Nme8 (NME/NM23 family member 8) - Rat Genome Database

Name: Nme8
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Nme8 (NME/NM23 family member 8) Rattus norvegicus

Analyze

Symbol:

Nme8

Name:

NME/NM23 family member 8

RGD ID:

735069

Description:

Predicted to enable microtubule binding activity. Predicted to be involved in cilium assembly and flagellated sperm motility. Predicted to act upstream of or within cellular response to reactive oxygen species. Located in sperm fibrous sheath. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 6. Orthologous to human NME8 (NME/NM23 family member 8); INTERACTS WITH bisphenol A; trichloroethene; 17alpha-ethynylestradiol (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

spermatid-specific thioredoxin-2 protein; sptrx-2; Sptrx2; thioredoxin domain containing 3; thioredoxin domain containing 3 (spermatozoa); thioredoxin domain-containing protein 3; Txndc3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NME8 (NME/NM23 family member 8)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Nme8 (NME/NM23 family member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nme8 (NME/NM23 family member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NME8 (NME/NM23 family member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NME8 (NME/NM23 family member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nme8 (NME/NM23 family member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NME8 (NME/NM23 family member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NME8 (NME/NM23 family member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nme8 (NME/NM23 family member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NME8 (NME/NM23 family member 8)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nme8 (NME/NM23 family member 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nme8 (NME/NM23 family member 8)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG18130	Alliance	DIOPT (InParanoid\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG14221	Alliance	DIOPT (InParanoid\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	nme9	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	45,237,022 - 45,304,948 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	45,238,120 - 45,304,948 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	47,314,521 - 47,383,402 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	52,073,680 - 52,142,565 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	46,564,073 - 46,632,963 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	47,300,932 - 47,368,543 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	47,301,511 - 47,368,553 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	56,120,328 - 56,185,444 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	53,037,090 - 53,105,985 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	53,040,678 - 53,108,823 (+)	NCBI
Celera	17	51,224,029 - 51,290,939 (-)	NCBI		Celera
Cytogenetic Map	17	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

primary ciliary dyskinesia (ISO)

primary ciliary dyskinesia 6 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

antirheumatic drug (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

dorsomorphin (ISO)

entinostat (ISO)

genistein (ISO)

mercury dibromide (ISO)

methylmercury chloride (ISO)

panobinostat (ISO)

phenylmercury acetate (ISO)

SB 431542 (ISO)

sodium fluoride (ISO)

tamoxifen (ISO)

Tributyltin oxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to reactive oxygen species (IEA,ISO)

cilium assembly (IBA,IEA,ISO)

flagellated sperm motility (IBA,IEA,ISO)

spermatid development (NAS)

Cellular Component

axoneme (IBA,ISO)

cytoplasm (ISO)

cytosol (IEA,ISO)

nuclear speck (IEA,ISO)

nucleus (ISO)

outer dynein arm (IEA,ISO)

sperm cytoplasmic droplet (IEA,ISO)

sperm fibrous sheath (IDA)

sperm midpiece (IEA,ISO)

sperm principal piece (IBA,IEA,ISO)

Molecular Function

microtubule binding (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Cloning and developmental analysis of murid spermatid-specific thioredoxin-2 (SPTRX-2), a novel sperm fibrous sheath protein and autoantigen.	Miranda-Vizuete A, etal., J Biol Chem 2003 Nov 7;278(45):44874-85. Epub 2003 Aug 7.
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17360648	PMID:22871113	PMID:23707457

Genomics

Comparative Map Data

Nme8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	45,237,022 - 45,304,948 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	45,238,120 - 45,304,948 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	47,314,521 - 47,383,402 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	52,073,680 - 52,142,565 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	46,564,073 - 46,632,963 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	47,300,932 - 47,368,543 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	47,301,511 - 47,368,553 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	56,120,328 - 56,185,444 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	53,037,090 - 53,105,985 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	53,040,678 - 53,108,823 (+)	NCBI
Celera	17	51,224,029 - 51,290,939 (-)	NCBI		Celera
Cytogenetic Map	17	q11	NCBI

