL),   Q52L50 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000066238   ⟸   ENSMUST00000064667
Ensembl Acc Id: ENSMUSP00000151578   ⟸   ENSMUST00000220214

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99JI6-F1-model_v2 AlphaFold Q99JI6 1-184 view protein structure

Promoters
RGD ID:6846774
Promoter ID:MM_ACW:6134
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:RAP1B.HSEP07-UNSPLICED,   RAP1B.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610117,255,181 - 117,255,681 (-)MPROMDB
RGD ID:6848975
Promoter ID:MM_XEF:872
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_4Hour,   Brain
Transcripts:NM_001007852,   NM_001008194,   NM_001086722,   NM_069148,   NM_069694,   NM_134346,   NM_199533
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610117,261,294 - 117,261,794 (-)MPROMDB
RGD ID:6819789
Promoter ID:MM_KWN:5708
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000064667
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610117,282,636 - 117,283,932 (-)MPROMDB
RGD ID:8673340
Promoter ID:EPDNEW_M14701
Type:initiation region
Name:Rap1b_1
Description:Mus musculus RAS related protein 1b , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810117,845,995 - 117,846,055EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:894315 AgrOrtholog
Ensembl Genes ENSMUSG00000052681 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000064667 ENTREZGENE
  ENSMUST00000064667.9 UniProtKB/Swiss-Prot
  ENSMUST00000220214.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rap1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase_Ras-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:215449 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:894315 ENTREZGENE
NCBI Gene Rap1b ENTREZGENE
PANTHER PTHR24070 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAP-1B-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rap1b PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P777_MOUSE UniProtKB/TrEMBL
  Q3V3W9 ENTREZGENE
  Q52L50 ENTREZGENE, UniProtKB/TrEMBL
  Q99JI6 ENTREZGENE, UniProtKB/Swiss-Prot