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Gene: Zfhx2 (zinc finger homeobox 2) Rattus norvegicus

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Symbol:

Zfhx2

Name:

zinc finger homeobox 2

RGD ID:

735143

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of neuron differentiation; regulation of sensory perception of pain; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within adult behavior. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Marsili syndrome. Orthologous to human ZFHX2 (zinc finger homeobox 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

retina zinc finger homeodomain protein; ZFH; zinc finger homeobox protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZFHX2 (zinc finger homeobox 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Zfhx2 (zinc finger homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zfhx2 (zinc finger homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZFHX2 (zinc finger homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZFHX2 (zinc finger homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zfhx2 (zinc finger homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZFHX2 (zinc finger homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZFHX2 (zinc finger homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zfhx2 (zinc finger homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZFHX2 (zinc finger homeobox 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfhx2 (zinc finger homeobox 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch73-386h18.1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Danio rerio (zebrafish):	zfhx2 (zinc finger homeobox 2)	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Caenorhabditis elegans (roundworm):	zfh-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	zfh2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	zfh2	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	zfhx2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	32,501,755 - 32,541,720 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	32,503,115 - 32,535,085 (-)	Ensembl				GRCr8
mRatBN7.2	15	28,533,155 - 28,565,667 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	28,533,156 - 28,565,128 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	30,378,866 - 30,410,837 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	31,526,058 - 31,558,029 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	29,768,719 - 29,800,689 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	33,719,313 - 33,752,665 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	33,720,701 - 33,752,665 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	37,605,053 - 37,639,750 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	33,166,514 - 33,198,613 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	28,111,183 - 28,143,111 (-)	NCBI		Celera
RGSC_v3.1	15	33,182,838 - 33,186,707 (-)	NCBI
Cytogenetic Map	15	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

lysinuric protein intolerance (ISO)

Marsili syndrome (ISO,ISS)

Specific Granule Deficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

buta-1,3-diene (ISO)

butanal (ISO)

CGP 52608 (ISO)

clobetasol (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

DDE (ISO)

dichloroacetic acid (ISO)

dimethylarsinic acid (ISO)

endosulfan (EXP)

fenthion (ISO)

fenvalerate (EXP)

gentamycin (EXP)

heptanal (ISO)

hexanal (ISO)

inulin (ISO)

iron dichloride (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methylarsonic acid (ISO)

nonanal (ISO)

octanal (ISO)

paracetamol (EXP)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

propanal (ISO)

resveratrol (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Tesaglitazar (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

tunicamycin (ISO)

urethane (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult behavior (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of neuron differentiation (IBA)

regulation of sensory perception of pain (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA,IEA,ISO)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,IEA)

metal ion binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:23300874	PMID:29253101

Genomics

Comparative Map Data

Zfhx2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	32,501,755 - 32,541,720 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	32,503,115 - 32,535,085 (-)	Ensembl				GRCr8
mRatBN7.2	15	28,533,155 - 28,565,667 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	28,533,156 - 28,565,128 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	30,378,866 - 30,410,837 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	31,526,058 - 31,558,029 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	29,768,719 - 29,800,689 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	33,719,313 - 33,752,665 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	33,720,701 - 33,752,665 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	37,605,053 - 37,639,750 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	33,166,514 - 33,198,613 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	28,111,183 - 28,143,111 (-)	NCBI		Celera
RGSC_v3.1	15	33,182,838 - 33,186,707 (-)	NCBI
Cytogenetic Map	15	p13	NCBI

ZFHX2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	23,520,857 - 23,555,952 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	23,520,857 - 23,556,192 (-)	Ensembl			hg38	GRCh38
GRCh37	14	23,990,066 - 24,020,974 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	23,059,904 - 23,074,374 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	23,059,904 - 23,065,839	NCBI
Celera	14	3,852,721 - 3,867,194 (-)	NCBI		Celera
Cytogenetic Map	14	q11.2	NCBI
HuRef	14	4,106,427 - 4,137,222 (-)	NCBI		HuRef
CHM1_1	14	23,988,724 - 24,019,518 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	17,721,418 - 17,756,364 (-)	NCBI		T2T-CHM13v2.0

Zfhx2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	55,297,722 - 55,329,875 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	55,297,719 - 55,329,781 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	55,060,268 - 55,092,381 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	55,060,262 - 55,092,324 (-)	Ensembl			mm10	GRCm38
MGSCv37	14	55,680,495 - 55,710,885 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	54,015,729 - 54,046,119 (-)	NCBI		MGSCv36	mm8
MGSCv36	14	46,151,128 - 46,161,960 (-)	NCBI		MGSCv36	mm8
Celera	14	52,868,033 - 52,897,945 (-)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	28.05	NCBI