NME8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	37,848,597 - 37,900,397 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	37,848,597 - 37,900,397 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	37,888,199 - 37,939,999 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	37,854,724 - 37,906,528 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	37,661,438 - 37,713,238	NCBI
Celera	7	37,872,948 - 37,924,718 (+)	NCBI		Celera
Cytogenetic Map	7	p14.1	NCBI
HuRef	7	37,768,407 - 37,820,357 (+)	NCBI		HuRef
CHM1_1	7	37,887,675 - 37,939,959 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	37,989,652 - 38,041,414 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	37,926,134 - 37,977,903 (+)	NCBI

Nme8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	19,829,248 - 19,881,996 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	19,829,248 - 19,881,964 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	19,645,078 - 19,697,826 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	19,645,078 - 19,697,794 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	19,736,947 - 19,789,629 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	19,652,543 - 19,705,225 (-)	NCBI		MGSCv36	mm8
Celera	13	19,988,291 - 19,996,418 (-)	NCBI		Celera
Cytogenetic Map	13	A2	NCBI
cM Map	13	7.0	NCBI

Nme8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	5,680,678 - 5,718,628 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955460	5,672,768 - 5,718,707 (-)	NCBI	ChiLan1.0	ChiLan1.0

NME8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	7	90,651,590 - 91,058,066 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	38,128,610 - 38,536,611 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	38,708,937 - 38,757,802 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	38,708,937 - 38,757,795 (+)	Ensembl	panpan1.1		panPan2

NME8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	12,038,369 - 12,088,544 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	12,038,450 - 12,087,626 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	11,682,915 - 11,733,063 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	12,309,712 - 12,359,547 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	18	12,126,922 - 12,176,754 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	12,047,339 - 12,097,182 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	12,274,833 - 12,324,653 (-)	NCBI		UU_Cfam_GSD_1.0

Nme8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	93,964,657 - 94,040,183 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	13,177,529 - 13,243,037 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936478	13,176,388 - 13,243,043 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NME8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	108,358,535 - 108,392,781 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	108,358,289 - 108,393,755 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	119,105,762 - 119,136,177 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NME8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	20,617,683 - 20,670,346 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	20,620,941 - 20,668,888 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666062	1,671,514 - 1,725,043 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nme8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	23,349,858 - 23,396,888 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	23,351,832 - 23,396,905 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Nme8
214 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	166
Count of miRNA genes:	62
Interacting mature miRNAs:	67
Transcripts:	ENSRNOT00000059201, ENSRNOT00000059202, ENSRNOT00000066673
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15330613	55836425	Rat
1354640	Scl32	Serum cholesterol level QTL 32	5.4		blood HDL cholesterol amount (VT:0000184)	blood high density lipoprotein cholesterol level (CMO:0000052)	17	15781592	60781592	Rat
1354659	Scl68	Serum cholesterol level QTL 68	3.9		blood VLDL cholesterol amount (VT:0005144)	blood very low density lipoprotein cholesterol level (CMO:0000648)	17	15781592	60781592	Rat
7394837	Memor18	Memory QTL 18			exploratory behavior trait (VT:0010471)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	17	18640182	63640182	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21293039	60781592	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22454924	50909196	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23080567	59555013	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	57246843	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23653184	68653184	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23653184	68653184	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23653184	68653184	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23653184	68653184	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	68653184	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	24599340	69599340	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27027949	56836890	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27027949	60463643	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	27389946	53481766	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	28409147	73409147	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	28409147	73409147	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	31368391	62109574	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	31368391	73951021	Rat
2313854	Bp343	Blood pressure QTL 343	3.9		life span trait (VT:0005372)	age at time of death (CMO:0001193)	17	31990784	50909196	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	34550843	73951021	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	35837085	69599340	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	0.00000071	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
631497	Bp98	Blood pressure QTL 98	3.66		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	41354651	60463643	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	17	42073160	69599340	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	42073160	69599340	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium											7
Low	1		9		17				1		4	1
Below cutoff	1	8	17	12	2	12	8	9	11	4	13	9	8

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_198792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF548544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000087178 ⟹ ENSRNOP00000074097

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	45,238,126 - 45,304,946 (+)	Ensembl
Rnor_6.0 Ensembl	17	47,301,518 - 47,368,541 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090021 ⟹ ENSRNOP00000068777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	45,238,120 - 45,304,948 (+)	Ensembl
Rnor_6.0 Ensembl	17	47,302,272 - 47,364,209 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092051 ⟹ ENSRNOP00000069890

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	45,238,120 - 45,304,948 (+)	Ensembl
Rnor_6.0 Ensembl	17	47,301,511 - 47,368,553 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000095832 ⟹ ENSRNOP00000096759

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	45,238,120 - 45,255,889 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113182 ⟹ ENSRNOP00000091968

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	45,238,120 - 45,304,808 (+)	Ensembl

RefSeq Acc Id:

NM_198792 ⟹ NP_942087

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,238,087 - 45,304,948 (+)	NCBI
Rnor_6.0	17	47,301,512 - 47,368,543 (+)	NCBI
Rnor_5.0	17	56,120,328 - 56,185,444 (-)	NCBI
RGSC_v3.4	17	53,037,090 - 53,105,985 (+)	RGD
Celera	17	51,224,029 - 51,290,939 (-)	RGD

Sequence:

show sequence

GGTGATGCCAGGCATCCCTCATCCCCTCCTTTAACTGGACCTGCTGGGGAAGAAGGCACAGCAG
GAACCCTGCCACCTTTAGCCTGAGCCTGACCCAGAACTGGTCCAGCAGACAAATGGCAAGCAAA
AAACGTGAAGTCCAGCTACAGTCAGTCGTCAATAGTCAGAACTTGTGGGATGAGATGTTGCTGA
ACAAAGGCTTAACAGTGATTGATGTATACCAAGCCTGGTGTGGACCCTGCAAAGCCGTGCAAGC
TTTATTCAGAAAACTAAAAAATGAACTGAATGAAGATGAGCTTCTTCATTTTGTCGTTGCGGAA
GCTGACAGCATTGTGACTCTGCAGCCATTTAGAGATAAATGTGAGCCTGTGTTCCTCTTCAGTC
TTAATGGTAAAATTATTGCAAAGATTCAGGGTGCAAATGCACCACTTATCAATAGAAAAGTCAT
TGCATTGATAGATGAAGAGAAGAAAATTGCAGCAGGTGAAATGGCTCGTCCTCAGTATGTTGAA
ATTCCACTAGTAGACTCATTGGACGAAGAATATGGGGAAGTGCACTATGAAAGTAATGTGGAAG
TTTACAATATGGCAGTTATCAACCCTGATGCTGTACTCATGAGAAAAAATTTGGAAATTAAGGA
AAAAATAACCAAAGAAGGATTTATCATAGAAATACAGGAAAACATGCTTCTCCCCGAAGAGGTA
GCGAGGGAATTCTACAATCATATGATAGATGAGCCTGACTTTGAAGAGTTTGTATATTCTATGA
CAAACCGCCTAAGCTGTGTGCTCATTATATCTCAAGGAGAAGACACAGAGGTTATTGAGGAGGA
AGCTCTCCCTCAGTCTGATGATGAAGAAGAAGAAGAAGAAGAAGAAGTAGTAGAAGAACCTGAC
CCTTTGGAAGAGCCTCACGTTAGGTTTGCACCTATGCTGGTAAAGAAGAAACGGGACAGTTTGC
AAGAGTATATGGACCGACAACATATGTCTGATTACTGTCATGTCGAGGATGATGCGGTTAAGGT
GTCCAAGTTCATTGACATATTATTCCCTGATTTTAAAACCATGAAAAGCACGAATGTACAAAGG
ACACTAGGATTACTGTATCCAGAAGTCTGTGAGGAAGAGAAAGATAATGTGTTGGACATTATTC
AAAATGAAGGGTTCACTATATTGATGCAGAGGCAAGTCGTATTATCAGAGGAAGAGGCAAGAGC
AGTGTGCCACGTCCATGAGGATGAAGACTATTTTGATAATCTTATAGGATACATGTGCAGTAAT
AACTCTTATATCCTTGTTCTAATGAGGGAACATAGTGTGGAACGTTGGAAAGAGTTAATCGGGC
CTAAAACTGTTGAGGAGGCTTATGCATCTCATCCAGACAGTTTATGTGTACGGTTTGCTTCAGG
AAATTTTCCTGTCAACCAGTTCTATGGGAGCAGTTCAAAAGCAGCAGCTGAGACAGAAATAGAG
CATTTCTTTCCTCCTCAGAGTACGCTGGCATTGATTAAGCCTCACGTGTCACACAAAGAAAGAA
TGGAGATTCTGAAGGCCATTAGAGATGCAAGATTTGAGCTGACCCAGATGAAAGAAATGCACCT
GACTCCGGAGCATGCAAGCAAAGTTTATTTCAAAATAACAGGAAAAGATTTCTATAAAAATGTA
TTGGACGTCTTATCTTCGGGCATGTCAGTAGTCATGATTCTGACCAAGTGGAATGCTGTTGGAG
AATGGAGGCGAATGATGGGCCCAGTAGACCCAGAAGAAGCAAAACTGCTGTCTCCAAATTCCCT
CCGAGCCAGATATGGAATAGACGTTTTGAGAAATGCTGTCCATGGGGCATCTAACATGTCTGAA
GCAGCAACTGCCATTAGTAATGTGTTCACAGAGAGCAATTTTGAGAACTAGGACAAATACTAGA
TTCATAGAAACTCAATGAGATAATGAAGAAGTTTCATCACATAAAACCATGAGGCACAACTTCC
TGTAAAGAGTAAGAACAAAAATTTCTCCAAGAGAAACACACATGGAGATGAAAACTCGCATGGC
TATGCATGGTAACAATAAAAACTGTAACCCCCCAA

hide sequence

RefSeq Acc Id:

XM_017600636 ⟹ XP_017456125

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,237,422 - 45,304,948 (+)	NCBI
Rnor_6.0	17	47,300,932 - 47,368,543 (+)	NCBI

Sequence:

show sequence

GTGGGAATCCGAATATCATTTTGGCAGAACTTTTGTAACTCTAAACATTTAAATAGTTAAAATG
GCAGTGCTATGGGTCCAGTGCCTAGGTGGGAACGGAGGAAGGAGACCATGAGGATGAGACCATC
AGAGAACAATAGCGAAGGTGGAGAGTCAGCTCAGCAGGAAGGAAGGCCTGTTTTTGCTTCAATT
TGAGGGATTTGTACGCATATTGTAAGGCTTGGCTGATCCCCTAGGATTCAAAGCCTAGGAGAGA
GACTTCCAGCAGACAAATGGCAAGCAAAAAACGTGAAGTCCAGCTACAGTCAGTCGTCAATAGT
CAGAACTTGTGGGATGAGATGTTGCTGAACAAAGGCTTAACAGTGATTGATGTATACCAAGCCT
GGTGTGGACCCTGCAAAGCCGTGCAAGCTTTATTCAGAAAACTAAAAAATGAACTGAATGAAGA
TGAGCTTCTTCATTTTGTCGTTGCGGAAGCTGACAGCATTGTGACTCTGCAGCCATTTAGAGAT
AAATGTGAGCCTGTGTTCCTCTTCAGTCTTAATGGTAAAATTATTGCAAAGATTCAGGGTGCAA
ATGCACCACTTATCAATAGAAAAGTCATTGCATTGATAGATGAAGAGAAGAAAATTGCAGCAGG
TGAAATGGCTCGTCCTCAGTATGTTGAAATTCCACTAGTAGACTCATTGGACGAAGAATATGGG
GAAGTGCACTATGAAAGTAATGTGGAAGTTTACAATATGGCAGTTATCAACCCTGATGCTGTAC
TCATGAGAAAAAATTTGGAAATTAAGGAAAAAATAACCAAAGAAGGATTTATCATAGAAATACA
GGAAAACATGCTTCTCCCCGAAGAGGTAGCGAGGGAATTCTACAATCATATGATAGATGAGCCT
GACTTTGAAGAGTTTGTATATTCTATGACAAACCGCCTAAGCTGTGTGCTCATTATATCTCAAG
GAGAAGACACAGAGGTTATTGAGGAGGAAGCTCTCCCTCAGTCTGATGATGAAGAAGAAGAAGA
AGAAGAAGAAGTAGTAGAAGAACCTGACCCTTTGGAAGAGCCTCACGTTAGGTTTGCACCTATG
CTGGTAAAGAAGAAACGGGACAGTTTGCAAGAGTATATGGACCGACAACATATGTCTGATTACT
GTCATGTCGAGGATGATGCGGTTAAGGTGTCCAAGTTCATTGACATATTATTCCCTGATTTTAA
AACCATGAAAAGCACGAATGTACAAAGGACACTAGGATTACTGTATCCAGAAGTCTGTGAGGAA
GAGAAAGATAATGTGTTGGACATTATTCAAAATGAAGGGTTCACTATATTGATGCAGAGGCAAG
TCGTATTATCAGAGGAAGAGGCAAGAGCAGTGTGCCACGTCCATGAGGATGAAGACTATTTTGA
TAATCTTATAGGATACATGTGCAGTAATAACTCTTATATCCTTGTTCTAATGAGGGAACATAGT
GTGGAACGTTGGAAAGAGTTAATCGGGCCTAAAACTGTTGAGGAGGCTTATGCATCTCATCCAG
ACAGTTTATGTGTACGGTTTGCTTCAGGAAATTTTCCTGTCAACCAGTTCTATGGGAGCAGTTC
AAAAGCAGCAGCTGAGACAGAAATAGAGCATTTCTTTCCTCCTCAGAGTACGCTGGCATTGATT
AAGCCTCACGTGTCACACAAAGAAAGAATGGAGATTCTGAAGGCCATTAGAGATGCAAGATTTG
AGCTGACCCAGATGAAAGAAATGCACCTGACTCCGGAGCATGCAAGCAAAGTTTATTTCAAAAT
AACAGGAAAAGATTTCTATAAAAATGTATTGGACGTCTTATCTTCGGGCATGTCAGTAGTCATG
ATTCTGACCAAGTGGAATGCTGTTGGAGAATGGAGGCGAATGATGGGCCCAGTAGACCCAGAAG
AAGCAAAACTGCTGTCTCCAAATTCCCTCCGAGCCAGATATGGAATAGACGTTTTGAGAAATGC
TGTCCATGGGGCATCTAACATGTCTGAAGCAGCAACTGCCATTAGTAATGTGTTCACAGAGAGC
AATTTTGAGAACTAGGACAAATACTAGAAAACTCAATGAGATAATGAAGAAGTTTCATCACATA
AAACCATGAGGCACAACTTCCTGTAAAGAGTAAGAACAAAAATTTCTCCAAGAGAAACACACAT
GGAGATGAAAACTCGCATGGCTATGCATGGTAACAATAAAAACTGTAACCCCCCAA

hide sequence

RefSeq Acc Id:

XM_017600637 ⟹ XP_017456126

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,238,090 - 45,304,948 (+)	NCBI
Rnor_6.0	17	47,301,473 - 47,368,543 (+)	NCBI

Sequence:

show sequence

GGGCTGAACGTTGGTGTCTTTGCCTTTCCTTTTCCAGGGGGTGATGCCAGGCATCCCTCATCCC
CTCCTTTAACTGGACCTGCTGGGGAAGAAGGCACAGCAGGAACCCTGCCACCTTTAGCCTGAGC
CTGACCCAGAACTGGTCCAGCAGACAAATGGCAAGCAAAAAACGTGAAGTCCAGCTACAGTCAG
TCGTCAATAGTCAGAACTTGTGGGATGAGATGTTGCTGAACAAAGGCTTAACAGTGATTGATGT
ATACCAAGCCTGGTGTGGACCCTGCAAAGCCGTGCAAGCTTTATTCAGAAAACTAAAAAATGAA
CTGAATGAAGATGAGCTTCTTCATTTTGTCGTTAATGGTAAAATTATTGCAAAGATTCAGGGTG
CAAATGCACCACTTATCAATAGAAAAGTCATTGCATTGATAGATGAAGAGAAGAAAATTGCAGC
AGGTGAAATGGCTCGTCCTCAGTATGTTGAAATTCCACTAGTAGACTCATTGGACGAAGAATAT
GGGGAAGTGCACTATGAAAGTAATGTGGAAGTTTACAATATGGCAGTTATCAACCCTGATGCTG
TACTCATGAGAAAAAATTTGGAAATTAAGGAAAAAATAACCAAAGAAGGATTTATCATAGAAAT
ACAGGAAAACATGCTTCTCCCCGAAGAGGTAGCGAGGGAATTCTACAATCATATGATAGATGAG
CCTGACTTTGAAGAGTTTGTATATTCTATGACAAACCGCCTAAGCTGTGTGCTCATTATATCTC
AAGGAGAAGACACAGAGGTTATTGAGGAGGAAGCTCTCCCTCAGTCTGATGATGAAGAAGAAGA
AGAAGAAGAAGAAGTAGTAGAAGAACCTGACCCTTTGGAAGAGCCTCACGTTAGGTTTGCACCT
ATGCTGGTAAAGAAGAAACGGGACAGTTTGCAAGAGTATATGGACCGACAACATATGTCTGATT
ACTGTCATGTCGAGGATGATGCGGTTAAGGTGTCCAAGTTCATTGACATATTATTCCCTGATTT
TAAAACCATGAAAAGCACGAATGTACAAAGGACACTAGGATTACTGTATCCAGAAGTCTGTGAG
GAAGAGAAAGATAATGTGTTGGACATTATTCAAAATGAAGGGTTCACTATATTGATGCAGAGGC
AAGTCGTATTATCAGAGGAAGAGGCAAGAGCAGTGTGCCACGTCCATGAGGATGAAGACTATTT
TGATAATCTTATAGGATACATGTGCAGTAATAACTCTTATATCCTTGTTCTAATGAGGGAACAT
AGTGTGGAACGTTGGAAAGAGTTAATCGGGCCTAAAACTGTTGAGGAGGCTTATGCATCTCATC
CAGACAGTTTATGTGTACGGTTTGCTTCAGGAAATTTTCCTGTCAACCAGTTCTATGGGAGCAG
TTCAAAAGCAGCAGCTGAGACAGAAATAGAGCATTTCTTTCCTCCTCAGAGTACGCTGGCATTG
ATTAAGCCTCACGTGTCACACAAAGAAAGAATGGAGATTCTGAAGGCCATTAGAGATGCAAGAT
TTGAGCTGACCCAGATGAAAGAAATGCACCTGACTCCGGAGCATGCAAGCAAAGTTTATTTCAA
AATAACAGGAAAAGATTTCTATAAAAATGTATTGGACGTCTTATCTTCGGGCATGTCAGTAGTC
ATGATTCTGACCAAGTGGAATGCTGTTGGAGAATGGAGGCGAATGATGGGCCCAGTAGACCCAG
AAGAAGCAAAACTGCTGTCTCCAAATTCCCTCCGAGCCAGATATGGAATAGACGTTTTGAGAAA
TGCTGTCCATGGGGCATCTAACATGTCTGAAGCAGCAACTGCCATTAGTAATGTGTTCACAGAG
AGCAATTTTGAGAACTAGGACAAATACTAGAAAACTCAATGAGATAATGAAGAAGTTTCATCAC
ATAAAACCATGAGGCACAACTTCCTGTAAAGAGTAAGAACAAAAATTTCTCCAAGAGAAACACA
CATGGAGATGAAAACTCGCATGGCTATGCATGGTAACAATAAAAACTGTAACCCCCCAA

hide sequence

RefSeq Acc Id:

XM_039095975 ⟹ XP_038951903

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,237,424 - 45,304,948 (+)	NCBI

RefSeq Acc Id:

XM_039095976 ⟹ XP_038951904

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,237,025 - 45,304,948 (+)	NCBI

RefSeq Acc Id:

XM_039095977 ⟹ XP_038951905

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,237,022 - 45,304,948 (+)	NCBI

RefSeq Acc Id:

XM_039095978 ⟹ XP_038951906

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,244,665 - 45,304,948 (+)	NCBI

RefSeq Acc Id:

XM_039095979 ⟹ XP_038951907

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,238,090 - 45,273,980 (+)	NCBI

RefSeq Acc Id:

XR_005495310

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,238,090 - 45,304,948 (+)	NCBI

RefSeq Acc Id:

XR_005495311

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,238,090 - 45,304,948 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_942087	(Get FASTA)	NCBI Sequence Viewer
	XP_017456125	(Get FASTA)	NCBI Sequence Viewer
	XP_017456126	(Get FASTA)	NCBI Sequence Viewer
	XP_038951903	(Get FASTA)	NCBI Sequence Viewer
	XP_038951904	(Get FASTA)	NCBI Sequence Viewer
	XP_038951905	(Get FASTA)	NCBI Sequence Viewer
	XP_038951906	(Get FASTA)	NCBI Sequence Viewer
	XP_038951907	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97265	(Get FASTA)	NCBI Sequence Viewer
	AAQ12344	(Get FASTA)	NCBI Sequence Viewer
	Q715S9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_942087 ⟸ NM_198792

- UniProtKB:

F7EU06 (UniProtKB/TrEMBL), A0A8L2R1L1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASKKREVQLQSVVNSQNLWDEMLLNKGLTVIDVYQAWCGPCKAVQALFRKLKNELNEDELLHF
VVAEADSIVTLQPFRDKCEPVFLFSLNGKIIAKIQGANAPLINRKVIALIDEEKKIAAGEMARP
QYVEIPLVDSLDEEYGEVHYESNVEVYNMAVINPDAVLMRKNLEIKEKITKEGFIIEIQENMLL
PEEVAREFYNHMIDEPDFEEFVYSMTNRLSCVLIISQGEDTEVIEEEALPQSDDEEEEEEEEVV
EEPDPLEEPHVRFAPMLVKKKRDSLQEYMDRQHMSDYCHVEDDAVKVSKFIDILFPDFKTMKST
NVQRTLGLLYPEVCEEEKDNVLDIIQNEGFTILMQRQVVLSEEEARAVCHVHEDEDYFDNLIGY
MCSNNSYILVLMREHSVERWKELIGPKTVEEAYASHPDSLCVRFASGNFPVNQFYGSSSKAAAE
TEIEHFFPPQSTLALIKPHVSHKERMEILKAIRDARFELTQMKEMHLTPEHASKVYFKITGKDF
YKNVLDVLSSGMSVVMILTKWNAVGEWRRMMGPVDPEEAKLLSPNSLRARYGIDVLRNAVHGAS
NMSEAATAISNVFTESNFEN

hide sequence

RefSeq Acc Id:	XP_017456125 ⟸ XM_017600636
- Peptide Label:	isoform X1
- UniProtKB:	F7EU06 (UniProtKB/TrEMBL), A0A8L2R1L1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASKKREVQLQSVVNSQNLWDEMLLNKGLTVIDVYQAWCGPCKAVQALFRKLKNELNEDELLHF VVAEADSIVTLQPFRDKCEPVFLFSLNGKIIAKIQGANAPLINRKVIALIDEEKKIAAGEMARP QYVEIPLVDSLDEEYGEVHYESNVEVYNMAVINPDAVLMRKNLEIKEKITKEGFIIEIQENMLL PEEVAREFYNHMIDEPDFEEFVYSMTNRLSCVLIISQGEDTEVIEEEALPQSDDEEEEEEEEVV EEPDPLEEPHVRFAPMLVKKKRDSLQEYMDRQHMSDYCHVEDDAVKVSKFIDILFPDFKTMKST NVQRTLGLLYPEVCEEEKDNVLDIIQNEGFTILMQRQVVLSEEEARAVCHVHEDEDYFDNLIGY MCSNNSYILVLMREHSVERWKELIGPKTVEEAYASHPDSLCVRFASGNFPVNQFYGSSSKAAAE TEIEHFFPPQSTLALIKPHVSHKERMEILKAIRDARFELTQMKEMHLTPEHASKVYFKITGKDF YKNVLDVLSSGMSVVMILTKWNAVGEWRRMMGPVDPEEAKLLSPNSLRARYGIDVLRNAVHGAS NMSEAATAISNVFTESNFEN hide sequence

RefSeq Acc Id:	XP_017456126 ⟸ XM_017600637
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2R1L1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASKKREVQLQSVVNSQNLWDEMLLNKGLTVIDVYQAWCGPCKAVQALFRKLKNELNEDELLHF VVNGKIIAKIQGANAPLINRKVIALIDEEKKIAAGEMARPQYVEIPLVDSLDEEYGEVHYESNV EVYNMAVINPDAVLMRKNLEIKEKITKEGFIIEIQENMLLPEEVAREFYNHMIDEPDFEEFVYS MTNRLSCVLIISQGEDTEVIEEEALPQSDDEEEEEEEEVVEEPDPLEEPHVRFAPMLVKKKRDS LQEYMDRQHMSDYCHVEDDAVKVSKFIDILFPDFKTMKSTNVQRTLGLLYPEVCEEEKDNVLDI IQNEGFTILMQRQVVLSEEEARAVCHVHEDEDYFDNLIGYMCSNNSYILVLMREHSVERWKELI GPKTVEEAYASHPDSLCVRFASGNFPVNQFYGSSSKAAAETEIEHFFPPQSTLALIKPHVSHKE RMEILKAIRDARFELTQMKEMHLTPEHASKVYFKITGKDFYKNVLDVLSSGMSVVMILTKWNAV GEWRRMMGPVDPEEAKLLSPNSLRARYGIDVLRNAVHGASNMSEAATAISNVFTESNFEN hide sequence

RefSeq Acc Id:

ENSRNOP00000069890 ⟸ ENSRNOT00000092051

RefSeq Acc Id:

ENSRNOP00000068777 ⟸ ENSRNOT00000090021

RefSeq Acc Id:

ENSRNOP00000074097 ⟸ ENSRNOT00000087178

RefSeq Acc Id:	XP_038951905 ⟸ XM_039095977
- Peptide Label:	isoform X1
- UniProtKB:	F7EU06 (UniProtKB/TrEMBL), A0A8L2R1L1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951904 ⟸ XM_039095976
- Peptide Label:	isoform X1
- UniProtKB:	F7EU06 (UniProtKB/TrEMBL), A0A8L2R1L1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951903 ⟸ XM_039095975
- Peptide Label:	isoform X1
- UniProtKB:	F7EU06 (UniProtKB/TrEMBL), A0A8L2R1L1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951907 ⟸ XM_039095979
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038951906 ⟸ XM_039095978
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSRNOP00000091968 ⟸ ENSRNOT00000113182

RefSeq Acc Id:

ENSRNOP00000096759 ⟸ ENSRNOT00000095832

Protein Domains

Thioredoxin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q715S9-F1-model_v2	AlphaFold	Q715S9	1-587	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735069	AgrOrtholog
BioCyc Gene	G2FUF-9148	BioCyc
Ensembl Genes	ENSRNOG00000058285	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000068777.2	UniProtKB/TrEMBL
	ENSRNOP00000069890	ENTREZGENE
	ENSRNOP00000069890.1	UniProtKB/TrEMBL
	ENSRNOP00000074097.1	UniProtKB/TrEMBL
	ENSRNOP00000091968.1	UniProtKB/TrEMBL
	ENSRNOP00000096759.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000087178	ENTREZGENE
	ENSRNOT00000087178.2	UniProtKB/TrEMBL
	ENSRNOT00000090021.2	UniProtKB/TrEMBL
	ENSRNOT00000092051	ENTREZGENE
	ENSRNOT00000092051.2	UniProtKB/TrEMBL
	ENSRNOT00000095832.1	UniProtKB/TrEMBL
	ENSRNOT00000113182	ENTREZGENE
	ENSRNOT00000113182.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.141	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glutaredoxin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	NDK-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NDK-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Thioredoxin-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Thioredoxin_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Thioredoxin_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:364729	UniProtKB/TrEMBL
NCBI Gene	364729	ENTREZGENE
PANTHER	NME/NM23 FAMILY MEMBER 8	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	THIOREDOXIN DOMAIN-CONTAINING PROTEIN 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	NDK	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Thioredoxin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Nme8	PhenoGen
PROSITE	THIOREDOXIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	THIOREDOXIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	NDK	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF52833	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF54919	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6AG97_RAT	UniProtKB/TrEMBL
	A0A8I6GLR3_RAT	UniProtKB/TrEMBL
	A0A8L2R1L1	ENTREZGENE, UniProtKB/TrEMBL
	F7EU06	ENTREZGENE, UniProtKB/TrEMBL
	Q4V8P5_RAT	UniProtKB/TrEMBL
	Q715S9	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-17	Nme8	NME/NM23 family member 8	Txndc3	thioredoxin domain containing 3 (spermatozoa)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Txndc3	thioredoxin domain containing 3 (spermatozoa)		thioredoxin domain containing 3	Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM