Calm1 (calmodulin 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Calm1 (calmodulin 1) Mus musculus
Analyze
Symbol: Calm1
Name: calmodulin 1
RGD ID: 735370
MGI Page MGI
Description: Predicted to enable several functions, including calcium channel inhibitor activity; enzyme activator activity; and enzyme binding activity. Involved in presynaptic endocytosis. Acts upstream of or within G2/M transition of mitotic cell cycle. Located in myelin sheath and sperm midpiece. Part of voltage-gated potassium channel complex. Is active in calyx of Held. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in catecholaminergic polymorphic ventricular tachycardia 4 and long QT syndrome 14. Orthologous to human CALM1 (calmodulin 1).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AI256814; AI327027; AI461935; AL024000; Calm; Calm2; Calm3; calmodulin; calmodulin-1; CaM; Cam1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912100,165,694 - 100,176,083 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12100,165,694 - 100,176,073 (+)EnsemblGRCm39 Ensembl
GRCm3812100,199,435 - 100,209,824 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12100,199,435 - 100,209,814 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712101,437,751 - 101,448,016 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612100,600,591 - 100,610,856 (+)NCBIMGSCv36mm8
Celera12101,426,181 - 101,436,442 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1250.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-lipoic acid  (ISO)
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3-methylcholanthrene  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
alpha-pinene  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP,ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (ISO)
Brodifacoum  (ISO)
bucladesine  (ISO)
buspirone  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP)
caffeine  (EXP,ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
carbamazepine  (ISO)
casticin  (EXP)
chlordecone  (EXP)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
deguelin  (ISO)
dextran sulfate  (EXP)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dibutylstannane  (ISO)
diclofenac  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP,ISO)
etoposide  (ISO)
fenofibrate  (ISO)
fenvalerate  (EXP)
flutamide  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
hydrogen cyanide  (EXP)
hydrogen peroxide  (EXP,ISO)
inulin  (EXP)
lead(0)  (ISO)
leflunomide  (ISO)
limonene  (ISO)
lipoic acid  (ISO)
maneb  (EXP)
mastoparan  (ISO)
medroxyprogesterone acetate  (ISO)
melatonin  (EXP)
melittin  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
methylseleninic acid  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
nickel dichloride  (ISO)
nicotine  (EXP)
nitric oxide  (ISO)
ochratoxin A  (ISO)
okadaic acid  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phencyclidine  (ISO)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
Pirarubicin  (EXP)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
progesterone  (ISO)
pyrimidifen  (ISO)
raloxifene  (ISO)
retinyl acetate  (EXP)
rimonabant  (EXP)
rotenone  (ISO)
sarin  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
streptozocin  (EXP)
sulfadimethoxine  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP,ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
tributylstannane  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triphenylstannane  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vanadyl sulfate  (ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
autophagosome membrane docking  (ISO,ISS)
cellular response to interferon-beta  (ISO)
cellular response to type II interferon  (IEA,ISO)
detection of calcium ion  (ISO)
establishment of protein localization to membrane  (ISO)
establishment of protein localization to mitochondrial membrane  (ISO)
G2/M transition of mitotic cell cycle  (IDA)
mitochondrion-endoplasmic reticulum membrane tethering  (ISO)
negative regulation of high voltage-gated calcium channel activity  (IEA,ISO)
negative regulation of ryanodine-sensitive calcium-release channel activity  (ISO)
obsolete positive regulation of phosphoprotein phosphatase activity  (ISO)
obsolete positive regulation of protein dephosphorylation  (ISO)
organelle localization by membrane tethering  (ISO)
positive regulation of cyclic-nucleotide phosphodiesterase activity  (IEA,ISO)
positive regulation of nitric-oxide synthase activity  (ISO)
positive regulation of receptor signaling pathway via JAK-STAT  (ISO)
positive regulation of ryanodine-sensitive calcium-release channel activity  (IBA,IEA,ISO)
presynaptic endocytosis  (IDA,IMP,NAS)
regulation of cardiac muscle cell action potential  (IEA,ISO)
regulation of cardiac muscle contraction  (ISO)
regulation of cytokinesis  (IEA,ISO)
regulation of heart rate  (ISO)
regulation of high voltage-gated calcium channel activity  (ISO)
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  (ISO)
regulation of ryanodine-sensitive calcium-release channel activity  (ISO)
regulation of synaptic vesicle endocytosis  (ISO)
regulation of synaptic vesicle exocytosis  (ISO)
response to amphetamine  (ISO)
response to calcium ion  (ISO)
substantia nigra development  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adenosine monophosphate-activated protein kinase (AMPK) signaling pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway   (ISO)
Alzheimer's disease pathway  (IEA)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway   (ISO)
calcium/calcium-mediated signaling pathway   (ISO)
calcium/calmodulin dependent kinase 2 signaling pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
glioma pathway   (IEA)
glycogen degradation pathway  (ISO)
gonadotropin-releasing hormone signaling pathway  (IEA)
ibutilide pharmacodynamics pathway   (ISO)
insulin responsive facilitative sugar transporter mediated glucose transport pathway   (ISO)
insulin signaling pathway  (IEA)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
long term potentiation  (IEA)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
N-cadherin signaling pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
neurotrophic factor signaling pathway  (IEA)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway   (ISO)
p38 MAPK signaling pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
phosphatidylinositol 3-kinase signaling pathway  (IEA)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
tuberculosis pathway  (IEA)
type II interferon signaling pathway   (ISO)
vascular endothelial growth factor signaling pathway  (ISO)
verapamil pharmacodynamics pathway   (ISO)
visual phototransduction pathway  (IEA)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. Phosphorylase kinase: the complexity of its regulation is reflected in the complexity of its structure. Brushia RJ and Walsh DA, Front Biosci. 1999 Sep 15;4:D618-41.
3. Calmodulin: a prototypical calcium sensor. Chin D and Means AR, Trends Cell Biol. 2000 Aug;10(8):322-8.
4. Calcium signaling. Clapham DE, Cell. 2007 Dec 14;131(6):1047-58.
5. CaMKII regulation in information processing and storage. Coultrap SJ and Bayer KU, Trends Neurosci. 2012 Oct;35(10):607-18. doi: 10.1016/j.tins.2012.05.003. Epub 2012 Jun 19.
6. Calmodulin-dependent protein kinase kinase-beta is an alternative upstream kinase for AMP-activated protein kinase. Hawley SA, etal., Cell Metab. 2005 Jul;2(1):9-19.
7. Changing pattern of gene expression is associated with ventricular myocyte dysfunction and altered mechanisms of Ca2+ signalling in young type 2 Zucker diabetic fatty rat heart. Howarth FC, etal., Exp Physiol. 2011 Mar;96(3):325-37. Epub 2011 Jan 7.
8. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
9. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
10. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
11. MGDs mouse GO annotations MGD data from the GO Consortium
12. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
13. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
16. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
17. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. New therapeutic targets in cardiology: arrhythmias and Ca2+/calmodulin-dependent kinase II (CaMKII). Rokita AG and Anderson ME, Circulation. 2012 Oct 23;126(17):2125-39. doi: 10.1161/CIRCULATIONAHA.112.124990.
20. Immunostaining of calmodulin and aluminium in Alzheimer's disease-affected brains. Solomon B, etal., Brain Res Bull. 2001 May 15;55(2):253-6.
Additional References at PubMed
PMID:2072923   PMID:2469574   PMID:2551780   PMID:3138114   PMID:3384819   PMID:7671812   PMID:7828884   PMID:8631904   PMID:8889548   PMID:8900147   PMID:9144225   PMID:9242710  
PMID:9252405   PMID:9507200   PMID:10049721   PMID:10075657   PMID:10349636   PMID:10620513   PMID:10862698   PMID:10922068   PMID:10938081   PMID:11042159   PMID:11076861   PMID:11123943  
PMID:11180952   PMID:11526197   PMID:11808628   PMID:11955285   PMID:12051765   PMID:12058069   PMID:12106288   PMID:12223552   PMID:12370446   PMID:12477932   PMID:12520002   PMID:12960067  
PMID:14610273   PMID:14681479   PMID:15102471   PMID:15247222   PMID:15489334   PMID:15499021   PMID:15522783   PMID:15543153   PMID:15590632   PMID:15663482   PMID:15757646   PMID:15782199  
PMID:15890671   PMID:16055744   PMID:16084495   PMID:16141072   PMID:16141073   PMID:16256941   PMID:16258073   PMID:16310175   PMID:16479539   PMID:16602821   PMID:16627785   PMID:16837464  
PMID:17273929   PMID:17366632   PMID:17473172   PMID:17562702   PMID:17640527   PMID:17804406   PMID:17965257   PMID:18066127   PMID:18182391   PMID:18554416   PMID:18614564   PMID:19165324  
PMID:19188439   PMID:19423573   PMID:19633667   PMID:19717559   PMID:19799774   PMID:19822743   PMID:19855925   PMID:20226167   PMID:20498378   PMID:20614234   PMID:20843830   PMID:21166200  
PMID:21256930   PMID:21289290   PMID:21320072   PMID:21343341   PMID:21410792   PMID:21436055   PMID:21531208   PMID:21558314   PMID:21673970   PMID:21677750   PMID:21681188   PMID:21873635  
PMID:22295092   PMID:22343722   PMID:22437832   PMID:22683701   PMID:22718765   PMID:23235156   PMID:23248295   PMID:23370391   PMID:23585567   PMID:23958294   PMID:23967355   PMID:23992453  
PMID:24077057   PMID:24107951   PMID:24457600   PMID:24491550   PMID:25056880   PMID:25305142   PMID:25437912   PMID:25441029   PMID:25519244   PMID:25605235   PMID:25737280   PMID:26108881  
PMID:26410627   PMID:26711345   PMID:27926480   PMID:28126489   PMID:28671696   PMID:29025071   PMID:29382714   PMID:29518331   PMID:30230921   PMID:30322141   PMID:30550785   PMID:30595499  
PMID:30713523   PMID:31088288   PMID:31628181   PMID:32522888   PMID:32929985   PMID:32941492   PMID:32968282   PMID:33379368   PMID:33790404   PMID:34339735   PMID:34358562   PMID:35508658  
PMID:36114006   PMID:36417873   PMID:36808153   PMID:37589122   PMID:38635101  


Genomics

Comparative Map Data
Calm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912100,165,694 - 100,176,083 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12100,165,694 - 100,176,073 (+)EnsemblGRCm39 Ensembl
GRCm3812100,199,435 - 100,209,824 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12100,199,435 - 100,209,814 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712101,437,751 - 101,448,016 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612100,600,591 - 100,610,856 (+)NCBIMGSCv36mm8
Celera12101,426,181 - 101,436,442 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1250.43NCBI
CALM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381490,396,502 - 90,408,268 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1490,396,502 - 90,408,268 (+)EnsemblGRCh38hg38GRCh38
GRCh371490,862,846 - 90,874,612 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361489,933,126 - 89,944,363 (+)NCBINCBI36Build 36hg18NCBI36
Build 341489,933,129 - 89,944,148NCBI
Celera1470,910,477 - 70,921,767 (+)NCBICelera
Cytogenetic Map14q32.11NCBI
HuRef1471,038,153 - 71,049,443 (+)NCBIHuRef
CHM1_11490,801,276 - 90,812,578 (+)NCBICHM1_1
T2T-CHM13v2.01484,621,229 - 84,632,993 (+)NCBIT2T-CHM13v2.0
Calm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86125,217,191 - 125,227,855 (+)NCBIGRCr8
mRatBN7.26119,487,691 - 119,495,759 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6119,487,621 - 119,498,227 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6119,649,410 - 119,657,616 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06119,946,208 - 119,954,273 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06119,281,076 - 119,289,141 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06124,217,241 - 124,225,292 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6124,217,241 - 124,225,292 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06133,444,207 - 133,452,258 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46124,477,601 - 124,485,669 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16124,481,414 - 124,491,549 (+)NCBI
Celera6117,015,915 - 117,023,918 (+)NCBICelera
Cytogenetic Map6q32NCBI
Calm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543812,842,437 - 12,854,028 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543812,842,437 - 12,854,028 (+)NCBIChiLan1.0ChiLan1.0
CALM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21591,541,950 - 91,553,249 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11490,758,463 - 90,769,755 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01471,015,099 - 71,026,322 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11490,367,086 - 90,378,361 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,121,687 - 52,131,135 (+)Ensemblpanpan1.1panPan2
CALM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1861,398,231 - 61,408,874 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl861,398,244 - 61,406,195 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha860,978,989 - 60,989,622 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0861,672,887 - 61,680,835 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl861,672,892 - 61,683,535 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1861,353,922 - 61,364,539 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0861,402,765 - 61,413,376 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0861,731,734 - 61,739,644 (+)NCBIUU_Cfam_GSD_1.0
Calm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864014,480,463 - 14,488,619 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648817,580,454 - 17,588,507 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648817,580,425 - 17,588,480 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7112,160,806 - 112,171,744 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17112,160,823 - 112,171,754 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27118,728,008 - 118,738,940 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CALM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12468,133,446 - 68,145,117 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2468,133,428 - 68,145,180 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605355,415,057 - 55,426,335 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Calm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473412,030,001 - 12,041,772 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473412,030,264 - 12,041,682 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Calm1
326 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2164
Count of miRNA genes:676
Interacting mature miRNAs:842
Transcripts:ENSMUST00000001204, ENSMUST00000110082, ENSMUST00000127300, ENSMUST00000153524
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
12910790Pwgrq7_mpre-weaning growth rate QTL 7 (mouse)1290937367108645308Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
10412192Bbaa27_mB.burgdorferi-associated arthritis 27 (mouse)Not determined1291254220107308393Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse

Markers in Region
RH136100  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812100,208,774 - 100,208,981UniSTSGRCm38
MGSCv3712101,446,984 - 101,447,191UniSTSGRCm37
Celera12101,435,416 - 101,435,617UniSTS
Cytogenetic Map12EUniSTS
AI461935  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812100,209,427 - 100,209,624UniSTSGRCm38
MGSCv3712101,447,637 - 101,447,834UniSTSGRCm37
Celera12101,436,063 - 101,436,260UniSTS
Cytogenetic Map12EUniSTS
Whitehead/MRC_RH12920.91UniSTS
RH125454  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12EUniSTS
Calm1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812100,206,449 - 100,207,267UniSTSGRCm38
MGSCv3712101,444,659 - 101,445,477UniSTSGRCm37
Celera12101,433,089 - 101,433,907UniSTS
Cytogenetic Map12EUniSTS
cM Map74.5UniSTS
cM Map74.0UniSTS
cM Map12 UniSTS
AI327027  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812100,206,103 - 100,206,213UniSTSGRCm38
MGSCv3712101,444,313 - 101,444,423UniSTSGRCm37
Celera12101,432,743 - 101,432,853UniSTS
Cytogenetic Map12EUniSTS
Whitehead/MRC_RH12921.65UniSTS
Calm  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38716,915,425 - 16,915,583UniSTSGRCm38
MGSCv37717,500,774 - 17,500,932UniSTSGRCm37
Celera714,121,855 - 14,122,013UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map12EUniSTS
cM Map74.5UniSTS
Calm1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38716,915,425 - 16,915,598UniSTSGRCm38
MGSCv37717,500,774 - 17,500,947UniSTSGRCm37
Celera714,121,855 - 14,122,028UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map12EUniSTS
cM Map12 UniSTS
cM Map74.5UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001313934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW489089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY294999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FB335842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HH767181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M19381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X61432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000001204   ⟹   ENSMUSP00000001204
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,166,403 - 100,176,065 (+)Ensembl
GRCm38.p6 Ensembl12100,200,144 - 100,209,806 (+)Ensembl
Ensembl Acc Id: ENSMUST00000110082   ⟹   ENSMUSP00000105709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,165,694 - 100,176,073 (+)Ensembl
GRCm38.p6 Ensembl12100,199,435 - 100,209,814 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,171,662 - 100,172,754 (+)Ensembl
GRCm38.p6 Ensembl12100,205,403 - 100,206,495 (+)Ensembl
Ensembl Acc Id: ENSMUST00000153524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12100,165,788 - 100,170,196 (+)Ensembl
GRCm38.p6 Ensembl12100,199,529 - 100,203,937 (+)Ensembl
RefSeq Acc Id: NM_001313934   ⟹   NP_001300863
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912100,166,403 - 100,176,083 (+)NCBI
GRCm3812100,200,144 - 100,209,824 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009790   ⟹   NP_033920
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912100,165,694 - 100,176,083 (+)NCBI
GRCm3812100,199,435 - 100,209,824 (+)NCBI
MGSCv3712101,437,751 - 101,448,016 (+)RGD
Celera12101,426,181 - 101,436,442 (+)RGD
cM Map12 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001300863 (Get FASTA)   NCBI Sequence Viewer  
  NP_033920 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA66182 (Get FASTA)   NCBI Sequence Viewer  
  AAH54805 (Get FASTA)   NCBI Sequence Viewer  
  BAB23462 (Get FASTA)   NCBI Sequence Viewer  
  BAB28959 (Get FASTA)   NCBI Sequence Viewer  
  BAC40168 (Get FASTA)   NCBI Sequence Viewer  
  BAE26689 (Get FASTA)   NCBI Sequence Viewer  
  BAE29443 (Get FASTA)   NCBI Sequence Viewer  
  BAE30007 (Get FASTA)   NCBI Sequence Viewer  
  BAE30025 (Get FASTA)   NCBI Sequence Viewer  
  BAE30497 (Get FASTA)   NCBI Sequence Viewer  
  BAE30686 (Get FASTA)   NCBI Sequence Viewer  
  BAE30801 (Get FASTA)   NCBI Sequence Viewer  
  BAE30856 (Get FASTA)   NCBI Sequence Viewer  
  BAE30984 (Get FASTA)   NCBI Sequence Viewer  
  BAE31439 (Get FASTA)   NCBI Sequence Viewer  
  BAE31442 (Get FASTA)   NCBI Sequence Viewer  
  BAE31543 (Get FASTA)   NCBI Sequence Viewer  
  BAE31579 (Get FASTA)   NCBI Sequence Viewer  
  BAE31644 (Get FASTA)   NCBI Sequence Viewer  
  BAE31924 (Get FASTA)   NCBI Sequence Viewer  
  BAE31985 (Get FASTA)   NCBI Sequence Viewer  
  BAE32083 (Get FASTA)   NCBI Sequence Viewer  
  BAE35353 (Get FASTA)   NCBI Sequence Viewer  
  BAE35595 (Get FASTA)   NCBI Sequence Viewer  
  BAE35832 (Get FASTA)   NCBI Sequence Viewer  
  BAE36309 (Get FASTA)   NCBI Sequence Viewer  
  BAE36849 (Get FASTA)   NCBI Sequence Viewer  
  BAE38695 (Get FASTA)   NCBI Sequence Viewer  
  BAE39452 (Get FASTA)   NCBI Sequence Viewer  
  BAE39990 (Get FASTA)   NCBI Sequence Viewer  
  BAE40191 (Get FASTA)   NCBI Sequence Viewer  
  BAE40516 (Get FASTA)   NCBI Sequence Viewer  
  BAE40633 (Get FASTA)   NCBI Sequence Viewer  
  BAE40819 (Get FASTA)   NCBI Sequence Viewer  
  BAE40843 (Get FASTA)   NCBI Sequence Viewer  
  BAE41271 (Get FASTA)   NCBI Sequence Viewer  
  CAA43674 (Get FASTA)   NCBI Sequence Viewer  
  CAR80882 (Get FASTA)   NCBI Sequence Viewer  
  CBX84355 (Get FASTA)   NCBI Sequence Viewer  
  EDL18902 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000001204.8
  ENSMUSP00000019514.10
  ENSMUSP00000048857.7
  ENSMUSP00000105709
  ENSMUSP00000105709.4
  ENSMUSP00000157025.2
GenBank Protein P0DP26 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_033920   ⟸   NM_009790
- Peptide Label: isoform 2
- UniProtKB: Q91VQ9 (UniProtKB/Swiss-Prot),   Q8BNC9 (UniProtKB/Swiss-Prot),   Q498A3 (UniProtKB/Swiss-Prot),   Q3U7C7 (UniProtKB/Swiss-Prot),   Q3U6Z5 (UniProtKB/Swiss-Prot),   Q3THK5 (UniProtKB/Swiss-Prot),   Q3TEH7 (UniProtKB/Swiss-Prot),   P62204 (UniProtKB/Swiss-Prot),   Q9D6G4 (UniProtKB/Swiss-Prot),   P0DP28 (UniProtKB/Swiss-Prot),   P0DP27 (UniProtKB/Swiss-Prot),   P0DP26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001300863   ⟸   NM_001313934
- Peptide Label: isoform 1
- UniProtKB: Q3UKW2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000105709   ⟸   ENSMUST00000110082
Ensembl Acc Id: ENSMUSP00000001204   ⟸   ENSMUST00000001204
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P0DP26-F1-model_v2 AlphaFold P0DP26 1-149 view protein structure
AF-P0DP27-F1-model_v2 AlphaFold P0DP27 1-149 view protein structure
AF-P0DP28-F1-model_v2 AlphaFold P0DP28 1-149 view protein structure

Promoters
RGD ID:8679000
Promoter ID:EPDNEW_M17531
Type:initiation region
Name:Calm1_1
Description:Mus musculus calmodulin 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812100,199,527 - 100,199,587EPDNEW
RGD ID:6822788
Promoter ID:MM_KWN:12479
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000041174,   OTTMUST00000041175,   OTTMUST00000041176
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612101,437,391 - 101,437,891 (+)MPROMDB
RGD ID:6848999
Promoter ID:MM_XEF:1665
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:NM_001166106
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612101,438,551 - 101,439,307 (+)MPROMDB
RGD ID:6849015
Promoter ID:MM_XEF:1666
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   MEF_B6
Transcripts:NM_001008159,   NM_001032461,   NM_001095590,   NM_001126168,   NM_078986,   NM_165870,   NM_213351
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612101,440,064 - 101,440,564 (+)MPROMDB
RGD ID:6848607
Promoter ID:MM_TRO:2228
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:MTR000886.12.1591.5,   MTR000886.12.1591.6
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612101,441,686 - 101,442,186 (+)MPROMDB
RGD ID:6822789
Promoter ID:MM_KWN:12480
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6,   Spleen
Transcripts:OTTMUST00000041177
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612101,442,711 - 101,443,952 (+)MPROMDB
RGD ID:6846955
Promoter ID:MM_ACW:11756
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:CALM1.FSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612101,445,556 - 101,446,902 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88251 AgrOrtholog
Ensembl Genes ENSMUSG00000001175 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSMUSG00000019370 UniProtKB/Swiss-Prot
  ENSMUSG00000036438 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000001204.8 UniProtKB/TrEMBL
  ENSMUST00000019514.10 UniProtKB/Swiss-Prot
  ENSMUST00000040440.7 UniProtKB/Swiss-Prot
  ENSMUST00000110082 ENTREZGENE
  ENSMUST00000110082.11 UniProtKB/Swiss-Prot
  ENSMUST00000234406.2 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Calmodulin_Centrin_Ca-Bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12313 UniProtKB/Swiss-Prot
  mmu:12314 UniProtKB/Swiss-Prot
  mmu:12315 UniProtKB/Swiss-Prot
MGD MGI:88251 ENTREZGENE
NCBI Gene 12313 ENTREZGENE
PANTHER AT10229P-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALCIUM BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_1 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Calm1 PhenoGen
PRINTS RECOVERIN UniProtKB/Swiss-Prot
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A3Q4EHJ0_MOUSE UniProtKB/TrEMBL
  CALM1_MOUSE UniProtKB/Swiss-Prot
  CALM2_MOUSE UniProtKB/Swiss-Prot
  CALM3_MOUSE UniProtKB/Swiss-Prot
  P0DP26 ENTREZGENE
  P0DP27 ENTREZGENE
  P0DP28 ENTREZGENE
  P62204 ENTREZGENE
  Q3TEH7 ENTREZGENE
  Q3THK5 ENTREZGENE
  Q3U6Z5 ENTREZGENE
  Q3U7C7 ENTREZGENE
  Q3UKW2 ENTREZGENE, UniProtKB/TrEMBL
  Q498A3 ENTREZGENE
  Q8BNC9 ENTREZGENE
  Q91VQ9 ENTREZGENE
  Q9D6G4 ENTREZGENE
UniProt Secondary P02593 UniProtKB/Swiss-Prot
  P62204 UniProtKB/Swiss-Prot
  P70667 UniProtKB/Swiss-Prot
  P99014 UniProtKB/Swiss-Prot
  Q3TEH7 UniProtKB/Swiss-Prot
  Q3THK5 UniProtKB/Swiss-Prot
  Q3U6Z5 UniProtKB/Swiss-Prot
  Q3U7C7 UniProtKB/Swiss-Prot
  Q498A3 UniProtKB/Swiss-Prot
  Q61379 UniProtKB/Swiss-Prot
  Q61380 UniProtKB/Swiss-Prot
  Q8BNC9 UniProtKB/Swiss-Prot
  Q91VQ9 UniProtKB/Swiss-Prot
  Q9D6G4 UniProtKB/Swiss-Prot