Myog (myogenin) - Rat Genome Database

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Gene: Myog (myogenin) Mus musculus
Analyze
Symbol: Myog
Name: myogenin
RGD ID: 736713
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific; E-box binding activity; and chromatin DNA binding activity. Involved in several processes, including cellular response to estradiol stimulus; positive regulation of cell differentiation; and regulation of muscle adaptation. Acts upstream of or within several processes, including cellular response to lithium ion; cellular response to tumor necrosis factor; and skeletal muscle fiber development. Located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; genitourinary system; and musculature. Orthologous to human MYOG (myogenin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bHLHc; bHLHc3; my; MYF4; myo; MYOD1-related protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,217,742 - 134,220,286 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,217,727 - 134,220,286 (+)EnsemblGRCm39 Ensembl
GRCm381134,290,004 - 134,292,548 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,289,989 - 134,292,548 (+)EnsemblGRCm38mm10GRCm38
MGSCv371136,186,581 - 136,189,125 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361136,106,424 - 136,108,961 (+)NCBIMGSCv36mm8
Celera1136,900,556 - 136,903,100 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.18NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroperoxycyclophosphamide  (EXP)
5-azacytidine  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamiprid  (ISO)
alpha-naphthoflavone  (ISO)
alpha-Zearalanol  (ISO)
ammonium chloride  (ISO)
antimycin A  (EXP)
arecoline  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
boric acid  (ISO)
bupivacaine  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (ISO)
cannabidiol  (EXP,ISO)
Cannabidivarin  (EXP,ISO)
carmustine  (ISO)
CGP 52608  (ISO)
chromium atom  (ISO)
dexamethasone  (EXP)
diacetylmonoxime  (EXP)
dimethylarsinous acid  (EXP)
fulvestrant  (ISO)
indole-3-methanol  (ISO)
indoxyl sulfate  (EXP)
lead diacetate  (EXP)
lumiracoxib  (EXP)
methylmercury chloride  (EXP)
ML-7  (EXP)
Monobutylphthalate  (EXP)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-nitrosodiethylamine  (ISO)
nickel subsulfide  (ISO)
niclosamide  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
Ptaquiloside  (EXP)
resveratrol  (EXP,ISO)
salubrinal  (EXP)
SB 203580  (EXP)
sodium arsenite  (EXP)
sodium fluoride  (EXP)
spermine  (EXP)
tebuconazole  (ISO)
testosterone  (EXP,ISO)
theaflavin  (EXP)
titanium dioxide  (EXP)
toluene  (ISO)
triptonide  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
XL147  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cell differentiation  (IEA)
cellular response to estradiol stimulus  (IDA)
cellular response to growth factor stimulus  (IDA)
cellular response to lithium ion  (IDA)
cellular response to magnetism  (ISO)
cellular response to retinoic acid  (ISO)
cellular response to tumor necrosis factor  (IDA)
muscle cell differentiation  (IDA)
muscle organ development  (IGI)
myoblast differentiation  (ISO)
myotube differentiation  (IGI,ISO)
negative regulation of cell population proliferation  (IDA)
negative regulation of glycolytic process  (ISO)
ossification  (IMP)
positive regulation of DNA-templated transcription  (IDA)
positive regulation of muscle atrophy  (IMP)
positive regulation of myoblast differentiation  (IBA,IDA)
positive regulation of myotube differentiation  (IDA)
positive regulation of oxidative phosphorylation  (ISO)
positive regulation of skeletal muscle fiber development  (IBA,IMP)
positive regulation of transcription by RNA polymerase II  (IBA,IDA,IGI,IMP,ISO)
regulation of cell cycle  (IDA)
regulation of DNA-templated transcription  (IEA)
regulation of myoblast fusion  (IMP)
regulation of skeletal muscle satellite cell proliferation  (IMP)
response to denervation involved in regulation of muscle adaptation  (IDA)
response to electrical stimulus involved in regulation of muscle adaptation  (ISO)
response to gravity  (ISO)
response to muscle activity  (ISO)
response to muscle activity involved in regulation of muscle adaptation  (ISO)
skeletal muscle atrophy  (ISO)
skeletal muscle cell differentiation  (IBA)
skeletal muscle fiber development  (IMP)
skeletal muscle tissue development  (IDA,TAS)
skeletal muscle tissue regeneration  (ISO)
striated muscle atrophy  (IMP)

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IDA,ISO,TAS)
protein-DNA complex  (ISO)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Changes in the expression of mRNAs for myogenic factors and other muscle-specific proteins in experimental autoimmune myasthenia gravis. Asher O, etal., FEBS Lett. 1992 Mar 24;299(1):15-8.
2. Fenofibrate administration to arthritic rats increases adiponectin and leptin and prevents oxidative muscle wasting. Castillero E, etal., Endocr Connect. 2012 Jun 8;1(1):1-12. doi: 10.1530/EC-12-0003. Print 2012 Jul 1.
3. Time-based gene expression programme following diaphragm injury in a rat model. Mehiri SN, etal., Eur Respir J. 2005 Mar;25(3):422-30.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Satellite cell proliferation is reduced in muscles of obese Zucker rats but restored with loading. Peterson JM, etal., Am J Physiol Cell Physiol. 2008 Aug;295(2):C521-8. Epub 2008 May 28.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1311614   PMID:1321062   PMID:1324403   PMID:1324843   PMID:1361374   PMID:1374351   PMID:1429837   PMID:1525038   PMID:1618148   PMID:1652425   PMID:1668275   PMID:1794058  
PMID:1846704   PMID:1901785   PMID:1911647   PMID:1962752   PMID:2045411   PMID:2168405   PMID:2172083   PMID:2211821   PMID:2473006   PMID:2537150   PMID:2552320   PMID:7529678  
PMID:7532173   PMID:7588063   PMID:7588068   PMID:7589813   PMID:7600971   PMID:7651534   PMID:7720554   PMID:7720577   PMID:7720708   PMID:7729687   PMID:7787235   PMID:7789282  
PMID:7797078   PMID:7846037   PMID:7851652   PMID:7863329   PMID:7901737   PMID:7922315   PMID:7929574   PMID:7956819   PMID:7973707   PMID:8026334   PMID:8076526   PMID:8118099  
PMID:8120103   PMID:8136524   PMID:8162858   PMID:8187980   PMID:8284216   PMID:8293880   PMID:8294401   PMID:8383334   PMID:8384837   PMID:8391346   PMID:8391506   PMID:8391976  
PMID:8392225   PMID:8393145   PMID:8393146   PMID:8404540   PMID:8404542   PMID:8405673   PMID:8408200   PMID:8486351   PMID:8565825   PMID:8565855   PMID:8573720   PMID:8575308  
PMID:8587605   PMID:8627340   PMID:8631255   PMID:8631261   PMID:8681797   PMID:8760303   PMID:8797820   PMID:8811512   PMID:8812059   PMID:8853903   PMID:8854889   PMID:8950513  
PMID:8955271   PMID:8957005   PMID:9094721   PMID:9109488   PMID:9118475   PMID:9153393   PMID:9170103   PMID:9186058   PMID:9187078   PMID:9216993   PMID:9226440   PMID:9234731  
PMID:9242490   PMID:9264261   PMID:9268575   PMID:9268580   PMID:9284043   PMID:9284044   PMID:9342347   PMID:9359635   PMID:9428409   PMID:9438383   PMID:9600108   PMID:9609818  
PMID:9611134   PMID:9622634   PMID:9690472   PMID:9690473   PMID:9771705   PMID:9808779   PMID:9811581   PMID:9826681   PMID:9828134   PMID:9876177   PMID:9892671   PMID:9925645  
PMID:10037786   PMID:10075840   PMID:10208749   PMID:10226008   PMID:10364424   PMID:10439029   PMID:10449756   PMID:10556048   PMID:10559491   PMID:10572050   PMID:10590474   PMID:10603357  
PMID:10603359   PMID:10635459   PMID:10652346   PMID:10653966   PMID:10669094   PMID:10694423   PMID:10696067   PMID:10725239   PMID:10733231   PMID:10804169   PMID:10813634   PMID:10835421  
PMID:10879540   PMID:10898959   PMID:10906448   PMID:10929709   PMID:10973962   PMID:10974667   PMID:10985858   PMID:11076674   PMID:11134352   PMID:11169848   PMID:11201041   PMID:11313460  
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PMID:12798290   PMID:12861012   PMID:12871697   PMID:12915233   PMID:12925591   PMID:14499644   PMID:14517256   PMID:14643678   PMID:14678836   PMID:14732408   PMID:14734627   PMID:14762206  
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PMID:15385444   PMID:15386014   PMID:15489334   PMID:15520282   PMID:15525990   PMID:15530859   PMID:15546868   PMID:15572127   PMID:15572686   PMID:15604102   PMID:15618518   PMID:15634692  
PMID:15673614   PMID:15706034   PMID:15739233   PMID:15749074   PMID:15788460   PMID:15870273   PMID:15893969   PMID:15937819   PMID:15964993   PMID:16000382   PMID:16140986   PMID:16141072  
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PMID:19783738   PMID:19783823   PMID:19812254   PMID:19818710   PMID:19877283   PMID:19962975   PMID:20013826   PMID:20059953   PMID:20059958   PMID:20171203   PMID:20178747   PMID:20193675  
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PMID:20978076   PMID:21035439   PMID:21042574   PMID:21084569   PMID:21177767   PMID:21179410   PMID:21254332   PMID:21264243   PMID:21272575   PMID:21283718   PMID:21288905   PMID:21420400  
PMID:21422169   PMID:21465538   PMID:21478499   PMID:21498568   PMID:21543328   PMID:21683695   PMID:21701496   PMID:21730146   PMID:21782525   PMID:21873635   PMID:21884692   PMID:21985497  
PMID:21989910   PMID:21998026   PMID:22076929   PMID:22106411   PMID:22174917   PMID:22235349   PMID:22315423   PMID:22328527   PMID:22351927   PMID:22377357   PMID:22438570   PMID:22460713  
PMID:22513369   PMID:22522309   PMID:22638570   PMID:22710718   PMID:22736793   PMID:22847234   PMID:22859371   PMID:22940113   PMID:22988430   PMID:23092676   PMID:23149718   PMID:23211595  
PMID:23233679   PMID:23236180   PMID:23307821   PMID:23349075   PMID:23364797   PMID:23406902   PMID:23451037   PMID:23615282   PMID:23623977   PMID:23650549   PMID:23660517   PMID:23732671  
PMID:23765941   PMID:23815977   PMID:23868259   PMID:23907538   PMID:23926128   PMID:23946446   PMID:23968884   PMID:23987512   PMID:23993744   PMID:24009529   PMID:24019467   PMID:24043309  
PMID:24055173   PMID:24055422   PMID:24146773   PMID:24167636   PMID:24188104   PMID:24275324   PMID:24301466   PMID:24349514   PMID:24357723   PMID:24361185   PMID:24385428   PMID:24394376  
PMID:24440912   PMID:24449764   PMID:24532688   PMID:24656932   PMID:24703692   PMID:24727028   PMID:24742196   PMID:24844572   PMID:24871946   PMID:24912677   PMID:24924195   PMID:24927569  
PMID:24934157   PMID:25005473   PMID:25085416   PMID:25208565   PMID:25248974   PMID:25329411   PMID:25330622   PMID:25530839   PMID:25715398   PMID:25774500   PMID:25848030   PMID:26028225  
PMID:26042028   PMID:26074812   PMID:26114479   PMID:26237517   PMID:26275053   PMID:26387456   PMID:26395480   PMID:26430214   PMID:26462877   PMID:26483211   PMID:26563778   PMID:26586200  
PMID:26586428   PMID:26688546   PMID:26708556   PMID:26801181   PMID:26811377   PMID:26839363   PMID:27120339   PMID:27166947   PMID:27184118   PMID:27187787   PMID:27223325   PMID:27434733  
PMID:27578244   PMID:27680312   PMID:27743478   PMID:27780863   PMID:27798115   PMID:27899448   PMID:27906130   PMID:28130125   PMID:28166224   PMID:28228264   PMID:28334989   PMID:28438836  
PMID:28569755   PMID:28600496   PMID:28607928   PMID:28706950   PMID:28821740   PMID:28827394   PMID:28893950   PMID:28973166   PMID:28981706   PMID:29084951   PMID:29273440   PMID:29316425  
PMID:29449644   PMID:29543863   PMID:29555813   PMID:29768039   PMID:30081710   PMID:30121012   PMID:30237319   PMID:30254164   PMID:30389854   PMID:30548789   PMID:30622218   PMID:30683671  
PMID:30872276   PMID:30996264   PMID:31433978   PMID:31535973   PMID:31685980   PMID:31754141   PMID:31874220   PMID:31875546   PMID:32094117   PMID:32115872   PMID:32160556   PMID:32314958  
PMID:32479258   PMID:32520726   PMID:32555436   PMID:32591430   PMID:32768399   PMID:33201874   PMID:33298461   PMID:33465133   PMID:33525599   PMID:33527775   PMID:33602287   PMID:33712604  
PMID:33732701   PMID:34011940   PMID:34544261   PMID:34553752   PMID:34590686   PMID:35008534   PMID:35149920   PMID:35225230   PMID:35512705   PMID:35618666   PMID:35733999   PMID:35806430  
PMID:35874842   PMID:36196625   PMID:36388955   PMID:37174683   PMID:37246520   PMID:37267426   PMID:37468485   PMID:37524711   PMID:37681900   PMID:37723138   PMID:37756622   PMID:37779032  
PMID:37883229   PMID:38690566   PMID:38696583   PMID:38875306  


Genomics

Comparative Map Data
Myog
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,217,742 - 134,220,286 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,217,727 - 134,220,286 (+)EnsemblGRCm39 Ensembl
GRCm381134,290,004 - 134,292,548 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,289,989 - 134,292,548 (+)EnsemblGRCm38mm10GRCm38
MGSCv371136,186,581 - 136,189,125 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361136,106,424 - 136,108,961 (+)NCBIMGSCv36mm8
Celera1136,900,556 - 136,903,100 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.18NCBI
MYOG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,083,129 - 203,086,012 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,083,129 - 203,086,012 (-)EnsemblGRCh38hg38GRCh38
GRCh371203,052,257 - 203,055,140 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,318,880 - 201,322,000 (-)NCBINCBI36Build 36hg18NCBI36
Build 341199,783,916 - 199,786,823NCBI
Celera1176,181,515 - 176,184,632 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,217,862 - 174,220,769 (-)NCBIHuRef
CHM1_11204,474,600 - 204,477,509 (-)NCBICHM1_1
T2T-CHM13v2.01202,345,882 - 202,348,764 (-)NCBIT2T-CHM13v2.0
Myog
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,297,476 - 48,300,065 (+)NCBIGRCr8
mRatBN7.21345,745,455 - 45,748,044 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,745,436 - 45,748,039 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1348,353,288 - 48,355,876 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,641,358 - 49,643,946 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,906,096 - 46,908,691 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,126,459 - 51,129,048 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,126,459 - 51,129,048 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01356,182,747 - 56,185,336 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41347,243,712 - 47,246,301 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11347,257,754 - 47,260,344 (+)NCBI
Celera1346,073,572 - 46,076,161 (+)NCBICelera
Cytogenetic Map13q13NCBI
Myog
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,099,716 - 39,102,501 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,099,044 - 39,102,479 (-)NCBIChiLan1.0ChiLan1.0
MYOG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2146,291,785 - 46,299,091 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1146,258,868 - 46,263,290 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01178,684,933 - 178,687,971 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11182,979,700 - 182,982,607 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,979,700 - 182,982,611 (-)Ensemblpanpan1.1panPan2
MYOG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17112,116 - 114,604 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl7112,034 - 113,892 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha7167,989 - 170,338 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.07122,772 - 125,124 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl7122,763 - 125,152 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17111,008 - 113,379 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07220,521 - 222,887 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07243,050 - 245,421 (+)NCBIUU_Cfam_GSD_1.0
Myog
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,272,365 - 72,275,138 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365671,507,042 - 1,509,815 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365671,507,042 - 1,509,814 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9113,782,284 - 113,787,340 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19113,783,233 - 113,785,312 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29125,243,803 - 125,245,882 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap9q2.1-q2.6NCBI
MYOG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12526,264,872 - 26,269,652 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2526,266,717 - 26,268,867 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605527,042,619 - 27,045,566 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myog
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,749,852 - 7,753,336 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248077,742,926 - 7,753,149 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Myog
94 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:239
Count of miRNA genes:206
Interacting mature miRNAs:218
Transcripts:ENSMUST00000027730
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
27226714Metcl1_mmetatarsal-calcaneal length 1, 5 week (mouse)1121727729139727738Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112131005146131085Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
13524520Bodwtq1_mbody wweight QTL 1 (mouse)1131191160135621161Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110553179144553298Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
13513913Heal51_mwound healing/ regeneration 51 (mouse)1131780648135499606Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110553179144553298Mouse

Markers in Region
D1Mit140  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,289,365 - 134,289,505UniSTSGRCm38
MGSCv371136,185,942 - 136,186,082UniSTSGRCm37
Celera1136,899,912 - 136,900,057UniSTS
Cytogenetic Map1E4UniSTS
cM Map170.0UniSTS
Whitehead Genetic173.2UniSTS
Myog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371136,186,634 - 136,186,818UniSTSGRCm37
MGSCv371136,186,896 - 136,188,319UniSTSGRCm37
MGSCv371136,187,049 - 136,187,700UniSTSGRCm37
MGSCv371136,187,672 - 136,188,269UniSTSGRCm37
MGSCv371576,853,921 - 76,854,127UniSTSGRCm37
MGSCv371136,186,795 - 136,187,067UniSTSGRCm37
MGSCv371136,188,975 - 136,189,093UniSTSGRCm37
MGSCv371136,187,059 - 136,188,503UniSTSGRCm37
Celera1578,511,599 - 78,511,805UniSTS
Celera1136,900,770 - 136,901,042UniSTS
Celera1136,900,871 - 136,902,294UniSTS
Celera1136,901,034 - 136,902,478UniSTS
Celera1136,901,647 - 136,902,244UniSTS
Celera1136,901,024 - 136,901,675UniSTS
Celera1136,900,609 - 136,900,793UniSTS
Celera1136,902,950 - 136,903,068UniSTS
Cytogenetic Map1E4UniSTS
cM Map172.3UniSTS
cM Map172.3UniSTS
cM Map172.3UniSTS
cM Map172.3UniSTS
cM Map172.3UniSTS
cM Map1543.3UniSTS
cM Map172.3UniSTS
UniSTS:234220  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,290,092 - 134,290,418UniSTSGRCm38
MGSCv371136,186,669 - 136,186,995UniSTSGRCm37
Celera1136,900,644 - 136,900,970UniSTS
Cytogenetic Map1E4UniSTS
cM Map172.3UniSTS
PMC133893P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,290,197 - 134,291,126UniSTSGRCm38
MGSCv371136,186,774 - 136,187,703UniSTSGRCm37
Celera1136,900,749 - 136,901,678UniSTS
Cytogenetic Map1E4UniSTS
cM Map172.3UniSTS
PMC133998P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,291,099 - 134,292,015UniSTSGRCm38
MGSCv371136,187,676 - 136,188,592UniSTSGRCm37
Celera1136,901,651 - 136,902,567UniSTS
Cytogenetic Map1E4UniSTS
cM Map172.3UniSTS
PMC151607P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,292,011 - 134,292,328UniSTSGRCm38
MGSCv371136,188,588 - 136,188,905UniSTSGRCm37
Celera1136,902,563 - 136,902,880UniSTS
Cytogenetic Map1E4UniSTS
cM Map172.3UniSTS
PMC207566P7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,289,851 - 134,290,060UniSTSGRCm38
MGSCv371136,186,428 - 136,186,637UniSTSGRCm37
Celera1136,900,403 - 136,900,612UniSTS
Cytogenetic Map1E4UniSTS
cM Map172.3UniSTS
D0Nds1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,023,053 - 77,023,216UniSTSGRCm38
MGSCv371576,853,483 - 76,853,646UniSTSGRCm37
Celera1578,511,161 - 78,511,324UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map15D3UniSTS
cM MapUN UniSTS
cM Map15 UniSTS
cM Map172.3UniSTS
Myog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,290,472 - 134,291,123UniSTSGRCm38
MGSCv371136,187,049 - 136,187,700UniSTSGRCm37
Celera1136,901,024 - 136,901,675UniSTS
Cytogenetic Map1E4UniSTS
Myog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,290,482 - 134,291,926UniSTSGRCm38
MGSCv371136,187,059 - 136,188,503UniSTSGRCm37
Celera1136,901,034 - 136,902,478UniSTS
Cytogenetic Map1E4UniSTS
cM Map172.3UniSTS
Myog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,023,491 - 77,023,697UniSTSGRCm38
MGSCv371576,853,921 - 76,854,127UniSTSGRCm37
Celera1578,511,599 - 78,511,805UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map15D3UniSTS
cM Map172.3UniSTS
Myog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,290,319 - 134,291,742UniSTSGRCm38
MGSCv371136,186,896 - 136,188,319UniSTSGRCm37
Celera1136,900,871 - 136,902,294UniSTS
Cytogenetic Map1E4UniSTS
cM Map172.3UniSTS
Myog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,290,057 - 134,290,241UniSTSGRCm38
MGSCv371136,186,634 - 136,186,818UniSTSGRCm37
Celera1136,900,609 - 136,900,793UniSTS
Cytogenetic Map1E4UniSTS
cM Map172.3UniSTS
Myog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,292,398 - 134,292,516UniSTSGRCm38
MGSCv371136,188,975 - 136,189,093UniSTSGRCm37
Celera1136,902,950 - 136,903,068UniSTS
Cytogenetic Map1E4UniSTS
cM Map172.3UniSTS
Myog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1E4UniSTS
Myog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,290,218 - 134,290,490UniSTSGRCm38
MGSCv371136,186,795 - 136,187,067UniSTSGRCm37
Celera1136,900,770 - 136,901,042UniSTS
Cytogenetic Map1E4UniSTS
cM Map172.3UniSTS
Myog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,291,095 - 134,291,692UniSTSGRCm38
MGSCv371136,187,672 - 136,188,269UniSTSGRCm37
Celera1136,901,647 - 136,902,244UniSTS
Cytogenetic Map1E4UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB221643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB921553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB921554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB921555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB921556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB921557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ096370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D90156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC388421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC388422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M95800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X71910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000027730   ⟹   ENSMUSP00000027730
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1134,217,727 - 134,220,286 (+)Ensembl
GRCm38.p6 Ensembl1134,289,989 - 134,292,548 (+)Ensembl
RefSeq Acc Id: NM_031189   ⟹   NP_112466
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391134,217,742 - 134,220,286 (+)NCBI
GRCm381134,290,004 - 134,292,548 (+)ENTREZGENE
MGSCv371136,186,581 - 136,189,125 (+)RGD
Celera1136,900,556 - 136,903,100 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_112466   ⟸   NM_031189
- UniProtKB: P12979 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000027730   ⟸   ENSMUST00000027730
Protein Domains
bHLH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P12979-F1-model_v2 AlphaFold P12979 1-224 view protein structure

Promoters
RGD ID:6874998
Promoter ID:EPDNEW_M950
Type:multiple initiation site
Name:Myog_1
Description:Mus musculus myogenin , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381134,290,007 - 134,290,067EPDNEW
RGD ID:6818140
Promoter ID:MM_KWN:2144
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000027730
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361136,186,786 - 136,187,286 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97276 AgrOrtholog
Ensembl Genes ENSMUSG00000026459 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000027730 ENTREZGENE
  ENSMUST00000027730.6 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot
InterPro Basic UniProtKB/Swiss-Prot
  bHLH_dom UniProtKB/Swiss-Prot
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot
  Myogenic_factor UniProtKB/Swiss-Prot
KEGG Report mmu:17928 UniProtKB/Swiss-Prot
MGD MGI:97276 ENTREZGENE
NCBI Gene 17928 ENTREZGENE
PANTHER MYOGENIN UniProtKB/Swiss-Prot
  PTHR11534 UniProtKB/Swiss-Prot
Pfam Basic UniProtKB/Swiss-Prot
  HLH UniProtKB/Swiss-Prot
PhenoGen Myog PhenoGen
PROSITE BHLH UniProtKB/Swiss-Prot
SMART BASIC UniProtKB/Swiss-Prot
  HLH UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot
UniProt MYOG_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE