Slc3a2 (solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2) - Rat Genome Database

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Gene: Slc3a2 (solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2) Mus musculus
Analyze
Symbol: Slc3a2
Name: solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
RGD ID: 735717
MGI Page MGI
Description: Enables protein homodimerization activity. Involved in L-leucine transport. Located in apical pole of neuron and plasma membrane. Is active in synapse. Is expressed in several structures, including alimentary system; brain; eye; genitourinary system; and hemolymphoid system gland. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human SLC3A2 (solute carrier family 3 member 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4F2; 4F2 cell-surface antigen heavy chain; 4F2HC; AI314110; amino acid transporter heavy chain SLC3A2; antigen identified by monoclonal antibodies 4F2; Cd98; CD98 antigen; CD98 heavy chain; Ly-1; Ly-10; Ly-m1; Ly-m10; Ly10; Mdu1; Mgp-2h; Mgp-2hc; NACAE; solute carrier family 3 member 2; type II transmembrane protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,684,931 - 8,700,733 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,684,246 - 8,700,733 (-)EnsemblGRCm39 Ensembl
GRCm38198,706,882 - 8,723,369 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,706,882 - 8,723,369 (-)EnsemblGRCm38mm10GRCm38
MGSCv37198,781,372 - 8,797,859 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36198,773,927 - 8,780,919 (-)NCBIMGSCv36mm8
Celera198,465,148 - 8,481,790 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
2-tert-butylhydroquinone  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
amiodarone  (ISO)
andrographolide  (ISO)
antimycin A  (ISO)
apigenin  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP,ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
azoxystrobin  (ISO)
Bardoxolone methyl  (ISO)
beauvericin  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bicalutamide  (ISO)
bilirubin IXalpha  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
boron nitride  (ISO)
bosentan  (ISO)
butan-1-ol  (ISO)
butylated hydroxyanisole  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (EXP,ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
carmustine  (ISO)
celastrol  (ISO)
celecoxib  (ISO)
chloroacetaldehyde  (ISO)
chlorpromazine  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
chrysene  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
clofibrate  (EXP)
clofibric acid  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
curcumin  (EXP,ISO)
cycloheximide  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
deguelin  (ISO)
deoxynivalenol  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (ISO)
Dihydrocorynantheine  (ISO)
dimethylarsinous acid  (ISO)
dioxygen  (EXP,ISO)
diquat  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
enniatin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
fenofibrate  (ISO)
fenpyroximate  (ISO)
fipronil  (ISO)
fluoranthene  (EXP)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furfural  (ISO)
gamma-hexachlorocyclohexane  (ISO)
gamma-linolenic acid  (ISO)
gedunin  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glutathione  (ISO)
GSK-J4  (ISO)
Heptachlor epoxide  (EXP)
Hirsuteine  (ISO)
hydralazine  (ISO)
hydrogen chloride  (EXP)
hydrogen peroxide  (ISO)
ibuprofen  (ISO)
ifosfamide  (ISO)
indometacin  (ISO)
ionomycin  (ISO)
ivermectin  (ISO)
L-cystine  (EXP,ISO)
L-glutamic acid  (ISO)
L-leucine  (ISO)
L-methionine  (EXP)
lamivudine  (ISO)
lead diacetate  (EXP,ISO)
lead(0)  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
lithium chloride  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercaptoethanol  (ISO)
mercury atom  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
mercury(0)  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
motexafin gadolinium  (ISO)
N(4)-hydroxycytidine  (EXP)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-Nitrosopyrrolidine  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentachlorophenol  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phorone  (ISO)
phosgene  (EXP)
phytoestrogen  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
procyanidin B1  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
Rutecarpine  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
sevoflurane  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
sulfasalazine  (EXP)
sulforaphane  (ISO)
sulindac  (ISO)
sulindac sulfide  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thapsigargin  (ISO)
thifluzamide  (ISO)
thioacetamide  (ISO)
tioguanine  (ISO)
titanium dioxide  (EXP)
triadimefon  (ISO)
trichloroethene  (EXP,ISO)
triptonide  (EXP)
troglitazone  (EXP,ISO)
tunicamycin  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zearalenone  (ISO)
zidovudine  (ISO)
zinc acetate  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. CD147-CD98hc complex contributes to poor prognosis of non-small cell lung cancer patients through promoting cell proliferation via the PI3K/Akt signaling pathway. Fei F, etal., Ann Surg Oncol. 2014 Dec;21(13):4359-68. doi: 10.1245/s10434-014-3816-1. Epub 2014 Aug 2.
2. Genetic variations in SLC3A2/CD98 gene as prognosis predictors in non-small cell lung cancer. Guo X, etal., Mol Carcinog. 2015 Jun;54 Suppl 1:E52-60. doi: 10.1002/mc.22167. Epub 2014 Apr 30.
3. Relationship between LAT1 expression and response to platinum-based chemotherapy in non-small cell lung cancer patients with postoperative recurrence. Kaira K, etal., Anticancer Res. 2011 Nov;31(11):3775-82.
4. l-type amino acid transporter 1 and CD98 expression in primary and metastatic sites of human neoplasms. Kaira K, etal., Cancer Sci. 2008 Dec;99(12):2380-6. doi: 10.1111/j.1349-7006.2008.00969.x. Epub 2008 Nov 17.
5. Expression of amino acid transporter (LAT1 and 4F2hc) in pulmonary pleomorphic carcinoma. Kaira K, etal., Hum Pathol. 2019 Feb;84:142-149. doi: 10.1016/j.humpath.2018.09.020. Epub 2018 Oct 6.
6. Prognostic significance of L-type amino acid transporter 1 (LAT1) and 4F2 heavy chain (CD98) expression in stage I pulmonary adenocarcinoma. Kaira K, etal., Lung Cancer. 2009 Oct;66(1):120-6. doi: 10.1016/j.lungcan.2008.12.015. Epub 2009 Jan 26.
7. Clinicopathological significance of L-type amino acid transporter 1 (LAT1) expression in patients with adenoid cystic carcinoma. Kaira K, etal., Pathol Oncol Res. 2013 Oct;19(4):649-56. doi: 10.1007/s12253-013-9624-2. Epub 2013 Mar 21.
8. Ultrastructural immunohistochemical study of L-type amino acid transporter 1-4F2 heavy chain in tumor microvasculatures of N-butyl-N-(4-hydroxybutyl) nitrosamine (BBN) induced rat bladder carcinoma. Kume E, etal., Microscopy (Oxf). 2017 Jun 1;66(3):198-203. doi: 10.1093/jmicro/dfx008.
9. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
10. MGDs mouse GO annotations MGD data from the GO Consortium
11. MGD IEA MGD IEA
12. Expression of L-type amino acid transporter 1 (LAT1) and 4F2 heavy chain (4F2hc) in liver tumor lesions of rat models. Ohkame H, etal., J Surg Oncol. 2001 Dec;78(4):265-71; discussion 271-2. doi: 10.1002/jso.1165.
13. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
14. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
15. Mouse MP Annotation Import Pipeline RGD automated import pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Prognostic significance of amino-acid transporter expression (LAT1, ASCT2, and xCT) in surgically resected tongue cancer. Toyoda M, etal., Br J Cancer. 2014 May 13;110(10):2506-13. doi: 10.1038/bjc.2014.178. Epub 2014 Apr 24.
19. SLC3A2, antigen of mAb 3G9, promotes migration and invasion by upregulating of mucins in gastric cancer. Wang S, etal., Oncotarget. 2017 Jul 25;8(51):88586-88598. doi: 10.18632/oncotarget.19529. eCollection 2017 Oct 24.
Additional References at PubMed
PMID:1358795   PMID:1676980   PMID:1959604   PMID:1970801   PMID:2004789   PMID:2531187   PMID:2928113   PMID:3356451   PMID:3476959   PMID:6321791   PMID:6402449   PMID:6984005  
PMID:7719025   PMID:7894154   PMID:8358177   PMID:8499657   PMID:8554532   PMID:8589516   PMID:8611692   PMID:9027487   PMID:9341170   PMID:9501310   PMID:9730611   PMID:9763662  
PMID:9915839   PMID:10101682   PMID:10349636   PMID:10549128   PMID:10734121   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11167010   PMID:11217851   PMID:11751410   PMID:12477932  
PMID:12520002   PMID:12904583   PMID:12927796   PMID:14517553   PMID:14527684   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15522208   PMID:15625115   PMID:15713750   PMID:15782199  
PMID:15880135   PMID:16141072   PMID:16141073   PMID:16399997   PMID:16707844   PMID:17273864   PMID:17597067   PMID:17682053   PMID:17967808   PMID:18799693   PMID:19270713   PMID:19841087  
PMID:20522643   PMID:21266579   PMID:21267068   PMID:21490400   PMID:21670318   PMID:21677750   PMID:21711689   PMID:21873635   PMID:22457928   PMID:22499850   PMID:22588539   PMID:22624878  
PMID:22641098   PMID:22768207   PMID:22794259   PMID:23055941   PMID:23296466   PMID:24491544   PMID:24534009   PMID:25002078   PMID:25044020   PMID:25267066   PMID:26410627   PMID:26493331  
PMID:26836475   PMID:26945935   PMID:27113764   PMID:27687603   PMID:27908736   PMID:28012647   PMID:28320871   PMID:28378742   PMID:29141216   PMID:29906411   PMID:30068389   PMID:30451822  
PMID:30457570   PMID:30550785   PMID:30562941   PMID:30696773   PMID:30958588   PMID:31162944   PMID:31396687   PMID:31789450   PMID:32188932   PMID:32325033   PMID:32554809   PMID:33665549  
PMID:33907288   PMID:34709416   PMID:34759371   PMID:34995420   PMID:35057861   PMID:35293971   PMID:35923893   PMID:36114006   PMID:36293380   PMID:36367657   PMID:36417873   PMID:36572564  
PMID:36808153   PMID:37142655   PMID:37442135   PMID:37771765   PMID:37998373   PMID:38187761   PMID:38519468  


Genomics

Comparative Map Data
Slc3a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,684,931 - 8,700,733 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,684,246 - 8,700,733 (-)EnsemblGRCm39 Ensembl
GRCm38198,706,882 - 8,723,369 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,706,882 - 8,723,369 (-)EnsemblGRCm38mm10GRCm38
MGSCv37198,781,372 - 8,797,859 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36198,773,927 - 8,780,919 (-)NCBIMGSCv36mm8
Celera198,465,148 - 8,481,790 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.44NCBI
SLC3A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,856,109 - 62,888,860 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,856,004 - 62,888,880 (+)EnsemblGRCh38hg38GRCh38
GRCh371162,623,581 - 62,656,332 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,380,094 - 62,412,929 (+)NCBINCBI36Build 36hg18NCBI36
Build 341162,380,149 - 62,412,840NCBI
Celera1159,946,914 - 59,979,926 (+)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,952,521 - 58,985,401 (+)NCBIHuRef
CHM1_11162,506,504 - 62,539,366 (+)NCBICHM1_1
T2T-CHM13v2.01162,845,504 - 62,878,241 (+)NCBIT2T-CHM13v2.0
Slc3a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,033,601 - 215,048,064 (-)NCBIGRCr8
mRatBN7.21205,604,468 - 205,618,931 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1205,604,468 - 205,618,931 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,010,415 - 214,024,888 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,048,034 - 221,062,497 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01213,740,736 - 213,755,199 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,906,566 - 224,921,029 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,906,554 - 224,921,092 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,843,822 - 231,858,285 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,375,889 - 211,390,313 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,534,318 - 211,548,743 (-)NCBI
Celera1203,117,365 - 203,131,828 (-)NCBICelera
Cytogenetic Map1q43NCBI
Slc3a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599376,245 - 391,311 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955599376,133 - 391,434 (-)NCBIChiLan1.0ChiLan1.0
SLC3A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2964,081,951 - 64,111,370 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11165,123,352 - 65,156,538 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01158,212,395 - 58,241,686 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,565,664 - 61,594,579 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,565,680 - 61,594,579 (+)Ensemblpanpan1.1panPan2