Zfhx2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	36,827,360 - 36,839,783 (+)	Ensembl
ChiLan1.0	NW_004955409	36,810,188 - 36,843,108 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZFHX2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	24,950,152 - 24,985,587 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	24,166,640 - 24,202,079 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	4,339,326 - 4,370,756 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	22,433,148 - 22,463,925 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	22,433,148 - 22,463,925 (-)	Ensembl			panPan2	panpan1.1

ZFHX2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	3,750,043 - 3,782,679 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	3,750,230 - 3,763,829 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	3,672,306 - 3,704,748 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	3,857,489 - 3,893,155 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	3,861,063 - 3,874,083 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	3,551,883 - 3,583,411 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	3,613,396 - 3,645,816 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	3,875,478 - 3,907,901 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zfhx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	35,493,160 - 35,523,823 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936722	864,735 - 895,848 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936722	865,197 - 895,848 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZFHX2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	75,552,618 - 75,586,132 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	75,554,876 - 75,586,782 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	80,888,042 - 80,897,326 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZFHX2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	23,891,343 - 23,926,507 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	23,892,443 - 23,905,767 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666059	22,492,136 - 22,527,213 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zfhx2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624820	9,041,153 - 9,053,975 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624820	9,025,569 - 9,057,084 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfhx2
76 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	125
Count of miRNA genes:	82
Interacting mature miRNAs:	97
Transcripts:	ENSRNOT00000034102
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	42356671	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
10755503	Bp391	Blood pressure QTL 391	2.37		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	20248600	37896129	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
9589149	Insul29	Insulin level QTL 29	9.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	15	1	34723002	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	12496141	65205939	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	11111142	56111142	Rat
8552920	Pigfal8	Plasma insulin-like growth factor 1 level QTL 8	3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	15	1	34723002	Rat
8694361	Abfw6	Abdominal fat weight QTL 6	10.2	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	15	1	34723002	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	10596089	55596089	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	41686771	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	27885774	86257085	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	19856566	46187442	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	29912054	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	19856566	34924750	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat

Markers in Region

BF386729

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	28,543,760 - 28,543,944 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	33,731,300 - 33,731,483	NCBI	Rnor6.0
Rnor_5.0	15	37,618,243 - 37,618,426	UniSTS	Rnor5.0
RGSC_v3.4	15	33,177,119 - 33,177,302	UniSTS	RGSC3.4
Celera	15	28,121,788 - 28,121,971	UniSTS
RH 3.4 Map	15	260.11	UniSTS
Cytogenetic Map	15	p13	UniSTS

RH138109

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	28,533,251 - 28,533,431 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	33,720,791 - 33,720,970	NCBI	Rnor6.0
Rnor_5.0	15	37,607,734 - 37,607,913	UniSTS	Rnor5.0
RGSC_v3.4	15	33,166,610 - 33,166,789	UniSTS	RGSC3.4
Celera	15	28,111,279 - 28,111,458	UniSTS
RH 3.4 Map	15	260.0	UniSTS
Cytogenetic Map	15	p13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	90	59	6	353	190	11	143	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001098803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC119471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY237644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000034102 ⟹ ENSRNOP00000029097

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	32,503,115 - 32,535,085 (-)	Ensembl
mRatBN7.2 Ensembl	15	28,533,156 - 28,565,128 (-)	Ensembl
Rnor_6.0 Ensembl	15	33,720,701 - 33,752,665 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083941 ⟹ ENSRNOP00000075520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	15	33,721,320 - 33,725,188 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173672 ⟹ ENSRNOP00000110051

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	32,503,115 - 32,535,085 (-)	Ensembl

RefSeq Acc Id:

NM_001098803 ⟹ NP_001092273

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	32,503,115 - 32,535,085 (-)	NCBI
mRatBN7.2	15	28,533,156 - 28,565,128 (-)	NCBI
Rnor_6.0	15	33,720,695 - 33,752,665 (-)	NCBI
Rnor_5.0	15	37,605,053 - 37,639,750 (-)	NCBI
RGSC_v3.4	15	33,166,514 - 33,198,613 (-)	RGD
Celera	15	28,111,183 - 28,143,111 (-)	RGD

Sequence:

show sequence

GGAGGAGGAGGAGACAGGGAGCAAGCCAGTGCCCAGGGTGAATCAATGGAAACCCACTCACGAA
GCCGGGAAAACACTTCAGCCGCAGCCAAATAGCATTGATTATTTTCTTTCACTTCCCTCACCGC
CGTGAATTTATTTATTTTTCCATCTCCGTCCCCGACGCCCCGGAGCGAGCGCTGAAGGGAGGGA
GGAGGAGGGGCAAAAAAGGAATCAACACATCGGAGAAGTCCCTTCCAAGAGCCGCCCCCTCCCC
TCCCCGCCTCGCGCTGCTTGGCGGCCGCGGTTCGACTCCCGTCCCTGCTTCCAGCTGAGGTGGT
ACTGGCTGTCACGCTGAAATGAACCCTCAGCAGTCCTCCGTCTACCATGGCTACCCTTAGCTCA
GTCTCTTCCTCTGGTACCATTCCTTCCCCTGGGCACCATGTTCCATCACCATCTCCAGAGACCT
CCTCCTCCAGCACCTCTGATCCTGTCACCAAAGATCCCCCTGATGCCCCCTCCACCGCTGAAAG
CATAAGGTCCTCAGAACCAGGGGGAGAGCATCTGGAGTCAGGCAGAGACCTTGCTCCACCAAAG
GAGATTGGAGAGCCCCGACACGAGCCTGGCTGTGGTCCCATCCCACCAAAGGACCTTGGGGTGT
CGAAGGAGGAGAAAGGAATCCTTCCTTTGGACCTAAGCAACCACTTACTATTTTCAGCTGGAGG
TCAGGCCTACCTTCTGGCCAACCTGTCCCTGTCAGGTGGCAGTGAACTCTTGTTACCAAAGGGC
TTCCCCTGGGATGAGGCAAGCGTCAAGGAAGAGCCCAGCCTGCCCCTCCTTGCCCACTTCCCCT
CCTCACACCTTACCACCCTTCACATCCAACATGGCTTTGACCCAGTCCAAGGCTTTAGCTCTTC
TGACCAAATTTTGTCCCATGATACCTCAGCGCCATCTCTGGCTGCCTGTGAGGGAAGGGATGGA
TCCTTCTGGAGCTACCAGCTGGTTCCAAACCCAACCGAAGATCCCAAAGATGGCCCCATGGGGA
GCCGACGGGGAGACCACAGGGCAATGTTCTGGATCTGCCTTCTATGCCGCCTGGGTTTCGGCAG
GCTCCAGGCCTTTATAGGTCACACACTTTCTCATGGAGTGAAGCTGACCCCTGCCCACCACCAA
GGCCTGCTGGGCAGCCCAGCTGTACTTCAGGAGGGTCATGATGGCGGCATGGCCTTCCTAAGCT
TTCTGGAACCAAAACTTCTTACTCACCCTTCTCCTGAGGTACCTGACACCAGCACAGTGACTGT
GAAGACAAATGGAGCCCAGGCTGAGGACGGCCCCCCAGAGGCAGACGTCCAGGCCCTTGTTCTC
CCCGGTGAAGAGGTTATGGCCCTCAGCCCACCATCCCCACCCACAGCCCTAGCCACCTGGGACC
CCAGCCCAACCCAAGCCAAAGAATCGCCAGTATCAAGAGGCGAGGCAGGGCCAGACTGGTTCCC
TGAGGGGCAGGAAGAGGACGGAGGGCTCTGCCTCCCGCTCAACCAAAGCTCACCCACCTCTAAG
GAGGTGGCCGTGCTCCCAGCTCCAGCAGGCTCTCCTGAAGACACCAGTGACCCACCTCAGTCCT
GTCGCCTGACTGATGACTACACTCCAGCCCCTGCAGCCTTCCAGGGCCTCAGCCTGTCCAGCCA
CATGTCCCTGCTACACTCACGCAATTCCTGCAAGACTCTCAAGTGTCCCAAGTGCAACTGGCAC
TACAAGTACCAGCAGACCCTGGATGTGCACATGCGGGAGAAACACCCCGAGAGCAACAGCCACT
GCAGCTACTGTAGCGCCGGGGGCGCCCACCCCCGCCTCGCTCGTGGAGAGAGCTACAACTGTGG
CTACAAGCCCTACCGCTGCGATGTCTGCAACTACTCAACTACCACCAAAGGCAACCTTAGCATC
CACATGCAGTCGGACAAGCACCTGGCCAACCTGCAGGGCTTCCAGGCAGGGCCTGGTGGGCAGG
CAAGTCCCCCAGAGGCATCCCTCCCACCCCCCTCCATAGGGGAGAAAGAGCCCAAGACCAAATC
ATCCTGGCAATGCAAAGTGTGCAGCTACGAAACCAACATCTCCCGAAACCTGCGCATCCACATG
ACCTCTGAGAAGCACATGCAGAACGTCCTGATGTTGCACCAGGGGCTGCCACTCGGCCTGCCCC
CGGGGCTGGTGGGACCAGGTCCTCCTCCCCCACCAGGGGCTGCCCCCACCAACCCTCCTGAACT
CTTCCAGTACTTTGGGCCCCAGGCCCTAGGACAGCCTCAGACATCCATGCCTGGGCCCGGGCTG
AGGCCAGACAAGCCCCTTGAAGCTCAGCTACTTCTCAATGGTTTCCACCACCTTGGAGCGCCTG
CCCGAAAGTTCCCCACAGCCGCCCCCGGCAGCCTCTCCCCTGAGACCCATCTGCCACCAAGTCA
ACTCCTGGGCTCCTCGTCGGATGGCCTGTCCACTTCACCATCCCCAGATGACAGCCCACCCCTG
AAGGTGTTCCGCTGCCTGGTGTGCCAGGCCTTCAGCACAGACAGCCTGGAACTGCTGCTGTACC
ATTGCAGCATTGGCCGGACCCTCCCGGAAGCTGAATGGAAGGAGGTAGCTGGTGACACCCACCG
GTGCAAGCTCTGCTGCTATGGCACCCAGCTCAAGGCCAACTTCCAGCTCCACCTCAAGACTGAC
AAACATACTCAGAAATACCAGCTAGCAGCCCACCTCCGGGAGGGGGGCGGAGCCATGGGCAGCC
CCTCACCACTGTCCCTGGGGGATGGGACTTCATACGGCGGCTCTGTCTCCCCGCTTCACCTGCG
CTGCAACATCTGTGACTTTGAGTCCAACAGCAAGGAGAAGATGCAGCTGCACGCCCGGGGTTCA
GCCCACGAAGAAAACAGCCAGATCTATAAGTTTCTGCTGGAAATGGAAGGAGCAGAGGCAGGAC
CAGAGCCGGGGCTTTACCACTGCCTGCTGTGTGCCTGGGACACGCCCTCCCGCCTAGCTGTGCT
GCAACATCTACGCATGCCCGCCCACCGCGATGCCCAGGCCCAGAGGCGTCTGCAGCTGCTACAG
AGCGGCCCAGCAGCCGAAGAAGGACTCTCAGCTCTCCAGAGTATTCTGAGCTTCAGCCGTGGGC
GGCTTCAGACTCCTGGGAAGGCTCCTGACACCCCCTTAGCTCAGCCACCCACCTCTGAGAAAGA
TGCCCAGAACAGGACAGAACAACGGGCTTCCGAAGTGACAGAGGACAGAACTGGCCCTCCCAGA
GACAGTGCCAACCAGATCACGGTATTCTGCTGTCCTTACTGCAGCTTCCTGAGCCCAGAGTGTG
ACCAGGTGAGAGTTCATACACTCTCCCAGCATGCCGTGCAGCCCAAGTACAGGTGCCCGCTCTG
CCAGGAGCAGCTGGTGGGCCGGCCTGCCCTGCACTTCCACCTCAGCCACCTTCACAACGTGGTG
CCCGAATGTGTTGAGAAACTGCTGCTTGTGGCCACAACTGTAGAGATGACCTTTGCAACCAAAA
TGCTGCCTGGACCCACATTAAACCCTGTGGAGGATGGCCTAGAACGCCCAGCTCCTGGACCAGA
GCCCACTCCCAACAGAGACCAGGTAGCAGACAGCTCTAACCTGGCCCCAGAAGCCAGTCCAGAT
CCTCCTCCTCCTCCTGAGCCTCCCCTGGCACCAGTCGAGGGCCCCATGGAGCCCTCAGAAAGCC
CTCAGCAGCCCCCTTCTCCAGCCTCATCTCCAGTCCCTCGGCCAGATGCCCAAGTTGAAGAATT
GACTCCTCTACCTACCATGTCTGAAGAGGAAGAGGGAGTCATGGGGGAGCCCCGCTCTGCAGAG
CCAAGCCCAGCTGACTCTCGCCATCTAACCTATCGGAAGACCACCAACTTTGCCCTGGACAAGT
TTCTTGACCCTGCTCGGCCCTATAAGTGTACTGTGTGTAAGGAGTCCTTCACCCAGAAGAACAT
CCTCCTGGTTCATTATAACTCCGTCTCTCACCTTCATAAGATGAAGAAGGCCGCCATTGACCCA
TCATGCCCTGCCCGAGGAGAGGCCGGCATCCCGCCACCCACCACCACTGCGTCAGACAAGCCCT
TTAAGTGCACAGTCTGCCGAGTGTCCTACAACCAGAGCTCCACTTTGGAGATTCACATGCGATC
CGTTCTGCATCAGACTCGCTCAAGGGGGGCCAAGACTGATGCCAGGACCGAAGGACCAGAGCGA
AGCCAAGAAGAGCTCAAGGAAGGCGAGACGGAGGGCGAGGTGGGCACTGAGAAGAAAGGCCCTG
ACCCCAGTGGCTTCATGTCTGGACTGCCTTTCCTGTCCCCACCACCCCCTCCCTTGGACCTGCA
CCGATTCCCCGCCCCTCTCTTCACCCCACCAGTCCTGCCCCCCTTCCCTCTGGTTCCAGAATCA
CTACTCAAGCTCCAGCAACAACAGCTGCTTCTTCCCTTCTACCTCCATGACCTCAAGGTGGGGC
CCAAGCTGGCACTGGCTAGCCCTACGCCCATGCTGTCCCTGCCAGCCGCCAACCCACCTCCTCT
CCCTGCACCCCCCAAGGCTGAGCTGGCTGAGCAGGAATGGGAACGGCCCCTCATAGCTGAGGAG
GGGACTGAAGCGGGACCCTCCTCACCACCCCACTCGTCACCCAATGAAGCCGCTCGCACAGCAG
CCAAAGCCCTTTTAGAAAATTTTGGCTTTGAGTTAGTAATTCAGTACAATGAAGGGAAGCAGGC
AGTGCCCCCTCCCCCGACTCCTCCTCCCCCAGAGTCTCTGGGGGGCGGAGACAAGCTGGCGTGC
GGGGCCTGTGGGAAACTCTTCTCCAATATGCTTATCCTTAAGACTCATGAGGAACATGTTCACC
GGCGCTTTCTGCCCTTCGAGGCTCTGAGCCGTTATGCTGCTCAGTTTCGAAAGAGCTATGATAG
CCTGTACCCACCCCCAGTAGAGCCCCCCAAACCTCCAGATGGGTCCCTAGAGTCACCTCCCCAG
CTAGGCCCACCTTTCGTGGTTCCTGAGCCTGAAGTAGGGGGGATCCACACTTCTGAGGAGCGAG
GCCTGGCAGGAGGACCCTGGCCCTCAGAGGAAGAGGAAGGCTCTAGAGGGAGTGTAGTCCCTGT
AGGCCGCCGGTTCTCTAGAACCAAGTTTACAGAGTTCCAGACCCAGGCCCTGCAGTCTTTCTTT
GAGACTAGTGCCTACCCCAAGGACGGAGAGGTGGAGCGGCTTGCAAGTCTCCTGGGCCTGGCTA
GCCGTGTGGTCGTGGTGTGGTTCCAGAATGCCCGCCAGAAAGCCCGAAAAAATGCTTGCGAGGG
TGGGCCCATGACAGCTGGAGGAGCCACGGGAGGAGCCTCTGGCTGCAGGCGCTGCCACGCCACC
TTCGCCTGTGTTTTTGAGTTAGTGCGGCACCTCAAGAAGTGCTTTGATGACCAGCCTCCCGCGG
AGGAGGAGGAGGCAGAGAGAGGGGAAGAGGAGGAAGAGGTAGAGGAAGAGGAGGTGGAGGAACG
GAACCCGGAACCTGCAGGAAGACATGGTGACCGATCACCAGAACGTGCAAATGCGGAAGACGTA
GGCCAAGCAGAGCCAACAAGGCCAGAAAGCAAAGAGACTGAAGGGAAGGCGCCTCCCTCACCCC
CAGCACACACCTGTGACCAGTGTTCCATTTCCTTCCCCAGCCAGGACCTCCTGACCACGCACCA
CCGACTGCATTTCCTACCATCGGTGCAGCCCAGTGCCCCGTCACAGCTCCTAGATCTGCCTTTG
CTGGTGTTTGGGGAGCGAAACCCTGTAGTATCGGGCCCCTCATCAGTGACAGGGACACCCCTCA
AGCGGAAGCACGATGACGGCAGTCTGTCTCCCACGGGCAGTGAAGCAGGGGGCGGAGGAGAGGG
TGAACCCCCCAAAGACAAACGCCTACGCACTACCATCCTGCCGGAGCAGCTGGAGATCCTGTAC
CGCTGGTACATGCAGGACTCCAACCCCACACGGAAGATGCTCGACTGCATCTCTGAGGAAGTGG
GGCTCAAAAAACGAGTCGTGCAGGTCTGGTTCCAGAATACCAGAGCCCGGGAGAGGAAAGGTCA
GTTTCGAAGCACCCCTGGGGGAGTGGCTGGTCCAGCAGCCAAGCCCACTGCCACGCCCTCCCCA
GCACCCTTCCCCAAATTCAATCTCCTATTGAGCAAGATCGAAGATGAGACTGGGAAGGAAGCCC
CAAAGAGAGAAGCACCTGCCTTTCCCTACCCCACAGTCACCCCTGCTGCCGCTCCTGGGCCTCT
GCCATTCCTAGCGCCTGGGAAAGAGGTCACTGCACCAACACCAGAGCCCCCTCCACCCCTCCCT
CCGTCTGCACTCAGTGAGGATGAGGGTCCAGAAGAACCATCCAAAGCATCTCCAGAAAGCGAGG
CTTGCAGTCCATCAGCAGGAGACCTAAGTGATTCATCTGCTTCCAGCCTGGCTGAACCAGAGTC
CCCTGGGGCTGGGGGGAATGGTGGAGGACCAGGCAGTGGGCCTGGAGTTCCCGATGGCATGGGA
CAGCGGCGGTATAGGACCCAGATGAGCAGCCTGCAGCTAAAGATCATGAAAGCTTGCTATGAAG
CCTACCGCACCCCTACTATGCAGGAGTGTGAGGTGCTCGGGGAGGAAATCGGACTACCCAAGAG
AGTCATCCAGGTCTGGTTCCAAAATGCCCGTGCCAAGGAAAAAAAAGCCAAACTGCAGGGGACA
GCACCAGCAGGGAGTGGGGGTGGCAGTGAGGGCCCCTCTGCAGCCCAGCGAACCGACTGCCCCT
ACTGCGATGTCAAGTATGACTTCTATGTCTCCTGCCGAGGCCACCTCTTCTCTCGGCAGCACCT
TGCCAAGCTTAAGGAGGCCGTCCGAGCCCAGCTGAAGAGCGAAAGCAAATGCTATGACTTAGCT
CCTGCACCCGAGACCCCACTGGCCCCCAAAGGGCCACCCGCCACCACGCCTGCCTCCGTGCCCT
TGGGGGCTTCCCCGACCTTGCCTCGCCTGGCTCCAGTCCTCTTGCCTGGCCCAACTCTAGCCCA
GCCACCACTTGGAAGCATAGCTTCTTTCAATTCAGGCCCTGCAGCCTCCTCAGGCCTTCTTGGC
CTTGCCACTTCCGTCCTGCCTGCTACCACAGTGGTCCAGACTGCTGGTCCAGGCCGCCCCTTAC
CTCAGAGACCTGTGTCTAACCAAACCAACAGTTCTACTGACCCTTCCCCTGGCCCAGCTACTGA
GCCCTCAGGAGACAAAGTCTCTGGTGAGCGAAAGCCAGTTGCAACGCTTACCAACTCTTCCACT
GACGCCCTCAAGAACCTGAAAGCATTGAAGGCCACTGTCCCAGCTCTGTTGGGGGGCCAATTCC
TGCCCTTCCCATTGCCCCCTGCAGGCGGGGCAGCACCACCAGCCGTCTTTGGCCCTCAGTTACA
GGGGTCATACTTCCAACAGCTTTATGGCATGAAGAAGGGGCTATTTCCCATGAACCCGGTGATA
CCTCAGACCCTCATTGGGCTGCTACCCAATGCCCTCCTCCAGCAACCACCCCAAGCCCCTGAGC
CTACAGCTACAGCCCCTCCAAAGCCTCCTGAGCTGCCGGCTCCGGGGGAAGGGGAGAGTAGTGA
GGCTGACGAGCTGCTGACAGGCAGCGCTGGCATCTCCACCGTGGATGTGACTCACCGCTACTTG
TGCCGCCAGTGCAAGATGGCATTTGACGGCGAGGCTCCAGCTACTGCCCACCAGAGATCCTTCT
GCTTCTTTGGGCGGGGTTCTGGGGGCTCCATGCCCGCCCCATTGCGGGTGCCTATCTGCACCTA
CCACTGCCTGGCCTGTGAGGTGCTGCTGAGTGGGCGTGAAGCCCTAGCCTCCCATCTGCGCTCC
TCAGCCCACAGGCGCAAGGCAGCCCCGCCCCCAGGAGGCCCTCCCATCACCGTTACCAACAGCG
CCACTGCTGTCCCGGCTGCTGTGGCTTTTGCCAAAGAGGAAGCAAGATTACCTCACACGGACCC
CAACCCCCAAACTACTACTACCTCTACACTTCTAGCTTTATAAACAGATAAACCAAGATGGGGA
CAAGAGAGGGCCTCAGGGTTCCCTCACCCCAACCTTCAGCTCTGCCCACCTCATGGGAGTCTGT
CAATTCCCACCCTCAGTGGGCTTCACACACCCCACCTCCAGCAGAGTCCTGCCTCCCCGTCCCA
CAAACACTCTGACCCTCATTCTCAGCCCCTTGCAGATGCACCCCAACTGTCTGTTTTTTCCCCC
ATTGAATTCCCAGTCCTCTTCCCTTGTAAACACATACCTTTTCCATACTATTATAGTGACTGAG
AAAAACGCCAAAAGAAAGAAAAGAAAAAGGCAAAAAAAGGGGGGTGGAAAATCAACTTTGCCAC
CCCCCTTCTTCCTGTCCCTTGTCCAGAGCACAGACCGCTCACAAACTCCAAAAACCCAGTTGGT
TCCTAAGGTTGGAGCCTGGGATGGGCAAGGAGCCCATAAAACTAACCAAACTGGAGGCTGTCAG
GGGGAGAAGCACCCCTGGTCACCCTCCCCGCGCCCCTCCCTTCTTTCCTTCTCCTCACCTGGTA
GGACCCTTGCAGCCTGGACTCCCGGGGAAGCCGCTGCCAGGAAGCCCTCTACCACCCCTCACCC
CTACCCTGGAAACTGCAGTAACTTTTTCTCAAAGGCTTTAAACACGGAGGTCCTCTCAGCAGCC
GTGGGCCTGCCCCCTTGCCCTAGCCCTGCCAAGGGCGGTCCAGCTTCCGGGGATCAGCATTGCC
CACCAATGGCAAATCCAAAGTTCTTAAAAAAAAAAAATCCACACCAAATAAACAAGAGCAAGAG
AGAGTGTGCGCAGACACGTGAGATGGAGAGACCAGAAGGATGAAGTAAAGAAAAACATAAACTT
TGAATATACGTAGAGAGAGAGAAAAAAAAAGAAAACTCTCATCAAACAA

hide sequence

RefSeq Acc Id:

XM_039093293 ⟹ XP_038949221

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	32,501,755 - 32,532,125 (-)	NCBI
mRatBN7.2	15	28,533,155 - 28,564,548 (-)	NCBI

RefSeq Acc Id:

XM_039093294 ⟹ XP_038949222

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	32,501,755 - 32,534,908 (-)	NCBI
mRatBN7.2	15	28,533,155 - 28,565,641 (-)	NCBI

RefSeq Acc Id:

XM_039093295 ⟹ XP_038949223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	32,501,755 - 32,514,074 (-)	NCBI
mRatBN7.2	15	28,533,155 - 28,544,131 (-)	NCBI

RefSeq Acc Id:

XM_039093296 ⟹ XP_038949224

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	32,501,755 - 32,510,974 (-)	NCBI
mRatBN7.2	15	28,533,155 - 28,540,502 (-)	NCBI

RefSeq Acc Id:

XM_063274250 ⟹ XP_063130320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	32,501,755 - 32,541,720 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001092273	(Get FASTA)	NCBI Sequence Viewer
	XP_038949221	(Get FASTA)	NCBI Sequence Viewer
	XP_038949222	(Get FASTA)	NCBI Sequence Viewer
	XP_038949223	(Get FASTA)	NCBI Sequence Viewer
	XP_038949224	(Get FASTA)	NCBI Sequence Viewer
	XP_063130320	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAP72019	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000029097
	ENSRNOP00000029097.5
	ENSRNOP00000110051

RefSeq Acc Id:

NP_001092273 ⟸ NM_001098803

- UniProtKB:

D3ZF41 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATLSSVSSSGTIPSPGHHVPSPSPETSSSSTSDPVTKDPPDAPSTAESIRSSEPGGEHLESGR
DLAPPKEIGEPRHEPGCGPIPPKDLGVSKEEKGILPLDLSNHLLFSAGGQAYLLANLSLSGGSE
LLLPKGFPWDEASVKEEPSLPLLAHFPSSHLTTLHIQHGFDPVQGFSSSDQILSHDTSAPSLAA
CEGRDGSFWSYQLVPNPTEDPKDGPMGSRRGDHRAMFWICLLCRLGFGRLQAFIGHTLSHGVKL
TPAHHQGLLGSPAVLQEGHDGGMAFLSFLEPKLLTHPSPEVPDTSTVTVKTNGAQAEDGPPEAD
VQALVLPGEEVMALSPPSPPTALATWDPSPTQAKESPVSRGEAGPDWFPEGQEEDGGLCLPLNQ
SSPTSKEVAVLPAPAGSPEDTSDPPQSCRLTDDYTPAPAAFQGLSLSSHMSLLHSRNSCKTLKC
PKCNWHYKYQQTLDVHMREKHPESNSHCSYCSAGGAHPRLARGESYNCGYKPYRCDVCNYSTTT
KGNLSIHMQSDKHLANLQGFQAGPGGQASPPEASLPPPSIGEKEPKTKSSWQCKVCSYETNISR
NLRIHMTSEKHMQNVLMLHQGLPLGLPPGLVGPGPPPPPGAAPTNPPELFQYFGPQALGQPQTS
MPGPGLRPDKPLEAQLLLNGFHHLGAPARKFPTAAPGSLSPETHLPPSQLLGSSSDGLSTSPSP
DDSPPLKVFRCLVCQAFSTDSLELLLYHCSIGRTLPEAEWKEVAGDTHRCKLCCYGTQLKANFQ
LHLKTDKHTQKYQLAAHLREGGGAMGSPSPLSLGDGTSYGGSVSPLHLRCNICDFESNSKEKMQ
LHARGSAHEENSQIYKFLLEMEGAEAGPEPGLYHCLLCAWDTPSRLAVLQHLRMPAHRDAQAQR
RLQLLQSGPAAEEGLSALQSILSFSRGRLQTPGKAPDTPLAQPPTSEKDAQNRTEQRASEVTED
RTGPPRDSANQITVFCCPYCSFLSPECDQVRVHTLSQHAVQPKYRCPLCQEQLVGRPALHFHLS
HLHNVVPECVEKLLLVATTVEMTFATKMLPGPTLNPVEDGLERPAPGPEPTPNRDQVADSSNLA
PEASPDPPPPPEPPLAPVEGPMEPSESPQQPPSPASSPVPRPDAQVEELTPLPTMSEEEEGVMG
EPRSAEPSPADSRHLTYRKTTNFALDKFLDPARPYKCTVCKESFTQKNILLVHYNSVSHLHKMK
KAAIDPSCPARGEAGIPPPTTTASDKPFKCTVCRVSYNQSSTLEIHMRSVLHQTRSRGAKTDAR
TEGPERSQEELKEGETEGEVGTEKKGPDPSGFMSGLPFLSPPPPPLDLHRFPAPLFTPPVLPPF
PLVPESLLKLQQQQLLLPFYLHDLKVGPKLALASPTPMLSLPAANPPPLPAPPKAELAEQEWER
PLIAEEGTEAGPSSPPHSSPNEAARTAAKALLENFGFELVIQYNEGKQAVPPPPTPPPPESLGG
GDKLACGACGKLFSNMLILKTHEEHVHRRFLPFEALSRYAAQFRKSYDSLYPPPVEPPKPPDGS
LESPPQLGPPFVVPEPEVGGIHTSEERGLAGGPWPSEEEEGSRGSVVPVGRRFSRTKFTEFQTQ
ALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKARKNACEGGPMTAGGATGGASGC
RRCHATFACVFELVRHLKKCFDDQPPAEEEEAERGEEEEEVEEEEVEERNPEPAGRHGDRSPER
ANAEDVGQAEPTRPESKETEGKAPPSPPAHTCDQCSISFPSQDLLTTHHRLHFLPSVQPSAPSQ
LLDLPLLVFGERNPVVSGPSSVTGTPLKRKHDDGSLSPTGSEAGGGGEGEPPKDKRLRTTILPE
QLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERKGQFRSTPGGVAGPAAKP
TATPSPAPFPKFNLLLSKIEDETGKEAPKREAPAFPYPTVTPAAAPGPLPFLAPGKEVTAPTPE
PPPPLPPSALSEDEGPEEPSKASPESEACSPSAGDLSDSSASSLAEPESPGAGGNGGGPGSGPG
VPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARAKEKK
AKLQGTAPAGSGGGSEGPSAAQRTDCPYCDVKYDFYVSCRGHLFSRQHLAKLKEAVRAQLKSES
KCYDLAPAPETPLAPKGPPATTPASVPLGASPTLPRLAPVLLPGPTLAQPPLGSIASFNSGPAA
SSGLLGLATSVLPATTVVQTAGPGRPLPQRPVSNQTNSSTDPSPGPATEPSGDKVSGERKPVAT
LTNSSTDALKNLKALKATVPALLGGQFLPFPLPPAGGAAPPAVFGPQLQGSYFQQLYGMKKGLF
PMNPVIPQTLIGLLPNALLQQPPQAPEPTATAPPKPPELPAPGEGESSEADELLTGSAGISTVD
VTHRYLCRQCKMAFDGEAPATAHQRSFCFFGRGSGGSMPAPLRVPICTYHCLACEVLLSGREAL
ASHLRSSAHRRKAAPPPGGPPITVTNSATAVPAAVAFAKEEARLPHTDPNPQTTTTSTLLAL

hide sequence

Ensembl Acc Id:

ENSRNOP00000029097 ⟸ ENSRNOT00000034102

Ensembl Acc Id:

ENSRNOP00000075520 ⟸ ENSRNOT00000083941

RefSeq Acc Id:	XP_038949222 ⟸ XM_039093294
- Peptide Label:	isoform X2
- UniProtKB:	D3ZF41 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949221 ⟸ XM_039093293
- Peptide Label:	isoform X1
- UniProtKB:	D3ZF41 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949223 ⟸ XM_039093295
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038949224 ⟸ XM_039093296
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063130320 ⟸ XM_063274250
- Peptide Label:	isoform X1
- UniProtKB:	D3ZF41 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000110051 ⟸ ENSRNOT00000173672

Protein Domains

C2H2-type Homeobox

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZF41-F1-model_v2	AlphaFold	D3ZF41	1-2558	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735143	AgrOrtholog
BioCyc Gene	G2FUF-13743	BioCyc
Ensembl Genes	ENSRNOG00000025634	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000034102	ENTREZGENE
	ENSRNOT00000034102.6	UniProtKB/TrEMBL
	ENSRNOT00000173672	ENTREZGENE
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_U1	UniProtKB/TrEMBL
	ZnFinger_Homeobox_TR	UniProtKB/TrEMBL
NCBI Gene	305888	ENTREZGENE
PANTHER	PTHR45891:SF1	UniProtKB/TrEMBL
	ZINC FINGER HOMEOBOX PROTEIN	UniProtKB/TrEMBL
Pfam	Homeobox	UniProtKB/TrEMBL
	zf-C2H2_ZFHX3	UniProtKB/TrEMBL
PhenoGen	Zfhx2	PhenoGen
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000025634	RatGTEx
SMART	HOX	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
	ZnF_U1	UniProtKB/TrEMBL
Superfamily-SCOP	Homeodomain_like	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	D3ZF41	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Zfhx2	zinc finger homeobox 2	ZFH	retina zinc finger homeodomain protein	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM