Galnt13 (polypeptide N-acetylgalactosaminyltransferase 13) - Rat Genome Database

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Gene: Galnt13 (polypeptide N-acetylgalactosaminyltransferase 13) Rattus norvegicus
Analyze
Symbol: Galnt13
Name: polypeptide N-acetylgalactosaminyltransferase 13
RGD ID: 735044
Description: Predicted to enable polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation via serine and protein O-linked glycosylation via threonine. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT13 (polypeptide N-acetylgalactosaminyltransferase 13); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 17beta-estradiol 3-benzoate; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: galNAc-T13; polypeptide GalNAc transferase 13; pp-GaNTase 13; protein-UDP acetylgalactosaminyltransferase 13; T13; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 13; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8359,312,628 - 59,969,633 (+)NCBIGRCr8
mRatBN7.2338,903,695 - 39,560,683 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl338,974,490 - 39,558,803 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx342,323,978 - 42,915,414 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0350,908,809 - 51,500,243 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0348,693,629 - 49,285,129 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0339,967,056 - 40,625,144 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl340,038,336 - 40,624,530 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0345,059,017 - 45,711,493 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4336,065,457 - 36,657,842 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1335,961,828 - 36,554,210 (+)NCBI
Celera337,101,385 - 37,672,223 (+)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Hepatomegaly  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Cloning and characterization of a new human UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase, designated pp-GalNAc-T13, that is specifically expressed in neurons and synthesizes GalNAc alpha-serine/threonine antigen. Zhang Y, etal., J Biol Chem 2003 Jan 3;278(1):573-84. Epub 2002 Oct 28.
Additional References at PubMed
PMID:22186971  


Genomics

Comparative Map Data
Galnt13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8359,312,628 - 59,969,633 (+)NCBIGRCr8
mRatBN7.2338,903,695 - 39,560,683 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl338,974,490 - 39,558,803 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx342,323,978 - 42,915,414 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0350,908,809 - 51,500,243 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0348,693,629 - 49,285,129 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0339,967,056 - 40,625,144 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl340,038,336 - 40,624,530 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0345,059,017 - 45,711,493 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4336,065,457 - 36,657,842 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1335,961,828 - 36,554,210 (+)NCBI
Celera337,101,385 - 37,672,223 (+)NCBICelera
Cytogenetic Map3q12NCBI
GALNT13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382153,068,293 - 154,456,574 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2153,337,705 - 153,357,422 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl2153,871,922 - 154,453,979 (+)EnsemblGRCh38hg38GRCh38
GRCh372154,728,435 - 155,310,689 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362154,436,672 - 155,018,735 (+)NCBINCBI36Build 36hg18NCBI36
Celera2148,342,630 - 148,924,907 (+)NCBICelera
Cytogenetic Map2q23.3NCBI
HuRef2146,614,742 - 147,197,572 (+)NCBIHuRef
CHM1_12154,734,347 - 155,316,367 (+)NCBICHM1_1
T2T-CHM13v2.02153,520,817 - 154,909,642 (+)NCBIT2T-CHM13v2.0
Galnt13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39254,326,217 - 55,008,321 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl254,326,329 - 55,008,321 (+)EnsemblGRCm39 Ensembl
GRCm38254,436,211 - 55,118,309 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl254,436,317 - 55,118,309 (+)EnsemblGRCm38mm10GRCm38
MGSCv37254,288,798 - 54,970,155 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36254,251,773 - 54,933,130 (+)NCBIMGSCv36mm8
Celera256,207,641 - 56,879,923 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map230.77NCBI
Galnt13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544018,993,694 - 19,426,410 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544018,993,723 - 19,428,483 (+)NCBIChiLan1.0ChiLan1.0
GALNT13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21356,013,558 - 57,122,029 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B56,420,858 - 57,137,008 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B41,220,041 - 41,720,654 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B158,254,616 - 158,970,023 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B158,420,534 - 158,966,732 (+)Ensemblpanpan1.1panPan2
GALNT13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.136616,209 - 1,157,229 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl36616,080 - 1,153,700 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha36641,979 - 1,188,254 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.036621,995 - 1,166,863 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl36624,655 - 1,163,381 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.136628,056 - 1,177,243 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.036691,175 - 1,236,863 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.036704,947 - 1,281,541 (+)NCBIUU_Cfam_GSD_1.0
Galnt13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303117,600,365 - 118,103,451 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646923,512,250 - 23,987,274 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646923,514,031 - 24,016,991 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1561,440,656 - 62,047,336 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11561,440,625 - 62,045,229 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21569,038,007 - 69,107,768 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11039,242,005 - 39,846,075 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1039,515,438 - 39,842,432 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040159,688,356 - 160,311,197 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473211,588,347 - 12,097,650 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473211,583,286 - 12,175,101 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Galnt13
4845 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:253
Count of miRNA genes:166
Interacting mature miRNAs:190
Transcripts:ENSRNOT00000048804
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)32749462144188411Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)32749462150302886Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)33871036550302886Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat

Markers in Region
D3Mgh7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2339,454,637 - 39,454,780 (+)MAPPERmRatBN7.2
Rnor_6.0340,523,593 - 40,523,735NCBIRnor6.0
Rnor_5.0345,609,749 - 45,609,891UniSTSRnor5.0
RGSC_v3.4336,556,706 - 36,556,849RGDRGSC3.4
RGSC_v3.4336,556,707 - 36,556,849UniSTSRGSC3.4
RGSC_v3.1336,453,079 - 36,453,221RGD
Celera337,570,895 - 37,571,037UniSTS
RH 3.4 Map3492.7UniSTS
RH 3.4 Map3492.7RGD
RH 2.0 Map3241.3RGD
SHRSP x BN Map323.4998RGD
FHH x ACI Map327.9799RGD
Cytogenetic Map3q12UniSTS
RH139033  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2339,542,058 - 39,542,183 (+)MAPPERmRatBN7.2
Rnor_6.0340,610,803 - 40,610,927NCBIRnor6.0
Rnor_5.0345,697,152 - 45,697,276UniSTSRnor5.0
RGSC_v3.4336,644,109 - 36,644,233UniSTSRGSC3.4
Celera337,658,492 - 37,658,616UniSTS
RH 3.4 Map3492.6UniSTS
Cytogenetic Map3q12UniSTS
AI008709  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01872,334,056 - 72,334,284NCBIRnor5.0
Rnor_5.0345,614,428 - 45,614,617NCBIRnor5.0
Rnor_5.01875,992,053 - 75,992,281NCBIRnor5.0
RGSC_v3.4336,560,849 - 36,561,037UniSTSRGSC3.4
RGSC_v3.41876,893,048 - 76,893,275UniSTSRGSC3.4
Celera337,575,429 - 37,575,617UniSTS
Celera1871,918,312 - 71,918,539UniSTS
RH 3.4 Map18812.7UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map18q12.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 39 2
Low 33 4 4 4 1 1 35 33 31 2 1
Below cutoff 2 10 28 20 11 20 6 6 1 5 5 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_199106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY371923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000048804   ⟹   ENSRNOP00000042772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl338,974,588 - 39,555,794 (+)Ensembl
Rnor_6.0 Ensembl340,038,336 - 40,624,530 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111296   ⟹   ENSRNOP00000084878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl338,974,490 - 39,558,803 (+)Ensembl
RefSeq Acc Id: NM_199106   ⟹   NP_954537
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8359,383,516 - 59,964,799 (+)NCBI
mRatBN7.2338,974,490 - 39,555,794 (+)NCBI
Rnor_6.0340,038,336 - 40,624,536 (+)NCBI
Rnor_5.0345,059,017 - 45,711,493 (+)NCBI
RGSC_v3.4336,065,457 - 36,657,842 (+)RGD
Celera337,101,385 - 37,672,223 (+)RGD
Sequence:
RefSeq Acc Id: XM_017591674   ⟹   XP_017447163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8359,312,732 - 59,959,772 (+)NCBI
mRatBN7.2338,903,695 - 39,555,354 (+)NCBI
Rnor_6.0339,967,056 - 40,624,056 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591675   ⟹   XP_017447164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8359,312,732 - 59,969,633 (+)NCBI
mRatBN7.2338,903,696 - 39,560,683 (+)NCBI
Rnor_6.0339,967,058 - 40,625,144 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591676   ⟹   XP_017447165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8359,312,728 - 59,969,633 (+)NCBI
mRatBN7.2338,903,697 - 39,560,683 (+)NCBI
Rnor_6.0339,967,060 - 40,625,144 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104816   ⟹   XP_038960744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8359,312,732 - 59,959,772 (+)NCBI
mRatBN7.2338,903,695 - 39,555,354 (+)NCBI
RefSeq Acc Id: XM_039104817   ⟹   XP_038960745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8359,312,732 - 59,959,772 (+)NCBI
mRatBN7.2338,903,695 - 39,555,354 (+)NCBI
RefSeq Acc Id: XM_039104818   ⟹   XP_038960746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8359,312,735 - 59,850,592 (+)NCBI
mRatBN7.2338,903,697 - 39,428,779 (+)NCBI
RefSeq Acc Id: XM_063283608   ⟹   XP_063139678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8359,312,628 - 59,959,772 (+)NCBI
RefSeq Acc Id: XM_063283609   ⟹   XP_063139679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8359,312,734 - 59,969,633 (+)NCBI
RefSeq Acc Id: XM_063283610   ⟹   XP_063139680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8359,312,734 - 59,955,923 (+)NCBI
RefSeq Acc Id: XM_063283611   ⟹   XP_063139681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8359,312,735 - 59,850,592 (+)NCBI
RefSeq Acc Id: NP_954537   ⟸   NM_199106
- UniProtKB: Q6UE39 (UniProtKB/Swiss-Prot),   A6JF40 (UniProtKB/TrEMBL),   A0A8L2QKT0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447163   ⟸   XM_017591674
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GB66 (UniProtKB/TrEMBL),   A0A8L2QKT0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447164   ⟸   XM_017591675
- Peptide Label: isoform X2
- UniProtKB: A0A8L2QKT0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447165   ⟸   XM_017591676
- Peptide Label: isoform X3
- UniProtKB: Q6UE39 (UniProtKB/Swiss-Prot),   A6JF40 (UniProtKB/TrEMBL),   A0A8L2QKT0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000042772   ⟸   ENSRNOT00000048804
RefSeq Acc Id: XP_038960744   ⟸   XM_039104816
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GB66 (UniProtKB/TrEMBL),   A0A8L2QKT0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960745   ⟸   XM_039104817
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GB66 (UniProtKB/TrEMBL),   A0A8L2QKT0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960746   ⟸   XM_039104818
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000084878   ⟸   ENSRNOT00000111296
RefSeq Acc Id: XP_063139678   ⟸   XM_063283608
- Peptide Label: isoform X1
- UniProtKB: A0A8L2QKT0 (UniProtKB/TrEMBL),   A0A8I6GB66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139679   ⟸   XM_063283609
- Peptide Label: isoform X3
- UniProtKB: Q6UE39 (UniProtKB/Swiss-Prot),   A0A8L2QKT0 (UniProtKB/TrEMBL),   A6JF40 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139680   ⟸   XM_063283610
- Peptide Label: isoform X4
- UniProtKB: A0A8L2QKT0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139681   ⟸   XM_063283611
- Peptide Label: isoform X5
Protein Domains
Ricin B lectin   Ricin B-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6UE39-F1-model_v2 AlphaFold Q6UE39 1-556 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735044 AgrOrtholog
BioCyc Gene G2FUF-49696 BioCyc
BioCyc Pathway PWY-7433 [mucin core 1 and core 2 O-glycosylation] BioCyc
  PWY-7435 [mucin core 3 and core 4 O-glycosylation] BioCyc
BioCyc Pathway Image PWY-7433 BioCyc
  PWY-7435 BioCyc
Ensembl Genes ENSRNOG00000005335 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00055001533 UniProtKB/Swiss-Prot
  ENSRNOG00060007989 UniProtKB/Swiss-Prot
  ENSRNOG00065008243 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000048804.5 UniProtKB/TrEMBL
  ENSRNOT00000111296.1 UniProtKB/TrEMBL
  ENSRNOT00055002491 UniProtKB/Swiss-Prot
  ENSRNOT00060013254 UniProtKB/Swiss-Prot
  ENSRNOT00065013110 UniProtKB/Swiss-Prot
Gene3D-CATH 2.80.10.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GalNAc-T UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_trans_2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:311039 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 311039 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Galnt13 PhenoGen
PROSITE RICIN_B_LECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005335 RatGTEx
  ENSRNOG00055001533 RatGTEx
  ENSRNOG00060007989 RatGTEx
  ENSRNOG00065008243 RatGTEx
SMART RICIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50370 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6GB66 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QKT0 ENTREZGENE, UniProtKB/TrEMBL
  A6JF40 ENTREZGENE, UniProtKB/TrEMBL
  A6JF41_RAT UniProtKB/TrEMBL
  GLT13_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-21 Galnt13  polypeptide N-acetylgalactosaminyltransferase 13  Galnt13  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-17 Galnt13  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)  Galnt13  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Galnt13  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13  T13    Symbol updated 1299863 APPROVED