Nlgn1 (neuroligin 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Nlgn1 (neuroligin 1) Mus musculus
Analyze
Symbol: Nlgn1
Name: neuroligin 1
RGD ID: 736454
MGI Page MGI
Description: Enables neurexin family protein binding activity. Involved in several processes, including positive regulation of transport; regulation of postsynapse organization; and synapse organization. Acts upstream of or within several processes, including positive regulation of synapse assembly; regulation of respiratory gaseous exchange by nervous system process; and synapse organization. Located in external side of plasma membrane and synapse. Part of receptor complex. Is active in glutamatergic synapse. Is expressed in blood vessel and brain. Used to study autism spectrum disorder. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human NLGN1 (neuroligin 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6330415N05Rik; BB179718; MGC107366; mKIAA1070; N; neuroligin-1; Nl; NL1; Nlg1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39325,475,972 - 26,387,504 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl325,480,379 - 26,386,609 (-)EnsemblGRCm39 Ensembl
GRCm38325,421,808 - 26,332,866 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl325,426,215 - 26,332,460 (-)EnsemblGRCm38mm10GRCm38
MGSCv37325,330,763 - 26,230,831 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36325,622,914 - 26,522,982 (-)NCBIMGSCv36mm8
Celera325,414,194 - 26,317,921 (-)NCBICelera
Cytogenetic Map3A3NCBI
cM Map310.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
AMPA glutamate receptor clustering  (IDA,IMP,ISO)
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  (IDA,ISO,ISS,NAS)
cell-cell adhesion involved in synapse maturation  (NAS)
cellular response to calcium ion  (ISO)
cytoskeletal matrix organization at active zone  (IMP,ISO)
establishment of protein localization  (IMP)
excitatory synapse assembly  (IDA,IMP)
heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  (IDA)
inhibitory postsynaptic potential  (IMP)
long-term synaptic potentiation  (ISO)
maintenance of synapse structure  (NAS)
modulation of chemical synaptic transmission  (IGI,ISO)
negative regulation of dendritic spine morphogenesis  (IMP,ISO)
nervous system development  (IDA,IMP,ISO)
neurexin clustering involved in presynaptic membrane assembly  (IDA)
neuron cell-cell adhesion  (IDA,ISO,NAS)
neuron projection arborization  (ISO)
neuron projection development  (ISO)
neuron projection morphogenesis  (NAS)
NMDA glutamate receptor clustering  (ISO,ISS)
positive regulation of circadian sleep/wake cycle, wakefulness  (IMP)
positive regulation of dendritic spine development  (IMP,ISO,ISS)
positive regulation of excitatory postsynaptic potential  (IDA,IMP,ISO)
positive regulation of filopodium assembly  (ISO,ISS)
positive regulation of intracellular signal transduction  (ISO)
positive regulation of neuromuscular synaptic transmission  (NAS)
positive regulation of neuron projection development  (NAS)
positive regulation of presynaptic active zone assembly  (ISO)
positive regulation of protein localization to synapse  (ISO)
positive regulation of ruffle assembly  (ISO)
positive regulation of synapse assembly  (IDA,ISO,ISS)
positive regulation of synaptic transmission, GABAergic  (ISO,ISS)
positive regulation of synaptic transmission, glutamatergic  (ISO,ISS,NAS)
positive regulation of synaptic vesicle clustering  (IDA)
positive regulation of synaptic vesicle endocytosis  (IMP,ISO)
positive regulation of synaptic vesicle exocytosis  (IMP,ISO)
postsynaptic density protein 95 clustering  (IDA,ISO)
postsynaptic membrane assembly  (IDA)
postsynaptic specialization assembly  (IDA,IMP)
presynaptic membrane assembly  (IDA,ISO)
protein localization to synapse  (IDA)
protein targeting  (ISO)
receptor localization to synapse  (IDA)
regulation of AMPA receptor activity  (ISS)
regulation of neuron differentiation  (IDA)
regulation of NMDA receptor activity  (IDA,IMP,ISO)
regulation of postsynaptic density assembly  (IDA,IMP)
regulation of presynapse organization  (ISO)
regulation of respiratory gaseous exchange by nervous system process  (IGI)
retrograde trans-synaptic signaling by trans-synaptic protein complex  (ISO)
rhythmic process  (IEA)
synapse assembly  (IDA,ISO,NAS)
synapse maturation  (NAS)
synapse organization  (IGI,ISO)
synaptic membrane adhesion  (IDA,IMP)
synaptic vesicle clustering  (IDA,ISO)
synaptic vesicle targeting  (IMP)
synaptic vesicle transport  (ISO)
terminal button organization  (IMP,ISO)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Altered synaptic properties during integration of adult-born hippocampal neurons following a seizure insult. Jackson J, etal., PLoS One. 2012;7(4):e35557. doi: 10.1371/journal.pone.0035557. Epub 2012 Apr 23.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Transcellular neuroligin-2 interactions enhance insulin secretion and are integral to pancreatic beta cell function. Suckow AT, etal., J Biol Chem. 2012 Jun 8;287(24):19816-26. doi: 10.1074/jbc.M111.280537. Epub 2012 Apr 23.
Additional References at PubMed
PMID:10349636   PMID:10892652   PMID:11042159   PMID:11076861   PMID:11329178   PMID:12141453   PMID:12202822   PMID:12477932   PMID:12796785   PMID:15328020   PMID:15358863   PMID:15489334  
PMID:15620359   PMID:15681343   PMID:16141072   PMID:16141073   PMID:16186258   PMID:16242404   PMID:16602821   PMID:16794786   PMID:16846852   PMID:16919269   PMID:16982420   PMID:17360903  
PMID:17582332   PMID:17897391   PMID:18084303   PMID:18227507   PMID:18854036   PMID:19098102   PMID:19437420   PMID:19628693   PMID:19816407   PMID:19889999   PMID:19926856   PMID:19932134  
PMID:20147539   PMID:20176955   PMID:20534458   PMID:20573900   PMID:20869594   PMID:21267068   PMID:21356198   PMID:21788371   PMID:21873635   PMID:21940442   PMID:21953696   PMID:22542674  
PMID:22860111   PMID:22960622   PMID:22983708   PMID:23083741   PMID:23090496   PMID:23110172   PMID:23143522   PMID:23172145   PMID:23226954   PMID:23269831   PMID:23358245   PMID:23559421  
PMID:23716671   PMID:23719805   PMID:23791195   PMID:24083347   PMID:24336150   PMID:24441681   PMID:24448406   PMID:24613359   PMID:24860089   PMID:25149987   PMID:25592157   PMID:25595979  
PMID:25713840   PMID:25839034   PMID:26078884   PMID:26209464   PMID:26291161   PMID:26403076   PMID:26440732   PMID:26678009   PMID:26771491   PMID:26880202   PMID:26979420   PMID:27217145  
PMID:27473321   PMID:27581450   PMID:27779093   PMID:28194405   PMID:28283575   PMID:28297673   PMID:28607166   PMID:28706196   PMID:28841651   PMID:28864826   PMID:28939043   PMID:29100073  
PMID:29278843   PMID:29504935   PMID:29724786   PMID:29742426   PMID:30046996   PMID:30049666   PMID:30056576   PMID:30201312   PMID:30266599   PMID:30266896   PMID:30871858   PMID:31138690  
PMID:31665629   PMID:31801062   PMID:32324534   PMID:32332783   PMID:32719346   PMID:32915137   PMID:32921313   PMID:32973045   PMID:34135003   PMID:34320240   PMID:34474245   PMID:34616037  
PMID:34690694   PMID:34848499   PMID:34882968   PMID:34919427   PMID:35053395   PMID:35704570   PMID:35992071   PMID:36007521   PMID:37293130   PMID:37524711   PMID:37865312   PMID:38187761  


Genomics

Comparative Map Data
Nlgn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39325,475,972 - 26,387,504 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl325,480,379 - 26,386,609 (-)EnsemblGRCm39 Ensembl
GRCm38325,421,808 - 26,332,866 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl325,426,215 - 26,332,460 (-)EnsemblGRCm38mm10GRCm38
MGSCv37325,330,763 - 26,230,831 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36325,622,914 - 26,522,982 (-)NCBIMGSCv36mm8
Celera325,414,194 - 26,317,921 (-)NCBICelera
Cytogenetic Map3A3NCBI
cM Map310.38NCBI
NLGN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383173,395,952 - 174,294,372 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3173,396,284 - 174,294,372 (+)EnsemblGRCh38hg38GRCh38
GRCh373173,113,742 - 174,012,162 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363174,598,938 - 175,483,810 (+)NCBINCBI36Build 36hg18NCBI36
Build 343174,598,945 - 175,483,818NCBI
Celera3171,515,223 - 172,400,529 (+)NCBICelera
Cytogenetic Map3q26.31NCBI
HuRef3170,489,300 - 171,374,847 (+)NCBIHuRef
CHM1_13173,079,120 - 173,964,074 (+)NCBICHM1_1
T2T-CHM13v2.03176,181,719 - 177,081,314 (+)NCBIT2T-CHM13v2.0
Nlgn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82110,184,987 - 111,110,316 (-)NCBIGRCr8
mRatBN7.22108,256,236 - 109,181,530 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2108,257,824 - 109,002,464 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2114,911,902 - 115,636,061 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02113,024,456 - 113,748,622 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02107,789,905 - 108,510,927 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02111,057,291 - 111,973,681 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2111,057,291 - 111,793,326 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02130,770,580 - 131,688,440 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42111,189,470 - 111,948,145 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12111,133,661 - 111,893,471 (-)NCBI
Celera2103,515,760 - 104,229,754 (-)NCBICelera
Cytogenetic Map2q24NCBI
Nlgn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554203,549,021 - 4,167,493 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554203,360,745 - 4,171,587 (+)NCBIChiLan1.0ChiLan1.0
NLGN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22171,247,516 - 172,162,746 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13171,252,234 - 172,164,121 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03170,416,885 - 171,333,094 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13178,595,014 - 179,505,810 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3178,810,253 - 179,503,756 (+)Ensemblpanpan1.1panPan2
NLGN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13437,397,772 - 38,203,634 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3437,572,629 - 38,203,177 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3446,409,660 - 47,225,945 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03437,484,369 - 38,313,800 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3437,659,077 - 38,308,775 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13437,576,956 - 38,230,342 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03437,390,518 - 38,201,245 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03437,647,698 - 38,463,980 (+)NCBIUU_Cfam_GSD_1.0
Nlgn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602104,390,734 - 105,051,988 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936703758,647 - 1,414,185 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936703951,935 - 1,415,991 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NLGN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13112,035,854 - 112,725,618 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113111,851,007 - 112,727,202 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213120,802,484 - 121,025,494 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NLGN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11515,129,976 - 16,017,107 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606323,867,631 - 24,767,924 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nlgn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473051,650,815 - 52,295,023 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473051,451,546 - 52,300,413 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nlgn1
48215 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1291
Count of miRNA genes:333
Interacting mature miRNAs:424
Transcripts:ENSMUST00000075054, ENSMUST00000108308
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32017486254180103Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
12904010Cfq8_mconditioned fear QTL 8 (mouse)32476823231332103Mouse
12798540Scvg2_msubcutaneous vessel growth QTL 2 (mouse)3744981526249645Mouse
25671383Hrsq1_mhost response to SARS QTL 1, vascular cuffing (mouse)31844095426823641Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1828816852288168Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
1301256Skmw1_mskeletal muscle weight 1 (mouse)Not determined3125786432Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3452541938525519Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse

Markers in Region
BB392043  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38325,433,312 - 25,433,434UniSTSGRCm38
MGSCv37325,332,234 - 25,332,356UniSTSGRCm37
Celera325,415,665 - 25,415,787UniSTS
Cytogenetic Map3A3UniSTS
Whitehead/MRC_RH3293.86UniSTS
BB391041  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38325,432,368 - 25,432,462UniSTSGRCm38
MGSCv37325,331,290 - 25,331,384UniSTSGRCm37
Celera325,414,721 - 25,414,815UniSTS
Cytogenetic Map3A3UniSTS
Whitehead/MRC_RH3295.99UniSTS
RH127137  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38325,668,920 - 25,669,138UniSTSGRCm38
MGSCv37325,567,842 - 25,568,060UniSTSGRCm37
Celera325,645,066 - 25,645,284UniSTS
Cytogenetic Map3A3UniSTS
Whitehead/MRC_RH3297.67UniSTS
BB179718  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38326,332,139 - 26,332,279UniSTSGRCm38
MGSCv37326,231,061 - 26,231,201UniSTSGRCm37
Celera326,318,151 - 26,318,291UniSTS
Cytogenetic Map3A3UniSTS
Whitehead/MRC_RH3303.7UniSTS
12.MMHAP85FRD9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38326,029,390 - 26,029,508UniSTSGRCm38
MGSCv37325,928,312 - 25,928,430UniSTSGRCm37
Celera326,012,267 - 26,012,385UniSTS
Cytogenetic Map3A3UniSTS
Whitehead_YAC3 UniSTS
15.MMHAP14FLE3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38325,873,602 - 25,873,751UniSTSGRCm38
MGSCv37325,772,524 - 25,772,673UniSTSGRCm37
Celera325,849,845 - 25,849,994UniSTS
Cytogenetic Map3A3UniSTS
Whitehead_YAC3 UniSTS
21.MMHAP50FRG9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38326,088,309 - 26,088,390UniSTSGRCm38
MGSCv37325,987,231 - 25,987,312UniSTSGRCm37
Celera326,071,749 - 26,071,830UniSTS
Celera326,071,163 - 26,071,830UniSTS
Cytogenetic Map3A3UniSTS
Whitehead_YAC3 UniSTS
D3Mit92  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38326,182,244 - 26,182,486UniSTSGRCm38
MGSCv37326,081,166 - 26,081,408UniSTSGRCm37
Celera326,168,761 - 26,168,997UniSTS
Cytogenetic Map3A3UniSTS
cM Map310.6UniSTS
Whitehead Genetic38.7UniSTS
D3Mit92.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38326,182,184 - 26,182,299UniSTSGRCm38
MGSCv37326,081,106 - 26,081,221UniSTSGRCm37
Celera326,168,701 - 26,168,816UniSTS
Cytogenetic Map3A3UniSTS
cM Map310.6UniSTS
cM Map3 UniSTS
Whitehead_YAC3 UniSTS
UniSTS:224698  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38325,511,553 - 25,511,741UniSTSGRCm38
MGSCv37325,410,475 - 25,410,663UniSTSGRCm37
Celera325,493,485 - 25,493,673UniSTS
Cytogenetic Map3A3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001163387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_138666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC100381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC107806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC108852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC109281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC123660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02003451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000075054   ⟹   ENSMUSP00000074565
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl325,485,975 - 26,187,883 (-)Ensembl
GRCm38.p6 Ensembl325,431,811 - 26,133,734 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108308   ⟹   ENSMUSP00000103944
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl325,485,975 - 26,187,883 (-)Ensembl
GRCm38.p6 Ensembl325,431,811 - 26,133,734 (-)Ensembl
Ensembl Acc Id: ENSMUST00000191835   ⟹   ENSMUSP00000142086
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl325,487,595 - 26,207,456 (-)Ensembl
GRCm38.p6 Ensembl325,433,431 - 26,153,307 (-)Ensembl
Ensembl Acc Id: ENSMUST00000192774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl326,185,819 - 26,386,019 (-)Ensembl
GRCm38.p6 Ensembl326,131,670 - 26,331,870 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193603   ⟹   ENSMUSP00000142200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl325,480,379 - 26,386,609 (-)Ensembl
GRCm38.p6 Ensembl325,426,215 - 26,332,460 (-)Ensembl
RefSeq Acc Id: NM_001163387   ⟹   NP_001156859
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,972 - 26,208,135 (-)NCBI
GRCm38325,421,808 - 26,153,986 (-)NCBI
MGSCv37325,330,763 - 26,230,831 (-)RGD
Celera325,414,194 - 26,317,921 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001357095   ⟹   NP_001344024
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,972 - 26,208,135 (-)NCBI
GRCm38325,421,808 - 26,153,986 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357096   ⟹   NP_001344025
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,972 - 26,208,135 (-)NCBI
GRCm38325,421,808 - 26,153,986 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357097   ⟹   NP_001344026
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,972 - 26,208,135 (-)NCBI
GRCm38325,421,808 - 26,153,986 (-)NCBI
Sequence:
RefSeq Acc Id: NM_138666   ⟹   NP_619607
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,972 - 26,386,058 (-)NCBI
GRCm38325,421,808 - 26,331,909 (-)NCBI
MGSCv37325,330,763 - 26,230,831 (-)RGD
Celera325,414,194 - 26,317,921 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006535415   ⟹   XP_006535478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,972 - 26,208,722 (-)NCBI
GRCm38325,421,808 - 26,154,573 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535416   ⟹   XP_006535479
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,972 - 26,196,783 (-)NCBI
GRCm38325,421,808 - 26,142,634 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535418   ⟹   XP_006535481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,387,015 (-)NCBI
GRCm38325,421,808 - 26,332,866 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535419   ⟹   XP_006535482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,972 - 26,189,624 (-)NCBI
GRCm38325,421,808 - 26,135,475 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535420   ⟹   XP_006535483
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,208,133 (-)NCBI
GRCm38325,421,808 - 26,154,002 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535421   ⟹   XP_006535484
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,387,015 (-)NCBI
GRCm38325,421,808 - 26,332,866 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535422   ⟹   XP_006535485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,387,015 (-)NCBI
GRCm38325,421,808 - 26,332,866 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535423   ⟹   XP_006535486
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,387,015 (-)NCBI
GRCm38325,421,808 - 26,332,866 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535424   ⟹   XP_006535487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,387,015 (-)NCBI
GRCm38325,421,808 - 26,332,866 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535425   ⟹   XP_006535488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,387,015 (-)NCBI
GRCm38325,421,808 - 26,332,866 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252466   ⟹   XP_030108326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,387,504 (-)NCBI
GRCm38325,421,808 - 26,331,076 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162946   ⟹   XP_036018839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,972 - 26,208,722 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162947   ⟹   XP_036018840
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,972 - 26,208,722 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162948   ⟹   XP_036018841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,387,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162949   ⟹   XP_036018842
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,208,133 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162950   ⟹   XP_036018843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,972 - 26,189,538 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162951   ⟹   XP_036018844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,387,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162952   ⟹   XP_036018845
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,387,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162953   ⟹   XP_036018846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,387,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162954   ⟹   XP_036018847
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,977 - 26,387,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162955   ⟹   XP_036018848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39325,475,972 - 26,188,201 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001156859 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344024 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344025 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344026 (Get FASTA)   NCBI Sequence Viewer  
  NP_619607 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535478 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535479 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535481 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535482 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535483 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535484 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535485 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535486 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535487 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535488 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108326 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018839 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018840 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018841 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018842 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018843 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018844 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018845 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018846 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018847 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018848 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH05523 (Get FASTA)   NCBI Sequence Viewer  
  AAH98461 (Get FASTA)   NCBI Sequence Viewer  
  BAC65715 (Get FASTA)   NCBI Sequence Viewer  
  BAE23583 (Get FASTA)   NCBI Sequence Viewer  
  BAE34679 (Get FASTA)   NCBI Sequence Viewer  
  BAE36885 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000074565
  ENSMUSP00000074565.5
  ENSMUSP00000103944.4
  ENSMUSP00000142086
  ENSMUSP00000142086.2
  ENSMUSP00000142200
  ENSMUSP00000142200.2
GenBank Protein Q99K10 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_619607   ⟸   NM_138666
- Peptide Label: isoform 1 precursor
- UniProtKB: Q99K10 (UniProtKB/Swiss-Prot),   Q4KMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001156859   ⟸   NM_001163387
- Peptide Label: isoform 2
- UniProtKB: E9QK34 (UniProtKB/TrEMBL),   Q4KMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535488   ⟸   XM_006535425
- Peptide Label: isoform X7
- UniProtKB: E9QK34 (UniProtKB/TrEMBL),   Q4KMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535487   ⟸   XM_006535424
- Peptide Label: isoform X6
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535486   ⟸   XM_006535423
- Peptide Label: isoform X5
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535485   ⟸   XM_006535422
- Peptide Label: isoform X4
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535484   ⟸   XM_006535421
- Peptide Label: isoform X2
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535481   ⟸   XM_006535418
- Peptide Label: isoform X1
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535478   ⟸   XM_006535415
- Peptide Label: isoform X1
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535483   ⟸   XM_006535420
- Peptide Label: isoform X1
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535479   ⟸   XM_006535416
- Peptide Label: isoform X1
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535482   ⟸   XM_006535419
- Peptide Label: isoform X1
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030108326   ⟸   XM_030252466
- Peptide Label: isoform X1
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344026   ⟸   NM_001357097
- Peptide Label: isoform 4
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344025   ⟸   NM_001357096
- Peptide Label: isoform 4
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344024   ⟸   NM_001357095
- Peptide Label: isoform 3
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000103944   ⟸   ENSMUST00000108308
Ensembl Acc Id: ENSMUSP00000142086   ⟸   ENSMUST00000191835
Ensembl Acc Id: ENSMUSP00000142200   ⟸   ENSMUST00000193603
Ensembl Acc Id: ENSMUSP00000074565   ⟸   ENSMUST00000075054
RefSeq Acc Id: XP_036018840   ⟸   XM_036162947
- Peptide Label: isoform X3
- UniProtKB: Q99K10 (UniProtKB/Swiss-Prot),   Q4KMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018839   ⟸   XM_036162946
- Peptide Label: isoform X2
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018843   ⟸   XM_036162950
- Peptide Label: isoform X3
- UniProtKB: Q99K10 (UniProtKB/Swiss-Prot),   Q4KMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018848   ⟸   XM_036162955
- Peptide Label: isoform X9
- UniProtKB: Q3UUP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018846   ⟸   XM_036162953
- Peptide Label: isoform X7
- UniProtKB: E9QK34 (UniProtKB/TrEMBL),   Q4KMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018844   ⟸   XM_036162951
- Peptide Label: isoform X6
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018841   ⟸   XM_036162948
- Peptide Label: isoform X4
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018847   ⟸   XM_036162954
- Peptide Label: isoform X8
- UniProtKB: Q4KMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018845   ⟸   XM_036162952
- Peptide Label: isoform X7
- UniProtKB: E9QK34 (UniProtKB/TrEMBL),   Q4KMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018842   ⟸   XM_036162949
- Peptide Label: isoform X3
- UniProtKB: Q99K10 (UniProtKB/Swiss-Prot),   Q4KMN5 (UniProtKB/TrEMBL)
Protein Domains
Carboxylesterase type B

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99K10-F1-model_v2 AlphaFold Q99K10 1-843 view protein structure

Promoters
RGD ID:6834156
Promoter ID:MM_KWN:33900
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000075054,   ENSMUST00000108308
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36326,032,426 - 26,032,926 (-)MPROMDB
RGD ID:6834158
Promoter ID:MM_KWN:33901
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_001163387
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36326,051,601 - 26,052,101 (-)MPROMDB
RGD ID:6880344
Promoter ID:EPDNEW_M3623
Type:single initiation site
Name:Nlgn1_2
Description:Mus musculus neuroligin 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3624  EPDNEW_M3625  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38326,153,252 - 26,153,312EPDNEW
RGD ID:6880346
Promoter ID:EPDNEW_M3624
Type:single initiation site
Name:Nlgn1_3
Description:Mus musculus neuroligin 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3623  EPDNEW_M3625  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38326,153,897 - 26,153,957EPDNEW
RGD ID:6834179
Promoter ID:MM_KWN:33902
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_138666,   UC008OTD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36326,230,326 - 26,230,826 (-)MPROMDB
RGD ID:6880348
Promoter ID:EPDNEW_M3625
Type:multiple initiation site
Name:Nlgn1_1
Description:Mus musculus neuroligin 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3623  EPDNEW_M3624  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38326,331,867 - 26,331,927EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2179435 AgrOrtholog
Ensembl Genes ENSMUSG00000063887 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000075054 ENTREZGENE
  ENSMUST00000075054.10 UniProtKB/Swiss-Prot
  ENSMUST00000108308.10 UniProtKB/TrEMBL
  ENSMUST00000191835 ENTREZGENE
  ENSMUST00000191835.2 UniProtKB/TrEMBL
  ENSMUST00000193603 ENTREZGENE
  ENSMUST00000193603.6 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CarbesteraseB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Carboxylesterase_B_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neuroligin/BSAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nlgn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:192167 UniProtKB/Swiss-Prot
MGD MGI:2179435 ENTREZGENE
NCBI Gene 192167 ENTREZGENE
PANTHER NEUROLIGIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam COesterase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nlgn1 PhenoGen
PRINTS NEUROLIGIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CARBOXYLESTERASE_B_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53474 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9QK34 ENTREZGENE, UniProtKB/TrEMBL
  NLGN1_MOUSE UniProtKB/Swiss-Prot
  Q3TRZ1_MOUSE UniProtKB/TrEMBL
  Q3TY84_MOUSE UniProtKB/TrEMBL
  Q3UUP2 ENTREZGENE, UniProtKB/TrEMBL
  Q4KMN5 ENTREZGENE, UniProtKB/TrEMBL
  Q99K10 ENTREZGENE