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Gene: Chp1 (calcineurin-like EF hand protein 1) Mus musculus

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Symbol:

Chp1

Name:

calcineurin-like EF hand protein 1

RGD ID:

736500

MGI Page

MGI

Description:

Enables sodium:proton antiporter activity. Predicted to be involved in several processes, including microtubule cytoskeleton organization; regulation of establishment of protein localization; and regulation of protein modification process. Part of transporter complex. Is active in membrane raft. Is expressed in genitourinary system. Human ortholog(s) of this gene implicated in spastic ataxia. Orthologous to human CHP1 (calcineurin like EF-hand protein 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

1500003O03Rik; AA960066; AI046351; Cahp; calcineurin B homologous protein 1; calcineurin B-like protein; calcineurin homologous protein; calcium binding protein P22; calcium-binding protein CHP; calcium-binding protein p22; Chp; EF-hand calcium-binding domain-containing protein p22; p24; RP23-22A15.1; sid 470; Sid4; Sid470p; v; vac

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CHP1 (calcineurin like EF-hand protein 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Chp1 (calcineurin-like EF-hand protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Chp1 (calcineurin like EF-hand protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CHP1 (calcineurin like EF-hand protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CHP1 (calcineurin like EF-hand protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Chp1 (calcineurin like EF-hand protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CHP1 (calcineurin like EF-hand protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CHP1 (calcineurin like EF-hand protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Chp1 (calcineurin like EF-hand protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Chp1 (calcineurin-like EF-hand protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CHP1 (calcineurin like EF-hand protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	chp1 (calcineurin-like EF-hand protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	chpf-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	chpf-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	elm	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	chp1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Related Pseudogenes:

Gm15364

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	119,378,172 - 119,417,505 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	119,378,178 - 119,417,508 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	119,547,707 - 119,587,024 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	119,547,697 - 119,587,027 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	119,373,443 - 119,412,760 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	119,239,155 - 119,278,461 (+)	NCBI		MGSCv36	mm8
Celera	2	120,700,969 - 120,740,985 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	59.97	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

mosaic variegated aneuploidy syndrome 1 (ISO)

Spastic Ataxia 9, Autosomal Recessive (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dinitrotoluene (ISO)

2-ethoxyethanol (ISO)

2-methoxyethanol (ISO)

4,4'-sulfonyldiphenol (EXP)

5-aza-2'-deoxycytidine (ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (ISO)

6-propyl-2-thiouracil (ISO)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

amiodarone (ISO)

ammonium chloride (ISO)

amphotericin B (ISO)

arsenite(3-) (ISO)

benzbromarone (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

Benzo[k]fluoranthene (EXP)

bisphenol A (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

carbon nanotube (EXP)

clofibrate (ISO)

clofibric acid (ISO)

cyclosporin A (ISO)

dextran sulfate (EXP)

dibutyl phthalate (EXP)

diquat (EXP)

diuron (ISO)

doxorubicin (ISO)

epoxiconazole (EXP)

ethanol (EXP)

Evodiamine (EXP)

folic acid (EXP)

FR900359 (ISO)

gentamycin (ISO)

isotretinoin (ISO)

ivermectin (ISO)

L-ethionine (ISO)

methotrexate (EXP)

methylmercury(1+) (ISO)

nickel atom (ISO)

omeprazole (ISO)

oxaliplatin (ISO)

paracetamol (ISO)

parathion (EXP)

perfluorooctane-1-sulfonic acid (EXP)

pirinixic acid (ISO)

resveratrol (EXP)

rotenone (ISO)

sodium dichromate (EXP)

sunitinib (ISO)

thioacetamide (ISO)

thiram (ISO)

topotecan (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (EXP)

urethane (ISO)

valproic acid (ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to acidic pH (ISS)

cytoplasmic microtubule organization (ISO,ISS)

membrane docking (IBA,ISO,ISS)

membrane fusion (ISO,ISS)

membrane organization (ISO,ISS)

microtubule bundle formation (ISO,ISS)

negative regulation of calcineurin-NFAT signaling cascade (IBA,ISO,ISS)

negative regulation of NF-kappaB transcription factor activity (ISO,ISS)

negative regulation of phosphatase activity (ISO,ISS)

negative regulation of protein autophosphorylation (ISO,ISS)

negative regulation of protein import into nucleus (ISO,ISS)

negative regulation of protein kinase activity (ISS)

negative regulation of protein phosphorylation (ISO,ISS)

negative regulation of protein ubiquitination (ISO,ISS)

positive regulation of phospholipid biosynthetic process (IEA,ISO)

positive regulation of protein glycosylation (ISO,ISS)

positive regulation of protein targeting to membrane (ISS)

positive regulation of protein transport (ISO,ISS)

positive regulation of sodium:proton antiporter activity (ISO,ISS)

protein complex oligomerization (ISO)

protein export from nucleus (ISO,ISS)

protein stabilization (ISO,ISS)

regulation of intracellular pH (ISO,ISS)

sodium ion transmembrane transport (IEA)

vesicle fusion (ISO)

vesicle targeting (ISO)

Cellular Component

cytoplasm (ISO,ISS)

endoplasmic reticulum (ISO,ISS)

endoplasmic reticulum-Golgi intermediate compartment (IEA)

Golgi membrane (ISO,ISS)

membrane raft (IPI)

microtubule cytoskeleton (ISO,ISS)

nucleus (ISO,ISS)

plasma membrane (IBA,ISO,ISS)

transport vesicle (ISO,ISS)

transporter complex (IDA,ISO)

Molecular Function

calcium ion binding (IBA,ISO,ISS)

calcium-dependent protein binding (ISO,ISS)

kinase binding (ISO,ISS)

microtubule binding (ISO,ISS)

protein binding (ISO)

protein kinase inhibitor activity (IEA)

sodium:proton antiporter activity (IMP,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Alzheimer's disease pathway (IEA)

amyotrophic lateral sclerosis pathway (IEA)

apoptotic cell death pathway (IEA)

B cell receptor signaling pathway (IEA)

glutamate signaling pathway (IEA)

long term potentiation (IEA)

mitogen activated protein kinase signaling pathway (IEA)

T cell receptor signaling pathway (IEA)

tuberculosis pathway (IEA)

vascular endothelial growth factor signaling pathway (IEA)

Wnt signaling pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal coat/ hair morphology (IEA)

abnormal embryo size (IEA)

abnormal Purkinje cell axon morphology (IAGP)

abnormal synaptic bouton morphology (IAGP)

ataxia (IAGP)

axon degeneration (IAGP)

axonal dystrophy (IAGP)

decreased mean corpuscular hemoglobin (IEA)

decreased mean corpuscular volume (IEA)

embryonic growth retardation (IEA)

embryonic lethality prior to tooth bud stage (IEA)

preweaning lethality, complete penetrance (IEA)

Purkinje cell degeneration (IAGP)

tremors (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:12477932	PMID:14610273	PMID:15489334	PMID:15782199	PMID:16083881	PMID:16141072	PMID:16141073
PMID:17082620	PMID:18287559	PMID:18799693	PMID:18815128	PMID:21873635	PMID:23904602	PMID:27113764	PMID:28378742	PMID:29961886	PMID:30418981	PMID:30550785	PMID:31607845
PMID:32325033	PMID:32554809	PMID:34108458	PMID:37839992	PMID:38355793

Genomics

Comparative Map Data

Chp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	119,378,172 - 119,417,505 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	119,378,178 - 119,417,508 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	119,547,707 - 119,587,024 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	119,547,697 - 119,587,027 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	119,373,443 - 119,412,760 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	119,239,155 - 119,278,461 (+)	NCBI		MGSCv36	mm8
Celera	2	120,700,969 - 120,740,985 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	59.97	NCBI

CHP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	41,231,268 - 41,281,887 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	41,230,839 - 41,281,887 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	41,523,466 - 41,574,085 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	39,310,729 - 39,361,377 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	39,310,728 - 39,361,373	NCBI
Celera	15	18,291,415 - 18,342,063 (+)	NCBI		Celera
Cytogenetic Map	15	q15.1	NCBI
HuRef	15	18,371,799 - 18,422,604 (+)	NCBI		HuRef
CHM1_1	15	41,641,426 - 41,692,297 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	39,037,454 - 39,088,066 (+)	NCBI		T2T-CHM13v2.0

Chp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	126,989,800 - 127,025,071 (+)	NCBI		GRCr8
mRatBN7.2	3	106,536,009 - 106,571,255 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	106,536,004 - 106,571,251 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	110,213,376 - 110,248,697 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	118,808,913 - 118,844,244 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	116,469,312 - 116,504,631 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	111,354,506 - 111,389,998 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	111,354,506 - 111,389,989 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	117,902,988 - 117,938,480 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	106,066,389 - 106,101,635 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	105,962,816 - 105,998,059 (+)	NCBI
Celera	3	105,447,792 - 105,483,065 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

Chp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	8,090,034 - 8,132,870 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	8,090,034 - 8,131,605 (+)	NCBI	ChiLan1.0	ChiLan1.0

CHP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	30,472,900 - 30,523,533 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	34,624,238 - 34,674,873 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	20,172,874 - 20,223,382 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	38,418,815 - 38,466,925 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	38,418,815 - 38,467,681 (+)	Ensembl	panpan1.1		panPan2

CHP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	8,304,939 - 8,352,833 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	8,305,007 - 8,350,904 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	8,363,447 - 8,409,616 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	8,438,344 - 8,484,537 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	8,438,397 - 8,486,280 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	8,359,874 - 8,408,027 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	8,467,375 - 8,515,299 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	8,598,734 - 8,645,069 (+)	NCBI		UU_Cfam_GSD_1.0

Chp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	86,763,916 - 86,812,248 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	4,611,252 - 4,660,359 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	4,611,980 - 4,660,320 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	130,073,928 - 130,112,751 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	130,073,919 - 130,112,461 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	145,221,139 - 145,259,701 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	41,734,698 - 41,785,273 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	41,733,063 - 41,785,586 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	99,207,184 - 99,258,544 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624804	8,431,996 - 8,474,458 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624804	8,431,999 - 8,474,458 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Chp1
2129 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1834
Count of miRNA genes:	654
Interacting mature miRNAs:	800
Transcripts:	ENSMUST00000014221, ENSMUST00000119172, ENSMUST00000132448, ENSMUST00000137585, ENSMUST00000154406
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301905	Lgth2_m	body length 2 (mouse)			Not determined		2	111173704	145173821	Mouse
1302033	Nsv1_m	Neuroadapted Sindbis viral RNA level 1 (mouse)			Not determined		2	111623386	145623526	Mouse
12904007	Cfq7_m	conditioned fear QTL 7 (mouse)					2	118356772	125048872	Mouse
13506762	Tbvq2_m	trabecular bone volume QTL 2 (mouse)					2	115430481	124741920	Mouse
13824983	Vclq1_m	curvilinear velocity QTL 1 (mouse)					2	61830344	136841920	Mouse
1301909	Smdq2_m	segregation of mitochondrial DNA QTL 2 (mouse)			Not determined		2	92778465	126778607	Mouse
11039520	Ltpr2h_m	Leishmania tropica response 2h (mouse)					2	112212746	146213005	Mouse
11039521	Ltpr2g_m	Leishmania tropica response 2g (mouse)					2	115212857	149212994	Mouse
12910799	Pwgrq2_m	pre-weaning growth rate QTL 2 (mouse)					2	118589253	160611165	Mouse
1302174	Dssc2_m	dextran sodium sulfate induced colitis QTL2 (mouse)			Not determined		2	24224632	148700377	Mouse
12910795	Pwbwq5_m	post-weaning body weight QTL 5 (mouse)					2	118589253	160611165	Mouse
11532731	Sluc31a_m	susceptibility to lung cancer 31a (mouse)					2	88015003	122015170	Mouse
27226761	Feml18_m	femur length 18, 16 week (mouse)					2	94230345	154241920	Mouse
12910812	Pwgrq1_m	pre-weaning growth rate QTL 1 (mouse)					2	118589253	160611165	Mouse
12910814	Pwbwq1_m	pre-weaning body weight QTL 1 (mouse)					2	118589253	160611165	Mouse
4141854	T2dm2sa_m	type 2 diabetes mellitus 2 in SMXA RI mice (mouse)			Not determined		2	29307947	148374934	Mouse
12904935	Edlmmq2_m	extensor digitorum longus muscle mass QTL 2 (mouse)					2	97210364	131210364	Mouse
1302071	Fembrs1_m	femur breaking strength 1 (mouse)			Not determined		2	100942930	134943090	Mouse
10045885	Cplaq15_m	circadian period of locomotor activity 15 (mouse)			Not determined		2	110916118	154354667	Mouse
1302203	Gvhd3_m	graft-versus host disease 3 (mouse)			Not determined		2	100942930	134943090	Mouse
1300793	Pcfm2_m	periosteal circumference and femur length 2 (mouse)			Not determined		2	111173704	145173821	Mouse
10412082	Hylaq1_m	Hyperlocomotor activity related QTL 1 (mouse)			Not determined		2	84013198	148667470	Mouse
1300798	Actre3_m	activity response to ethanol 3 (mouse)			Not determined		2	112024987	128173821	Mouse
5491197	Mobq5_m	multigenic obesity QTL 5 (mouse)			Not determined		2	65269746	162518926	Mouse
5491196	Mobq6_m	multigenic obesity QTL 6 (mouse)			Not determined		2	85724269	180896594	Mouse
4142223	Femwf4_m	femur work to failure 4 (mouse)			Not determined			88143423	122143570	Mouse
1301415	Actre4_m	activity response to ethanol 4 (mouse)			Not determined		2	112024987	128173821	Mouse
1301029	T2dm3_m	type 2 diabetes mellitus 3 (mouse)			Not determined		2	114288075	132714157	Mouse
27226788	Feml13_m	femur length 13, 10 week (mouse)					2	102630345	159941920	Mouse
1301295	Prdt1_m	prion disease incubation time 1 (mouse)			Not determined		2	116077623	150077741	Mouse
12904954	Gmmq2_m	gastrocnemius muscle mass QTL 2 (mouse)					2	97210364	131210364	Mouse
1558825	Aabpr_m	aberrant activation of B cell proliferation (mouse)			Not determined		2	116033229	122207534	Mouse
11038696	Ltpr2f_m	Leishmania tropica response 2f (mouse)					2	115212857	149212994	Mouse
11038697	Ltpr2d_m	Leishmania tropica response 2d (mouse)					2	86095716	120095823	Mouse
1301330	Tbbmd2_m	total body bone mineral density 2 (mouse)			Not determined		2	100942930	134943090	Mouse
11038698	Ltpr2c_m	Leishmania tropica response 2c (mouse)					2	86095716	120095823	Mouse
1301201	Chab1_m	cholesterol absorption 1 (mouse)			Not determined		2	111551028	145551163	Mouse
11038699	Ltpr2b_m	Leishmania tropica response 2b (mouse)					2	112212746	146213005	Mouse
11038700	Ltpr2a_m	Leishmania tropica response 2a (mouse)					2	112212746	146213005	Mouse
11038702	Ltpr2_m	Leishmania tropica response 2 (mouse)					2	103095716	167212356	Mouse
11049568	Lmr28c_m	leishmaniasis resistance 28c (mouse)					2	97123370	131123532	Mouse
11049569	Lmr28d_m	leishmaniasis resistance 28d (mouse)					2	97123370	131123532	Mouse
11528549	Sluc31_m	susceptibility to lung cancer 31 (mouse)					2	74524117	129213005	Mouse
1301087	Bbaa15_m	B.burgdorferi-associated arthritis 15 (mouse)			Not determined		2	110489658	144489807	Mouse
1301825	Pbrgcsf1_m	peripheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)			Not determined		2	106233580	140233729	Mouse
4141802	Ignpq1_m	IgA nephropathy QTL 1 (mouse)			Not determined		2	100824060	134824269	Mouse
1301834	Bits1_m	bitterness sensitivity 1 (mouse)			Not determined		2	87440643	121440778	Mouse
1558990	Skmw9_m	skeletal muscle weight 9 (mouse)			Not determined		2	111173704	145173821	Mouse
11041906	Lmr28a_m	leishmaniasis resistance 28a (mouse)					2	103095716	129213005	Mouse
4141155	Plast2b_m	plasma plant sterol 2b (mouse)			Not determined		2	84013198	148522175	Mouse
1301618	Bglu1_m	blood glucose level 1 (mouse)			Not determined		2	117942930	174324863	Mouse
1300852	Lmr14_m	leishmaniasis resistance 14 (mouse)			Not determined		2	86095716	120095823	Mouse
1301755	Hrq1_m	heart rate quantitative locus 1 (mouse)			Not determined		2	111173704	145173821	Mouse
1301344	Lith1_m	lithogenic gene 1 (mouse)			Not determined		2	45347635	145312647	Mouse
11049565	Lmr28g_m	leishmaniasis resistance 28g (mouse)					2	86095716	120095823	Mouse
1558881	Ses7_m	salmonella enteritidis susceptibility 7 (mouse)			Not determined		2	116306330	150306474	Mouse
1301098	Cd8mts3_m	CD8 memory T cell subset 3 (mouse)			Not determined		2	91089974	125090104	Mouse
10043875	Bw25_m	body weight QTL 25 (mouse)			Not determined		2	107255676	141255676	Mouse

Markers in Region

AI046351

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	119,586,587 - 119,586,729	UniSTS	GRCm38
GRCm38	16	32,410,664 - 32,410,806	UniSTS	GRCm38
MGSCv37	16	32,410,750 - 32,410,892	UniSTS	GRCm37
MGSCv37	2	119,412,323 - 119,412,465	UniSTS	GRCm37
Celera	16	32,894,928 - 32,895,070	UniSTS
Celera	2	120,740,547 - 120,740,689	UniSTS
Cytogenetic Map	2	E5	UniSTS
Whitehead/MRC_RH	16	319.38	UniSTS

38.MMHAP33FRE11.seq

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	119,581,688 - 119,581,838	UniSTS	GRCm38
MGSCv37	2	119,407,424 - 119,407,574	UniSTS	GRCm37
Celera	2	120,735,627 - 120,735,777	UniSTS
Cytogenetic Map	2	E5	UniSTS
Whitehead_YAC	2		UniSTS

D18051

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	119,586,904 - 119,587,009	UniSTS	GRCm38
MGSCv37	2	119,412,640 - 119,412,745	UniSTS	GRCm37
Celera	2	120,740,865 - 120,740,970	UniSTS
Cytogenetic Map	2	E5	UniSTS
Whitehead_YAC	2		UniSTS

AA960066

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	119,586,714 - 119,586,937	UniSTS	GRCm38
GRCm38	16	32,410,791 - 32,411,014	UniSTS	GRCm38
MGSCv37	16	32,410,877 - 32,411,100	UniSTS	GRCm37
MGSCv37	2	119,412,450 - 119,412,673	UniSTS	GRCm37
Celera	16	32,895,055 - 32,895,278	UniSTS
Celera	2	120,740,674 - 120,740,898	UniSTS
Cytogenetic Map	2	E5	UniSTS
Whitehead/MRC_RH	16	305.43	UniSTS

RH143965

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	16	32,408,960 - 32,409,237	UniSTS	GRCm38
GRCm38	2	119,584,609 - 119,585,341	UniSTS	GRCm38
MGSCv37	16	32,409,046 - 32,409,323	UniSTS	GRCm37
MGSCv37	2	119,410,345 - 119,411,077	UniSTS	GRCm37
Celera	16	32,893,406 - 32,893,683	UniSTS
Celera	2	120,738,633 - 120,739,365	UniSTS
Cytogenetic Map	2	E5	UniSTS
Cytogenetic Map	16	B3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036162411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB025217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK005067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK045920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK075723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK156588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK166219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK169146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK178002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK201141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK211672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK215164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL844536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC054733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC064784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY268484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000014221 ⟹ ENSMUSP00000014221

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	119,378,178 - 119,417,508 (+)	Ensembl
GRCm38.p6 Ensembl	2	119,547,697 - 119,587,027 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000119172 ⟹ ENSMUSP00000114013

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	119,378,202 - 119,417,496 (+)	Ensembl
GRCm38.p6 Ensembl	2	119,547,721 - 119,587,015 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000132448 ⟹ ENSMUSP00000122946

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	119,389,993 - 119,402,376 (+)	Ensembl
GRCm38.p6 Ensembl	2	119,559,512 - 119,571,895 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000137585

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	119,397,086 - 119,415,886 (+)	Ensembl
GRCm38.p6 Ensembl	2	119,566,605 - 119,585,405 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000154406

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	119,378,293 - 119,402,531 (+)	Ensembl
GRCm38.p6 Ensembl	2	119,547,812 - 119,572,050 (+)	Ensembl

RefSeq Acc Id:

NM_019769 ⟹ NP_062743

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	119,378,188 - 119,417,505 (+)	NCBI
GRCm38	2	119,547,707 - 119,587,024 (+)	ENTREZGENE
MGSCv37	2	119,373,443 - 119,412,760 (+)	RGD
Celera	2	120,700,969 - 120,740,985 (+)	RGD
cM Map	2		ENTREZGENE

Sequence:

show sequence

GCGCTCCACCCCTTGTTTCTCTCCCCGGGCCGCAAGAGAAACAGTGCCCTCTCCCTTCTTGACC
CCTGGCCCTTCCCTCCCTCCTTCCCTTCTGCCGCTGCTGCTTCTGGCGCTGCCGCTCCCGGAGG
AGCTCCCGTCACGGTGATGGGGTCTCGGGCCTCCACGTTATTGCGGGACGAAGAGCTCGAGGAG
ATCAAGAAGGAGACTGGCTTTTCCCACAGTCAGATCACGCGCCTGTACAGCCGCTTCACCAGCC
TGGACAAAGGGGAGAACGGGACTCTCAGCCGGGAAGATTTCCAGAGGATTCCAGAACTTGCCAT
CAACCCACTGGGGGACCGGATCATCAATGCCTTCTTCTCAGAGGGAGAGGATCAGGTAAACTTC
CGAGGATTCATGAGAACATTGGCTCATTTCCGACCCATTGAGGATAACGAAAAGAGCAAAGATG
TGAATGGCCCGGAACCCCTCAACAGCCGGAGCAACAAGCTGCACTTTGCTTTCAGACTCTATGA
TTTGGATAAAGATGACAAGATCTCCCGTGATGAGCTGTTACAGGTACTGCGAATGATGGTTGGA
GTGAATATCTCGGATGAGCAGCTGGGCAGTATTGCGGACAGGACCATCCAGGAGGCTGACCAAG
ATGGAGATAGTGCCATATCTTTTACAGAATTCGTTAAGGTTTTGGAAAAAGTGGATGTAGAACA
GAAGATGAGCATCCGATTTCTTCACTAAAGGGCAGAGACCAAATTATTCTTGCTTTCTAGTATT
TAAGAACTGAAACTTGTGTCCTCCAGCCCCACCCCATCCTGTCATCCCCTTTTCCCAGAATACT
ACAGCTCTTGCATGACAACCTGAAGTCTCTCCTGTCCATACAAACTTGCCTTTGGTGTATAAAC
AGGGCGTTACAGAATGGTACCCTCTGTCTGCTTCTGTTCAGTATCCACCCACCAGGTCCTTAGT
TGTCAGTACCATCTTCCCCTGTTAGCTGCTGAGTGCCATGCATCCATCCTGTCTGGGGAAATGA
ACCAGCCAGCAAAGCTCCCACTGGATGGGGACTATATCCATGCTGCCTTCCATCCCTGCATCGA
GCCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTGTCCTTGTGTCTGTTACTTCCTACCTCTC
AGTCATCCAACCTTCTCTCCATTCAGTTTTTCAGCTGCCCTCCTGTCGTTGAGATTCCCTGCAT
TTTACTTGATTCTGGGCTCTGGGCTCTGCTGTTAAGCCTGTTTCTGATGTGGCAGGATAGTTAG
TGGTGTGGTGAGTTATAGCTACCTTCTAATGTGTCTCTGGGACGTTGCCTATCCAGGAGCTTTT
CAGCAAGCAGTACTGCTCTTGGAAGCATGTGACTCCCTTGGTCCCCTGTATTGCTCTGTTGTCG
AAGGGCTTATGAGCAGACATGTTCTTAAAAGGTGGTCATGGTGAGGCTTGTAGAGCCATGTTTC
CTAGGTGGCTTCCCAGGTCTCTCTACCTCTGACTTTTTATTTTCAAACATATTTATGTGGCTTT
TCTGGGTACAGTGTTGACATTCATTAGAAAATATTCTAATGCCTGCCAGTTTGCTTCTCTTTGG
AACATTGTCACCACCCAAGTGGCTCTTCTGACAATGTGGTAGAGGGCCTTCTTGTAGTTTTCTG
AACAAGGCTAGGCACCCTGGAGAGCTGGCCACATTTGCTCTACAGCATGGGTCATGCCTCAGTG
TTCTGTACACTGGAAGAGTCTTCACATTTCCAAACAGAAAGACTAGTGTTACAGAAGTGCCTGA
CTTATCTCAGTCCTAAAGAATTAGATTGTCCTCAGTGTCTTAAAGTTTCGCACAAAACTCTGAA
TGAATTTTATACTTGGCAAATTTTAATGCTGGACGATGTGCAGTCAGTTCATAGTCCTGGTCCA
GGCCTTTAGTGTATTGTCTCATGAGCCTCCTGATGGCGTGACCTTCCTAGCTCCCTGTGTATAC
TACGCAGATCCCATAGAAGCATGGGGCCAAGGATTGGTGGCACCAACTGAGGTGACATTTAGAG
GTCTTTGAGTGACCCAGCTCAACTTCTCTGCCAATGTCAGCTTGATTTAGATCTCACTGAATCA
GGCTGCTTCTGTCCTGTGTCCCTGTGAATCTGCTCTTGGCTGGCTTTCTCTGATGTCGCTTCCT
TGCTTGCTTGCTTCGTTGCTTTGGAAGGCTATCCAAGGTGTGTAAACAATTCTTTAGTAAATAA
ATTGCTATTAACCCAAACAAACAAAAACACTGCAAAGAGGATGGGTAAAGGTGAGCAACAGGGG
AATGGCTGGGATAGATGGCTGGGGCTACATGAACTGGGGATTCTTTACGAAATATCTGTTAGAC
TTTGTGATCAAATGATGTGATAAAAGAATTGTATAAAGGGAATAATTGTCTGATACTGATCTGT
TTGAGAAGTATTGAGAAGCTTCTCAATTTAAATATTTAAACTTTCTAAGCTTATGCCCCCTTGG
CTGTGTATAGCAAACTGTTTTTATCCACAGTTGTGCCTTATTGTCCCATTAAAGTTGTATTCCT
CAATTCATCAATAAATCAATTGTTGTTAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

hide sequence

RefSeq Acc Id:

XM_036162411 ⟹ XP_036018304

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	119,378,172 - 119,417,505 (+)	NCBI

Sequence:

show sequence

CGGGCCGCCCTCCCCCGCGCTCCACCCCTTGTTTCTCTCCCCGGGCCGCAAGAGAAACAGTGCC
CTCTCCCTTCTTGACCCCTGGCCCTTCCCTCCCTCCTTCCCTTCTGCCGCTGCTGCTTCTGGCG
CTGCCGCTCCCGGAGGAGCTCCCGTCACGGTGATGGGGTCTCGGGCCTCCACGTTATTGCGGGA
CGAAGAGCTCGAGGAGATCAAGAAGGAGACTGGCTTTTCCCACAGTCAGATCACGCGCCTGTAC
AGCCGCTTCACCAGCCTGGACAAAGGGGAGAACGGGACTCTCAGAGAGGATCAGGTAAACTTCC
GAGGATTCATGAGAACATTGGCTCATTTCCGACCCATTGAGGATAACGAAAAGAGCAAAGATGT
GAATGGCCCGGAACCCCTCAACAGCCGGAGCAACAAGCTGCACTTTGCTTTCAGACTCTATGAT
TTGGATAAAGATGACAAGATCTCCCGTGATGAGCTGTTACAGGTACTGCGAATGATGGTTGGAG
TGAATATCTCGGATGAGCAGCTGGGCAGTATTGCGGACAGGACCATCCAGGAGGCTGACCAAGA
TGGAGATAGTGCCATATCTTTTACAGAATTCGTTAAGGTTTTGGAAAAAGTGGATGTAGAACAG
AAGATGAGCATCCGATTTCTTCACTAAAGGGCAGAGACCAAATTATTCTTGCTTTCTAGTATTT
AAGAACTGAAACTTGTGTCCTCCAGCCCCACCCCATCCTGTCATCCCCTTTTCCCAGAATACTA
CAGCTCTTGCATGACAACCTGAAGTCTCTCCTGTCCATACAAACTTGCCTTTGGTGTATAAACA
GGGCGTTACAGAATGGTACCCTCTGTCTGCTTCTGTTCAGTATCCACCCACCAGGTCCTTAGTT
GTCAGTACCATCTTCCCCTGTTAGCTGCTGAGTGCCATGCATCCATCCTGTCTGGGGAAATGAA
CCAGCCAGCAAAGCTCCCACTGGATGGGGACTATATCCATGCTGCCTTCCATCCCTGCATCGAG
CCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTGTCCTTGTGTCTGTTACTTCCTACCTCTCA
GTCATCCAACCTTCTCTCCATTCAGTTTTTCAGCTGCCCTCCTGTCGTTGAGATTCCCTGCATT
TTACTTGATTCTGGGCTCTGGGCTCTGCTGTTAAGCCTGTTTCTGATGTGGCAGGATAGTTAGT
GGTGTGGTGAGTTATAGCTACCTTCTAATGTGTCTCTGGGACGTTGCCTATCCAGGAGCTTTTC
AGCAAGCAGTACTGCTCTTGGAAGCATGTGACTCCCTTGGTCCCCTGTATTGCTCTGTTGTCGA
AGGGCTTATGAGCAGACATGTTCTTAAAAGGTGGTCATGGTGAGGCTTGTAGAGCCATGTTTCC
TAGGTGGCTTCCCAGGTCTCTCTACCTCTGACTTTTTATTTTCAAACATATTTATGTGGCTTTT
CTGGGTACAGTGTTGACATTCATTAGAAAATATTCTAATGCCTGCCAGTTTGCTTCTCTTTGGA
ACATTGTCACCACCCAAGTGGCTCTTCTGACAATGTGGTAGAGGGCCTTCTTGTAGTTTTCTGA
ACAAGGCTAGGCACCCTGGAGAGCTGGCCACATTTGCTCTACAGCATGGGTCATGCCTCAGTGT
TCTGTACACTGGAAGAGTCTTCACATTTCCAAACAGAAAGACTAGTGTTACAGAAGTGCCTGAC
TTATCTCAGTCCTAAAGAATTAGATTGTCCTCAGTGTCTTAAAGTTTCGCACAAAACTCTGAAT
GAATTTTATACTTGGCAAATTTTAATGCTGGACGATGTGCAGTCAGTTCATAGTCCTGGTCCAG
GCCTTTAGTGTATTGTCTCATGAGCCTCCTGATGGCGTGACCTTCCTAGCTCCCTGTGTATACT
ACGCAGATCCCATAGAAGCATGGGGCCAAGGATTGGTGGCACCAACTGAGGTGACATTTAGAGG
TCTTTGAGTGACCCAGCTCAACTTCTCTGCCAATGTCAGCTTGATTTAGATCTCACTGAATCAG
GCTGCTTCTGTCCTGTGTCCCTGTGAATCTGCTCTTGGCTGGCTTTCTCTGATGTCGCTTCCTT
GCTTGCTTGCTTCGTTGCTTTGGAAGGCTATCCAAGGTGTGTAAACAATTCTTTAGTAAATAAA
TTGCTATTAACCCAAACAAACAAAAACACTGCAAAGAGGATGGGTAAAGGTGAGCAACAGGGGA
ATGGCTGGGATAGATGGCTGGGGCTACATGAACTGGGGATTCTTTACGAAATATCTGTTAGACT
TTGTGATCAAATGATGTGATAAAAGAATTGTATAAAGGGAATAATTGTCTGATACTGATCTGTT
TGAGAAGTATTGAGAAGCTTCTCAATTTAAATATTTAAACTTTCTAAGCTTATGCCCCCTTGGC
TGTGTATAGCAAACTGTTTTTATCCACAGTTGTGCCTTATTGTCCCATTAAAGTTGTATTCCTC
AATTCATCAATAAATCAATTGTTGTTAAAACAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_062743	(Get FASTA)	NCBI Sequence Viewer
	XP_036018304	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH54733	(Get FASTA)	NCBI Sequence Viewer
	AAH64784	(Get FASTA)	NCBI Sequence Viewer
	BAA84688	(Get FASTA)	NCBI Sequence Viewer
	BAB23791	(Get FASTA)	NCBI Sequence Viewer
	BAC32532	(Get FASTA)	NCBI Sequence Viewer
	BAE33769	(Get FASTA)	NCBI Sequence Viewer
	BAE38637	(Get FASTA)	NCBI Sequence Viewer
	BAE39314	(Get FASTA)	NCBI Sequence Viewer
	BAE39762	(Get FASTA)	NCBI Sequence Viewer
	BAE40230	(Get FASTA)	NCBI Sequence Viewer
	BAE40925	(Get FASTA)	NCBI Sequence Viewer
	EDL27959	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000014221
	ENSMUSP00000014221.7
GenBank Protein	P61022	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_062743 ⟸ NM_019769
- UniProtKB:	Q62877 (UniProtKB/Swiss-Prot), Q6ZWQ8 (UniProtKB/Swiss-Prot), P61022 (UniProtKB/Swiss-Prot), B0R091 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGD RIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDD KISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIR FLH hide sequence

Ensembl Acc Id:

ENSMUSP00000114013 ⟸ ENSMUST00000119172

Ensembl Acc Id:

ENSMUSP00000122946 ⟸ ENSMUST00000132448

Ensembl Acc Id:

ENSMUSP00000014221 ⟸ ENSMUST00000014221

RefSeq Acc Id:	XP_036018304 ⟸ XM_036162411
- Peptide Label:	isoform X1

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P61022-F1-model_v2	AlphaFold	P61022	1-195	view protein structure

Promoters

RGD ID:

6832431

Promoter ID:

MM_KWN:31242

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

OTTMUST00000037896, OTTMUST00000037900, OTTMUST00000037912, OTTMUST00000037913, UC008LTV.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	119,372,851 - 119,374,002 (+)	MPROMDB

RGD ID:

6832423

Promoter ID:

MM_KWN:31243

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Lung

Transcripts:

OTTMUST00000037898

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	119,384,616 - 119,385,116 (+)	MPROMDB

RGD ID:

6832425

Promoter ID:

MM_KWN:31244

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Liver

Transcripts:

OTTMUST00000037899

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	119,391,941 - 119,392,441 (+)	MPROMDB

RGD ID:

6878362

Promoter ID:

EPDNEW_M2632

Type:

initiation region

Name:

Chp1_1

Description:

Mus musculus calcineurin-like EF hand protein 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	119,547,793 - 119,547,853	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1927185	AgrOrtholog
Ensembl Genes	ENSMUSG00000014077	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000014221	ENTREZGENE
	ENSMUST00000014221.13	UniProtKB/Swiss-Prot
Gene3D-CATH	EF-hand	UniProtKB/Swiss-Prot
InterPro	Calcineurin_B_homologous	UniProtKB/Swiss-Prot
	EF-hand-dom_pair	UniProtKB/Swiss-Prot
	EF_Hand_1_Ca_BS	UniProtKB/Swiss-Prot
	EF_hand_dom	UniProtKB/Swiss-Prot
KEGG Report	mmu:56398	UniProtKB/Swiss-Prot
MGD	MGI:1927185	ENTREZGENE
NCBI Gene	56398	ENTREZGENE
PANTHER	EG:114D9.1 PROTEIN-RELATED	UniProtKB/Swiss-Prot
Pfam	EF-hand_7	UniProtKB/Swiss-Prot
PhenoGen	Chp1	PhenoGen
PROSITE	EF_HAND_1	UniProtKB/Swiss-Prot
	EF_HAND_2	UniProtKB/Swiss-Prot
SMART	EFh	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot
UniProt	B0R091	ENTREZGENE, UniProtKB/TrEMBL
	B0R092_MOUSE	UniProtKB/TrEMBL
	CHP1_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q62877	ENTREZGENE
	Q6ZWQ8	ENTREZGENE
UniProt Secondary	Q62877	UniProtKB/Swiss-Prot
	Q6ZWQ8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-11-27	Chp1	calcineurin-like EF hand protein 1	1500003O03Rik	RIKEN cDNA 1500003O03 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Mammalian Phenotype