Slc1a2 (solute carrier family 1 (glial high affinity glutamate transporter), member 2) - Rat Genome Database

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Gene: Slc1a2 (solute carrier family 1 (glial high affinity glutamate transporter), member 2) Mus musculus
Analyze
Symbol: Slc1a2
Name: solute carrier family 1 (glial high affinity glutamate transporter), member 2
RGD ID: 736773
MGI Page MGI
Description: Enables cysteine transmembrane transporter activity; high-affinity L-glutamate transmembrane transporter activity; and monoatomic anion transmembrane transporter activity. Involved in several processes, including L-glutamate import across plasma membrane; cellular response to cocaine; and glutathione biosynthetic process. Acts upstream of or within several processes, including L-glutamate transmembrane transport; monoatomic anion transmembrane transport; and positive regulation of glucose import. Located in several cellular components, including astrocyte projection; axolemma; and membrane raft. Is active in glutamatergic synapse. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system gland; and spinal cord. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 41. Orthologous to human SLC1A2 (solute carrier family 1 member 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700091C19Rik; 2900019G14Rik; AI159670; Eaa; Eaat2; EAAT2 variant mEAAT2/5UT2; EAAT2 variant mEAAT2/5UT5; excitatory amino acid transporter 2; glial high affinity glutamate transporter; GLT; GLT-; GLT-1; GLT1; glutamate transporter 1c; MGLT; MGLT1; RIKEN cDNA 2900019G14 gene; sodium-dependent glutamate/aspartate transporter 2; solute carrier family 1 member 2; solute carrier family 1, member 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392102,488,584 - 102,621,129 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2102,489,004 - 102,621,129 (+)EnsemblGRCm39 Ensembl
GRCm382102,658,239 - 102,790,784 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2102,658,659 - 102,790,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv372102,498,840 - 102,630,941 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362102,507,277 - 102,578,945 (+)NCBIMGSCv36mm8
Celera2103,898,008 - 104,034,664 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
(4-chloro-2-methylphenoxy)acetic acid  (ISO)
(R,R,R)-alpha-tocopherol  (ISO)
1,2-dichloroethane  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,3-bis(4-hydroxyphenyl)propionitrile  (ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2-chloroethanol  (ISO)
2-palmitoylglycerol  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3,3',5-triiodo-L-thyronine  (EXP)
3-phenylprop-2-enal  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-aza-2'-deoxycytidine  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (EXP,ISO)
ammonium chloride  (ISO)
ampicillin  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (ISO)
atorvastatin calcium  (EXP)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A2  (ISO)
buta-1,3-diene  (EXP)
butanal  (ISO)
Butylparaben  (ISO)
butyric acid  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (EXP)
cannabigerol  (EXP)
carbon nanotube  (EXP)
ceftriaxone  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP,ISO)
cisplatin  (ISO)
clofibrate  (EXP)
clozapine  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP,ISO)
coumarin  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
deguelin  (ISO)
dexamethasone  (EXP)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzacamene  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP,ISO)
fentin chloride  (ISO)
folic acid  (EXP)
folpet  (EXP)
fulvestrant  (ISO)
furan  (ISO)
genistein  (ISO)
guanosine  (EXP)
haloperidol  (ISO)
hesperidin  (ISO)
hydrogen peroxide  (ISO)
indole-3-methanol  (ISO)
ivermectin  (ISO)
kainic acid  (EXP,ISO)
ketamine  (EXP,ISO)
KT 5720  (ISO)
L-serine  (ISO)
lanthanum trichloride  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
linuron  (ISO)
lipopolysaccharide  (ISO)
LY294002  (ISO)
manganese atom  (EXP,ISO)
manganese(0)  (EXP,ISO)
manganese(II) chloride  (EXP,ISO)
mercury dibromide  (ISO)
metacetamol  (EXP)
methamphetamine  (EXP,ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
N-acetyl-L-cysteine  (ISO)
N-nitrosomorpholine  (ISO)
nifedipine  (ISO)
ochratoxin A  (ISO)
oxidopamine  (ISO)
oxybenzone  (ISO)
oxycodone  (ISO)
p-chloromercuribenzoic acid  (ISO)
p-toluidine  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraoxon  (ISO)
pentachlorophenol  (EXP)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenformin  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (EXP)
prochloraz  (ISO)
procymidone  (ISO)
propanal  (ISO)
pyrimidifen  (ISO)
pyrrolidine dithiocarbamate  (EXP,ISO)
quercetin  (ISO)
quinazolines  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rifampicin  (ISO)
Riluzole  (ISO)
romidepsin  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (ISO)
staurosporine  (ISO)
tamoxifen  (EXP)
tebufenpyrad  (ISO)
tetrachloromethane  (EXP,ISO)
thiamphenicol  (EXP,ISO)
thifluzamide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
Tungsten carbide  (ISO)
tyrphostin AG 1478  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
WIN 55212-2  (ISO)
zinc atom  (ISO)
zinc dichloride  (EXP)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Changes of NMDA receptor subunit (NR1, NR2B) and glutamate transporter (GLT1) mRNA expression in Huntington's disease--an in situ hybridization study. Arzberger T, etal., J Neuropathol Exp Neurol. 1997 Apr;56(4):440-54.
2. Altered NMDA receptor trafficking in a yeast artificial chromosome transgenic mouse model of Huntington's disease. Fan MM, etal., J Neurosci. 2007 Apr 4;27(14):3768-79.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Mouse excitatory amino acid transporter EAAT2: isolation, characterization, and proximity to neuroexcitability loci on mouse chromosome 2. Kirschner MA, etal., Genomics 1994 Nov 15;24(2):218-24.
5. Aberrant RNA processing in a neurodegenerative disease: the cause for absent EAAT2, a glutamate transporter, in amyotrophic lateral sclerosis. Lin CL, etal., Neuron 1998 Mar;20(3):589-602.
6. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
7. MGDs mouse GO annotations MGD data from the GO Consortium
8. MGD IEA MGD IEA
9. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. Mouse MP Annotation Import Pipeline RGD automated import pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Pharmacological evaluation of glutamate transporter 1 (GLT-1) mediated neuroprotection following cerebral ischemia/reperfusion injury. Verma R, etal., Eur J Pharmacol. 2010 Jul 25;638(1-3):65-71. doi: 10.1016/j.ejphar.2010.04.021. Epub 2010 Apr 24.
Additional References at PubMed
PMID:7557442   PMID:7587378   PMID:7766664   PMID:8601800   PMID:8733726   PMID:8786089   PMID:8889548   PMID:9129177   PMID:9180080   PMID:9373176   PMID:9379843   PMID:9539795  
PMID:9600674   PMID:9671661   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11553304   PMID:11784699   PMID:11849297   PMID:12135980   PMID:12153483   PMID:12477932   PMID:12546822  
PMID:12558972   PMID:12605408   PMID:12614333   PMID:12878755   PMID:12904478   PMID:12915461   PMID:12967927   PMID:14651853   PMID:14662797   PMID:14681479   PMID:14762132   PMID:14973295  
PMID:15009636   PMID:15140926   PMID:15187084   PMID:15254085   PMID:15305132   PMID:15390100   PMID:16141072   PMID:16141073   PMID:16197522   PMID:16377014   PMID:16407562   PMID:16567804  
PMID:16600856   PMID:16602821   PMID:16753145   PMID:16880397   PMID:17114649   PMID:17138558   PMID:17289278   PMID:17500595   PMID:17513050   PMID:17607354   PMID:17823119   PMID:17999180  
PMID:18353560   PMID:18367437   PMID:18463253   PMID:18501628   PMID:18551624   PMID:18614564   PMID:18805467   PMID:18985735   PMID:18992725   PMID:19168136   PMID:19201818   PMID:19323997  
PMID:19328838   PMID:19364521   PMID:19368827   PMID:19651762   PMID:19672971   PMID:19685014   PMID:20045054   PMID:20084116   PMID:20193040   PMID:20220082   PMID:20303959   PMID:20413507  
PMID:20531390   PMID:20549747   PMID:20958799   PMID:21267068   PMID:21291865   PMID:21335552   PMID:21429971   PMID:21488085   PMID:21536061   PMID:21677376   PMID:21853059   PMID:21873635  
PMID:21882244   PMID:21911209   PMID:22069320   PMID:22092549   PMID:22114258   PMID:22215633   PMID:22606296   PMID:22794259   PMID:23032072   PMID:23260145   PMID:23364798   PMID:23396537  
PMID:23516295   PMID:23586612   PMID:23828756   PMID:23939750   PMID:24026668   PMID:24095695   PMID:24154525   PMID:24224925   PMID:24280215   PMID:24307171   PMID:24569372   PMID:24623142  
PMID:24753081   PMID:24814819   PMID:24855648   PMID:24872566   PMID:24952961   PMID:25052197   PMID:25447940   PMID:25471567   PMID:25662838   PMID:25716834   PMID:25818008   PMID:25834045  
PMID:25834051   PMID:26081154   PMID:26496514   PMID:26567011   PMID:26628388   PMID:26974334   PMID:26976331   PMID:27155358   PMID:27160897   PMID:27179791   PMID:27208619   PMID:27281462  
PMID:27507650   PMID:27623095   PMID:27733606   PMID:28342750   PMID:28373281   PMID:28461494   PMID:28489004   PMID:28526579   PMID:28655840   PMID:28658620   PMID:28671696   PMID:28771710  
PMID:28821644   PMID:29051084   PMID:29214672   PMID:29303644   PMID:29350434   PMID:29458024   PMID:29463856   PMID:29468294   PMID:29530756   PMID:29709465   PMID:29722912   PMID:29880815  
PMID:30562941   PMID:30926746   PMID:30926783   PMID:31213067   PMID:31582286   PMID:31591195   PMID:31909584   PMID:32144526   PMID:32325033   PMID:32390810   PMID:32579270   PMID:32585762  
PMID:32768484   PMID:32950606   PMID:33154347   PMID:33675674   PMID:34166912   PMID:34246771   PMID:34321999   PMID:34333051   PMID:34709416   PMID:34731618   PMID:35035352   PMID:35434559  
PMID:35523583   PMID:35722615   PMID:35858542   PMID:36293380   PMID:36417873   PMID:36543780   PMID:36573349   PMID:36617748   PMID:36808153   PMID:37452008   PMID:38187761   PMID:38505613  


Genomics

Comparative Map Data
Slc1a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392102,488,584 - 102,621,129 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2102,489,004 - 102,621,129 (+)EnsemblGRCm39 Ensembl
GRCm382102,658,239 - 102,790,784 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2102,658,659 - 102,790,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv372102,498,840 - 102,630,941 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362102,507,277 - 102,578,945 (+)NCBIMGSCv36mm8
Celera2103,898,008 - 104,034,664 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.13NCBI
SLC1A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381135,251,205 - 35,420,507 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1135,251,205 - 35,420,063 (-)EnsemblGRCh38hg38GRCh38
GRCh371135,272,752 - 35,441,605 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361135,229,328 - 35,397,681 (-)NCBINCBI36Build 36hg18NCBI36
Build 341135,229,328 - 35,397,372NCBI
Celera1135,420,071 - 35,588,420 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1134,972,036 - 35,140,670 (-)NCBIHuRef
CHM1_11135,271,219 - 35,439,999 (-)NCBICHM1_1
T2T-CHM13v2.01135,389,505 - 35,559,339 (-)NCBIT2T-CHM13v2.0
Slc1a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83109,460,109 - 109,590,445 (+)NCBIGRCr8
mRatBN7.2389,005,129 - 89,135,469 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl389,005,129 - 89,126,498 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx392,504,212 - 92,634,668 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03101,103,236 - 101,233,691 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0398,927,305 - 99,057,642 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0392,518,679 - 92,665,731 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl392,640,752 - 92,665,644 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0399,168,111 - 99,308,723 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4387,870,558 - 87,992,401 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1387,766,997 - 87,888,821 (+)NCBI
Celera388,087,285 - 88,206,296 (+)NCBICelera
Cytogenetic Map3q32NCBI
Slc1a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542210,930,296 - 11,073,032 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542210,929,987 - 11,082,220 (+)NCBIChiLan1.0ChiLan1.0
SLC1A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2937,471,506 - 37,639,909 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11137,476,132 - 37,644,775 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,223,811 - 35,392,799 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,098,291 - 35,266,940 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,107,920 - 35,265,878 (-)Ensemblpanpan1.1panPan2
SLC1A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11832,565,258 - 32,717,052 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1832,565,258 - 32,709,225 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1832,172,140 - 32,315,018 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01833,175,536 - 33,327,487 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1833,175,537 - 33,319,660 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11832,737,141 - 32,880,123 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01832,322,154 - 32,465,264 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01832,967,648 - 33,106,043 (+)NCBIUU_Cfam_GSD_1.0
Slc1a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494729,654,306 - 29,802,620 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365332,779,518 - 2,918,298 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365332,779,650 - 2,918,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC1A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl225,604,950 - 25,848,276 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1225,603,892 - 25,771,840 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2227,968,216 - 28,136,634 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC1A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,845,512 - 30,012,261 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,847,043 - 29,989,975 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038126,963,701 - 127,135,271 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc1a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476711,768,951 - 11,911,017 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476711,768,942 - 11,919,315 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc1a2
4723 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5017
Count of miRNA genes:988
Interacting mature miRNAs:1496
Transcripts:ENSMUST00000005220, ENSMUST00000080210, ENSMUST00000111212, ENSMUST00000111213, ENSMUST00000123759, ENSMUST00000125085, ENSMUST00000128622, ENSMUST00000136221, ENSMUST00000136488, ENSMUST00000137466, ENSMUST00000145921, ENSMUST00000154446
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
4141448Mpaps1_mmicrophthalmia anophthalmia susceptibility 1 (mouse)Not determined97028557112115196Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse

Markers in Region
AB007810  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382102,782,009 - 102,782,148UniSTSGRCm38
MGSCv372102,622,166 - 102,622,305UniSTSGRCm37
Celera2104,025,898 - 104,026,037UniSTS
Cytogenetic Map2E2UniSTS
cM Map254.0UniSTS
Whitehead/MRC_RH21395.17UniSTS
D43796  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382102,781,662 - 102,781,828UniSTSGRCm38
MGSCv372102,621,819 - 102,621,985UniSTSGRCm37
Celera2104,025,551 - 104,025,717UniSTS
Cytogenetic Map2E2UniSTS
cM Map254.0UniSTS
Whitehead_YAC2 UniSTS
AI159670  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382102,790,425 - 102,790,545UniSTSGRCm38
MGSCv372102,630,582 - 102,630,702UniSTSGRCm37
Celera2104,034,305 - 104,034,425UniSTS
Cytogenetic Map2E2UniSTS
cM Map254.0UniSTS
Whitehead/MRC_RH21395.27UniSTS
RH138571  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382102,777,793 - 102,777,940UniSTSGRCm38
MGSCv372102,617,950 - 102,618,097UniSTSGRCm37
Celera2104,021,682 - 104,021,829UniSTS
Cytogenetic Map2E2UniSTS
cM Map254.0UniSTS
Slc1a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38158,635,062 - 8,635,589UniSTSGRCm38
MGSCv37158,585,062 - 8,585,589UniSTSGRCm37
Celera158,480,605 - 8,481,132UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map2E2UniSTS
cM Map156.7UniSTS
cM Map254.0UniSTS
cM Map254.0UniSTS
Slc1a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2E2UniSTS
cM Map254.0UniSTS
Slc1a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2E2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001077515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB007810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB007811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB007812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF528065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF528068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS448967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D43796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC825358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U11763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U24699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U75372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U75373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U75374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000005220   ⟹   ENSMUSP00000005220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2102,536,783 - 102,608,451 (+)Ensembl
GRCm38.p6 Ensembl2102,706,438 - 102,778,106 (+)Ensembl
Ensembl Acc Id: ENSMUST00000080210   ⟹   ENSMUSP00000079100
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2102,489,004 - 102,621,129 (+)Ensembl
GRCm38.p6 Ensembl2102,658,659 - 102,790,784 (+)Ensembl
Ensembl Acc Id: ENSMUST00000111212   ⟹   ENSMUSP00000106843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2102,536,783 - 102,612,088 (+)Ensembl
GRCm38.p6 Ensembl2102,706,438 - 102,781,743 (+)Ensembl
Ensembl Acc Id: ENSMUST00000111213   ⟹   ENSMUSP00000106844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2102,489,626 - 102,608,442 (+)Ensembl
GRCm38.p6 Ensembl2102,659,281 - 102,778,097 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123759   ⟹   ENSMUSP00000115129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2102,536,701 - 102,570,221 (+)Ensembl
GRCm38.p6 Ensembl2102,706,356 - 102,739,876 (+)Ensembl
Ensembl Acc Id: ENSMUST00000125085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2102,489,568 - 102,566,307 (+)Ensembl
GRCm38.p6 Ensembl2102,659,223 - 102,735,962 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128622
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2102,549,319 - 102,566,300 (+)Ensembl
GRCm38.p6 Ensembl2102,718,974 - 102,735,955 (+)Ensembl
Ensembl Acc Id: ENSMUST00000136221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2102,489,603 - 102,566,304 (+)Ensembl
GRCm38.p6 Ensembl2102,659,258 - 102,735,959 (+)Ensembl
Ensembl Acc Id: ENSMUST00000136488   ⟹   ENSMUSP00000122094
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2102,586,252 - 102,607,929 (+)Ensembl
GRCm38.p6 Ensembl2102,755,907 - 102,777,584 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137466
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2102,505,829 - 102,566,304 (+)Ensembl
GRCm38.p6 Ensembl2102,675,484 - 102,735,959 (+)Ensembl
Ensembl Acc Id: ENSMUST00000145921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2102,489,585 - 102,566,307 (+)Ensembl
GRCm38.p6 Ensembl2102,659,240 - 102,735,962 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154446   ⟹   ENSMUSP00000117549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2102,591,518 - 102,611,902 (+)Ensembl
GRCm38.p6 Ensembl2102,761,173 - 102,781,557 (+)Ensembl
RefSeq Acc Id: NM_001077514   ⟹   NP_001070982
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392102,489,034 - 102,621,129 (+)NCBI
GRCm382102,658,689 - 102,790,784 (+)NCBI
MGSCv372102,498,840 - 102,630,941 (+)RGD
Celera2103,898,008 - 104,034,664 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001077515   ⟹   NP_001070983
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392102,536,783 - 102,621,129 (+)NCBI
GRCm382102,706,438 - 102,790,784 (+)NCBI
MGSCv372102,498,840 - 102,630,941 (+)RGD
Celera2103,898,008 - 104,034,664 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001361018   ⟹   NP_001347947
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392102,489,034 - 102,608,451 (+)NCBI
GRCm382102,658,689 - 102,778,106 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011393   ⟹   NP_035523
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392102,536,783 - 102,608,451 (+)NCBI
GRCm382102,706,438 - 102,778,106 (+)NCBI
MGSCv372102,498,840 - 102,630,941 (+)RGD
Celera2103,898,008 - 104,034,664 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499047   ⟹   XP_006499110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392102,488,627 - 102,611,804 (+)NCBI
GRCm382102,658,560 - 102,781,459 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011239398   ⟹   XP_011237700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392102,489,030 - 102,621,124 (+)NCBI
GRCm382102,658,560 - 102,790,779 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248893   ⟹   XP_030104753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392102,535,341 - 102,621,124 (+)NCBI
GRCm382102,704,996 - 102,790,779 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248894   ⟹   XP_030104754
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392102,488,584 - 102,621,124 (+)NCBI
GRCm382102,658,239 - 102,790,779 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001070982 (Get FASTA)   NCBI Sequence Viewer  
  NP_001070983 (Get FASTA)   NCBI Sequence Viewer  
  NP_001347947 (Get FASTA)   NCBI Sequence Viewer  
  NP_035523 (Get FASTA)   NCBI Sequence Viewer  
  XP_006499110 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237700 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104753 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104754 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA77673 (Get FASTA)   NCBI Sequence Viewer  
  AAA91643 (Get FASTA)   NCBI Sequence Viewer  
  AAB71737 (Get FASTA)   NCBI Sequence Viewer  
  AAB71738 (Get FASTA)   NCBI Sequence Viewer  
  AAI38256 (Get FASTA)   NCBI Sequence Viewer  
  AAI38257 (Get FASTA)   NCBI Sequence Viewer  
  AAM91019 (Get FASTA)   NCBI Sequence Viewer  
  AAM91022 (Get FASTA)   NCBI Sequence Viewer  
  AHJ80787 (Get FASTA)   NCBI Sequence Viewer  
  BAA07854 (Get FASTA)   NCBI Sequence Viewer  
  BAA23770 (Get FASTA)   NCBI Sequence Viewer  
  BAA23771 (Get FASTA)   NCBI Sequence Viewer  
  BAA23772 (Get FASTA)   NCBI Sequence Viewer  
  BAE22206 (Get FASTA)   NCBI Sequence Viewer  
  BAE24235 (Get FASTA)   NCBI Sequence Viewer  
  CAL69851 (Get FASTA)   NCBI Sequence Viewer  
  CAM27622 (Get FASTA)   NCBI Sequence Viewer  
  CAM27623 (Get FASTA)   NCBI Sequence Viewer  
  CAM27624 (Get FASTA)   NCBI Sequence Viewer  
  CAM27625 (Get FASTA)   NCBI Sequence Viewer  
  CAM27626 (Get FASTA)   NCBI Sequence Viewer  
  CAM27627 (Get FASTA)   NCBI Sequence Viewer  
  CAM27628 (Get FASTA)   NCBI Sequence Viewer  
  EDL27672 (Get FASTA)   NCBI Sequence Viewer  
  EDL27673 (Get FASTA)   NCBI Sequence Viewer  
  EDL27674 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000005220
  ENSMUSP00000005220.5
  ENSMUSP00000079100
  ENSMUSP00000079100.4
  ENSMUSP00000106843
  ENSMUSP00000106843.2
  ENSMUSP00000106844
  ENSMUSP00000106844.2
  ENSMUSP00000115129.2
  ENSMUSP00000117549.2
  ENSMUSP00000122094.2
GenBank Protein P43006 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001070982   ⟸   NM_001077514
- Peptide Label: isoform 1
- UniProtKB: O54686 (UniProtKB/Swiss-Prot),   O35877 (UniProtKB/Swiss-Prot),   O54687 (UniProtKB/Swiss-Prot),   P43006 (UniProtKB/Swiss-Prot),   Q3UYK6 (UniProtKB/TrEMBL),   Q3USU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_035523   ⟸   NM_011393
- Peptide Label: isoform 3
- UniProtKB: A2APL7 (UniProtKB/TrEMBL),   X2D841 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001070983   ⟸   NM_001077515
- Peptide Label: isoform 2
- UniProtKB: A2APL8 (UniProtKB/TrEMBL),   Q3USU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499110   ⟸   XM_006499047
- Peptide Label: isoform X2
- UniProtKB: X2D841 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237700   ⟸   XM_011239398
- Peptide Label: isoform X1
- UniProtKB: Q3USU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030104754   ⟸   XM_030248894
- Peptide Label: isoform X1
- UniProtKB: Q3USU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347947   ⟸   NM_001361018
- Peptide Label: isoform 4
- UniProtKB: A2APL5 (UniProtKB/TrEMBL),   X2D841 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030104753   ⟸   XM_030248893
- Peptide Label: isoform X1
- UniProtKB: Q3USU5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000106843   ⟸   ENSMUST00000111212
Ensembl Acc Id: ENSMUSP00000106844   ⟸   ENSMUST00000111213
Ensembl Acc Id: ENSMUSP00000117549   ⟸   ENSMUST00000154446
Ensembl Acc Id: ENSMUSP00000079100   ⟸   ENSMUST00000080210
Ensembl Acc Id: ENSMUSP00000115129   ⟸   ENSMUST00000123759
Ensembl Acc Id: ENSMUSP00000005220   ⟸   ENSMUST00000005220
Ensembl Acc Id: ENSMUSP00000122094   ⟸   ENSMUST00000136488

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P43006-F1-model_v2 AlphaFold P43006 1-572 view protein structure

Promoters
RGD ID:6832717
Promoter ID:MM_KWN:30751
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000111204,   ENSMUST00000111206,   ENSMUST00000111213,   OTTMUST00000035265,   OTTMUST00000035304,   OTTMUST00000035306,   OTTMUST00000035307
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362102,498,841 - 102,499,341 (+)MPROMDB
RGD ID:6832726
Promoter ID:MM_KWN:30753
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:NM_001077515,   NM_011393,   OTTMUST00000035310
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362102,546,601 - 102,547,101 (+)MPROMDB
RGD ID:6832718
Promoter ID:MM_KWN:30754
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000035308
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362102,558,831 - 102,559,331 (+)MPROMDB
RGD ID:6832721
Promoter ID:MM_KWN:30758
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000035309
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362102,600,281 - 102,600,781 (+)MPROMDB
RGD ID:6830726
Promoter ID:MM_KWN:30760
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC008LID.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362102,625,981 - 102,630,782 (+)MPROMDB
RGD ID:6878052
Promoter ID:EPDNEW_M2477
Type:initiation region
Name:Slc1a2_2
Description:Mus musculus solute carrier family 1 , member 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2478  EPDNEW_M2479  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382102,658,689 - 102,658,749EPDNEW
RGD ID:6878054
Promoter ID:EPDNEW_M2478
Type:multiple initiation site
Name:Slc1a2_1
Description:Mus musculus solute carrier family 1 , member 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2477  EPDNEW_M2479  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382102,659,225 - 102,659,285EPDNEW
RGD ID:6878056
Promoter ID:EPDNEW_M2479
Type:multiple initiation site
Name:Slc1a2_3
Description:Mus musculus solute carrier family 1 , member 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2477  EPDNEW_M2478  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382102,706,422 - 102,706,482EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101931 AgrOrtholog
Ensembl Genes ENSMUSG00000005089 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000005220 ENTREZGENE
  ENSMUST00000005220.11 UniProtKB/Swiss-Prot
  ENSMUST00000080210 ENTREZGENE
  ENSMUST00000080210.10 UniProtKB/Swiss-Prot
  ENSMUST00000111212 ENTREZGENE
  ENSMUST00000111212.8 UniProtKB/Swiss-Prot
  ENSMUST00000111213 ENTREZGENE
  ENSMUST00000111213.8 UniProtKB/TrEMBL
  ENSMUST00000123759.8 UniProtKB/TrEMBL
  ENSMUST00000136488.2 UniProtKB/TrEMBL
  ENSMUST00000154446.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3860.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DAACS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na-dicarboxylate_symporter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na-dicarboxylate_symporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na:dicarbo_symporter_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20511 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:101931 ENTREZGENE
NCBI Gene 20511 ENTREZGENE
PANTHER EXCITATORY AMINO ACID TRANSPORTER 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM/DICARBOXYLATE SYMPORTER-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SDF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc1a2 PhenoGen
PRINTS EDTRNSPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NA_DICARBOXYL_SYMP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA_DICARBOXYL_SYMP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF118215 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2APL5 ENTREZGENE, UniProtKB/TrEMBL
  A2APL7 ENTREZGENE, UniProtKB/TrEMBL
  A2APL8 ENTREZGENE, UniProtKB/TrEMBL
  A2AQI7_MOUSE UniProtKB/TrEMBL
  EAA2_MOUSE UniProtKB/Swiss-Prot
  F6ZRK3_MOUSE UniProtKB/TrEMBL
  F7CAM6_MOUSE UniProtKB/TrEMBL
  O35877 ENTREZGENE
  O54686 ENTREZGENE
  O54687 ENTREZGENE
  P43006 ENTREZGENE
  Q3USU5 ENTREZGENE, UniProtKB/TrEMBL
  Q3UYK6 ENTREZGENE, UniProtKB/TrEMBL
  X2D841 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary O35877 UniProtKB/Swiss-Prot
  O54686 UniProtKB/Swiss-Prot
  O54687 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Slc1a2  solute carrier family 1 (glial high affinity glutamate transporter), member 2  2900019G14Rik  RIKEN cDNA 2900019G14 gene  Data merged from RGD:1613113 737654 PROVISIONAL