SLC3A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,810,468 - 53,819,021 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,810,398 - 53,819,021 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,416,355 - 52,424,896 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01854,862,432 - 54,870,971 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1854,862,008 - 54,870,971 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,959,818 - 53,968,341 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01853,533,954 - 53,542,486 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,325,863 - 54,334,403 (-)NCBIUU_Cfam_GSD_1.0
Slc3a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,311,055 - 10,327,851 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936581424,801 - 441,592 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC3A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,892,089 - 8,919,072 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.128,892,071 - 8,919,070 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,245,279 - 8,273,049 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC3A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,011,351 - 11,050,494 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,008,120 - 11,050,298 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,363,791 - 108,393,242 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc3a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249261,301,584 - 1,315,707 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249261,301,866 - 1,314,598 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc3a2
561 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:655
Count of miRNA genes:243
Interacting mature miRNAs:277
Transcripts:ENSMUST00000010239, ENSMUST00000170157
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
25394536Skmw86_mskeletal muscle weight 86, TA (mouse)1950648178957825Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse

Markers in Region
X14309  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,707,573 - 8,707,714UniSTSGRCm38
MGSCv37198,782,063 - 8,782,204UniSTSGRCm37
Celera198,465,839 - 8,465,980UniSTS
Cytogenetic Map19AUniSTS
cM Map190.0UniSTS
Whitehead/MRC_RH1981.39UniSTS
AI314110  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,707,695 - 8,707,838UniSTSGRCm38
MGSCv37198,782,185 - 8,782,328UniSTSGRCm37
Celera198,465,961 - 8,466,104UniSTS
Cytogenetic Map19AUniSTS
cM Map190.0UniSTS
Whitehead/MRC_RH1981.95UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001161413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB023408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC025794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU054912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U25708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X14309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000010239   ⟹   ENSMUSP00000010239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,684,981 - 8,691,243 (-)Ensembl
GRCm38.p6 Ensembl198,707,617 - 8,713,879 (-)Ensembl
Ensembl Acc Id: ENSMUST00000170157   ⟹   ENSMUSP00000130194
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,684,246 - 8,700,733 (-)Ensembl
GRCm38.p6 Ensembl198,706,882 - 8,723,369 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205377   ⟹   ENSMUSP00000146080
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,686,672 - 8,690,719 (-)Ensembl
GRCm38.p6 Ensembl198,709,308 - 8,713,355 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205463   ⟹   ENSMUSP00000146036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,687,098 - 8,690,720 (-)Ensembl
GRCm38.p6 Ensembl198,709,734 - 8,713,356 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205538   ⟹   ENSMUSP00000145974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,690,784 - 8,691,547 (-)Ensembl
GRCm38.p6 Ensembl198,713,420 - 8,714,183 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206560   ⟹   ENSMUSP00000145809
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,690,773 - 8,691,460 (-)Ensembl
GRCm38.p6 Ensembl198,713,409 - 8,714,096 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206598   ⟹   ENSMUSP00000146016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,684,951 - 8,690,349 (-)Ensembl
GRCm38.p6 Ensembl198,707,587 - 8,712,985 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206797   ⟹   ENSMUSP00000145892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,687,130 - 8,691,797 (-)Ensembl
GRCm38.p6 Ensembl198,709,766 - 8,714,433 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,690,520 - 8,700,562 (-)Ensembl
GRCm38.p6 Ensembl198,713,156 - 8,723,198 (-)Ensembl
RefSeq Acc Id: NM_001161413   ⟹   NP_001154885
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39198,684,931 - 8,700,733 (-)NCBI
GRCm38198,706,882 - 8,723,369 (-)ENTREZGENE
MGSCv37198,781,372 - 8,797,859 (-)RGD
Celera198,465,148 - 8,481,790 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001410771   ⟹   NP_001397700
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39198,684,931 - 8,691,568 (-)NCBI
RefSeq Acc Id: NM_008577   ⟹   NP_032603
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39198,684,931 - 8,691,261 (-)NCBI
GRCm38198,706,882 - 8,713,897 (-)NCBI
MGSCv37198,781,372 - 8,797,859 (-)RGD
Celera198,465,148 - 8,481,790 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006526733   ⟹   XP_006526796
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39198,684,931 - 8,689,175 (-)NCBI
GRCm38198,707,567 - 8,710,295 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318078   ⟹   XP_017173567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39198,684,931 - 8,696,547 (-)NCBI
GRCm38198,707,567 - 8,716,764 (-)NCBI
Sequence:
RefSeq Acc Id: NP_032603   ⟸   NM_008577
- Peptide Label: isoform b
- UniProtKB: G3UWA6 (UniProtKB/Swiss-Prot),   Q54AH5 (UniProtKB/Swiss-Prot),   P10852 (UniProtKB/Swiss-Prot),   Q3TN39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001154885   ⟸   NM_001161413
- Peptide Label: isoform a
- UniProtKB: Q3TN39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006526796   ⟸   XM_006526733
- Peptide Label: isoform X2
- UniProtKB: A0A0U1RPK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173567   ⟸   XM_017318078
- Peptide Label: isoform X1
- UniProtKB: G3UWA6 (UniProtKB/Swiss-Prot),   Q54AH5 (UniProtKB/Swiss-Prot),   P10852 (UniProtKB/Swiss-Prot),   Q3TN39 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000130194   ⟸   ENSMUST00000170157
Ensembl Acc Id: ENSMUSP00000145892   ⟸   ENSMUST00000206797
Ensembl Acc Id: ENSMUSP00000146016   ⟸   ENSMUST00000206598
Ensembl Acc Id: ENSMUSP00000145809   ⟸   ENSMUST00000206560
Ensembl Acc Id: ENSMUSP00000146036   ⟸   ENSMUST00000205463
Ensembl Acc Id: ENSMUSP00000146080   ⟸   ENSMUST00000205377
Ensembl Acc Id: ENSMUSP00000145974   ⟸   ENSMUST00000205538
Ensembl Acc Id: ENSMUSP00000010239   ⟸   ENSMUST00000010239
RefSeq Acc Id: NP_001397700   ⟸   NM_001410771
- Peptide Label: isoform b
- UniProtKB: P10852 (UniProtKB/Swiss-Prot),   G3UWA6 (UniProtKB/Swiss-Prot),   Q54AH5 (UniProtKB/Swiss-Prot),   Q3TN39 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P10852-F1-model_v2 AlphaFold P10852 1-526 view protein structure

Promoters
RGD ID:13678792
Promoter ID:EPDNEW_M23545
Type:initiation region
Name:Slc3a2_1
Description:Mus musculus solute carrier family 3 , member 2 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38198,713,872 - 8,713,932EPDNEW
RGD ID:6847603
Promoter ID:MM_ACW:25995
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:SLC3A2.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36198,782,476 - 8,783,807 (-)MPROMDB
RGD ID:6847600
Promoter ID:MM_ACW:25996
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   MEF_B6
Transcripts:SLC3A2.JSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36198,784,316 - 8,785,417 (-)MPROMDB
RGD ID:6830422
Promoter ID:MM_KWN:26296
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_008577,   UC008GMH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36198,787,856 - 8,788,367 (-)MPROMDB
RGD ID:6829795
Promoter ID:MM_KWN:26297
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:LINCRNA_533,   NM_001161413,   UC008GMJ.1,   UC008GMK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36198,797,551 - 8,798,482 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96955 AgrOrtholog
Ensembl Genes ENSMUSG00000010095 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000010239 ENTREZGENE
  ENSMUST00000010239.6 UniProtKB/Swiss-Prot
  ENSMUST00000170157 ENTREZGENE
  ENSMUST00000170157.8 UniProtKB/Swiss-Prot
  ENSMUST00000206598 ENTREZGENE
Gene3D-CATH 2.60.40.1180 UniProtKB/Swiss-Prot
  Glycosidases UniProtKB/Swiss-Prot
InterPro Glyco_hydro_13_cat_dom UniProtKB/Swiss-Prot
  Glyco_hydro_b UniProtKB/Swiss-Prot
  Glycoside_hydrolase_SF UniProtKB/Swiss-Prot
  SLC3A2 UniProtKB/Swiss-Prot
  SLC3A2_N UniProtKB/Swiss-Prot
KEGG Report mmu:17254 UniProtKB/Swiss-Prot
MGD MGI:96955 ENTREZGENE
NCBI Gene 17254 ENTREZGENE
PANTHER 4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN UniProtKB/Swiss-Prot
  PTHR46673 UniProtKB/Swiss-Prot
Pfam Alpha-amylase UniProtKB/Swiss-Prot
  SLC3A2_N UniProtKB/Swiss-Prot
PhenoGen Slc3a2 PhenoGen
SMART Aamy UniProtKB/Swiss-Prot
Superfamily-SCOP Glycosyl hydrolase domain UniProtKB/Swiss-Prot
  SSF51445 UniProtKB/Swiss-Prot
UniProt 4F2_MOUSE UniProtKB/Swiss-Prot
  A0A0U1RP32_MOUSE UniProtKB/TrEMBL
  A0A0U1RP98_MOUSE UniProtKB/TrEMBL
  A0A0U1RPG5_MOUSE UniProtKB/TrEMBL
  A0A0U1RPK4 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RPL8_MOUSE UniProtKB/TrEMBL
  A0A0U1RPQ7_MOUSE UniProtKB/TrEMBL
  G3UWA6 ENTREZGENE
  P10852 ENTREZGENE
  Q3TIP1_MOUSE UniProtKB/TrEMBL
  Q3TN39 ENTREZGENE, UniProtKB/TrEMBL
  Q3U144_MOUSE UniProtKB/TrEMBL
  Q54AH5 ENTREZGENE
  Q60849_MOUSE UniProtKB/TrEMBL
  Q8BTJ9_MOUSE UniProtKB/TrEMBL
UniProt Secondary G3UWA6 UniProtKB/Swiss-Prot
  Q54AH5 UniProtKB/Swiss-Prot