Ank (progressive ankylosis) - Rat Genome Database

Name: Ank
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Ank (progressive ankylosis) Mus musculus

Analyze

Symbol:

Ank

Name:

progressive ankylosis

RGD ID:

734406

MGI Page

MGI

Description:

Enables inorganic diphosphate transmembrane transporter activity. Involved in several processes, including cementum mineralization; diphosphate metabolic process; and inhibition of non-skeletal tissue mineralization. Acts upstream of or within regulation of bone mineralization. Located in plasma membrane. Is active in extracellular region. Is expressed in several structures, including bone; connective tissue; olfactory epithelium; telencephalon; and vibrissa follicle. Used to study craniometaphyseal dysplasia. Human ortholog(s) of this gene implicated in autosomal dominant craniometaphyseal dysplasia and chondrocalcinosis. Orthologous to human ANKH (ANKH inorganic pyrophosphate transport regulator).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Ankh; D15Ertd221; D15Ertd221e; fn54 protein; mKIAA1581; progressive ankylosis protein

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	27,466,763 - 27,594,995 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	27,466,763 - 27,594,995 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	27,466,677 - 27,594,909 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	27,466,677 - 27,594,909 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	27,396,432 - 27,524,664 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	27,411,402 - 27,539,630 (+)	NCBI		MGSCv36	mm8
Celera	15	28,188,363 - 28,342,822 (+)	NCBI		Celera
Cytogenetic Map	15	B1	NCBI
cM Map	15	10.23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

arthritis (IMP)

autosomal dominant craniometaphyseal dysplasia (ISO)

chondrocalcinosis (ISO)

Chondrocalcinosis 2 (ISO)

Craniofacial Abnormalities (ISO)

craniometaphyseal dysplasia (IAGP)

endometriosis (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorders (ISO)

Tooth Abnormalities (ISO)

visual epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-diaminotoluene (EXP)

2,6-dinitrotoluene (ISO)

2-hydroxypropanoic acid (ISO)

3,3',4,4',5-pentachlorobiphenyl (ISO)

3-methylcholanthrene (EXP)

4,4'-sulfonyldiphenol (ISO)

7,12-dimethyltetraphene (ISO)

8-Br-cAMP (ISO)

acetamide (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (ISO)

amphetamine (ISO)

Aroclor 1254 (EXP)

arsane (ISO)

arsenic atom (ISO)

benzene (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

buspirone (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

chlordecone (EXP)

clofibrate (EXP)

copper atom (ISO)

copper(0) (ISO)

diethylstilbestrol (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

ethanol (EXP)

fenthion (EXP)

flavonoids (ISO)

flutamide (ISO)

folic acid (EXP)

fulvestrant (ISO)

genistein (EXP)

irinotecan (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methidathion (EXP)

methotrexate (ISO)

nefazodone (ISO)

nickel sulfate (ISO)

nimesulide (ISO)

oxaliplatin (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (EXP)

phenformin (ISO)

pirinixic acid (EXP)

progesterone (EXP)

propanal (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sulforaphane (ISO)

tamoxifen (EXP)

testosterone (ISO)

tetrachloromethane (EXP)

thapsigargin (ISO)

thioacetamide (ISO)

topotecan (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

valproic acid (EXP,ISO)

vinclozolin (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ATP export (ISO)

bone mineralization (IDA,IMP)

calcium ion homeostasis (IMP)

cementum mineralization (IDA,IMP)

diphosphate metabolic process (IDA,IMP)

gene expression (IDA,IMP)

inhibition of non-skeletal tissue mineralization (IDA,IMP)

inorganic diphosphate transport (IMP)

muscle cell cellular homeostasis (IMP)

phosphate ion homeostasis (IMP)

phosphate ion transmembrane transport (IEA)

phosphate ion transport (IEA)

regulation of bone mineralization (IMP)

response to sodium phosphate (IMP)

Cellular Component

extracellular region (IMP)

membrane (IDA,ISO)

plasma membrane (IDA)

Molecular Function

inorganic diphosphate transmembrane transporter activity (IBA,IDA,ISO)

inorganic phosphate transmembrane transporter activity (IBA,ISO)

phosphate ion transmembrane transporter activity (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal articular cartilage morphology (IAGP)

abnormal auditory bulla morphology (IAGP)

abnormal basioccipital bone morphology (IAGP)

abnormal bone mineralization (IAGP)

abnormal bone structure (IAGP)

abnormal cartilage morphology (IAGP)

abnormal cementum morphology (IAGP)

abnormal chondrocyte morphology (IAGP)

abnormal circulating enzyme level (IAGP)

abnormal cranial foramen morphology (IAGP)

abnormal craniofacial bone morphology (IAGP)

abnormal cranium morphology (IAGP)

abnormal digit morphology (IAGP)

abnormal femur morphology (IAGP)

abnormal foramen magnum morphology (IAGP)

abnormal gait (IAGP)

abnormal intervertebral disk morphology (IAGP)

abnormal ion homeostasis (IAGP)

abnormal joint morphology (IAGP)

abnormal ligament morphology (IAGP)

abnormal limb morphology (IAGP)

abnormal middle ear ossicle morphology (IAGP)

abnormal osteoblast physiology (IAGP)

abnormal osteoclast differentiation (IAGP)

abnormal posture (IAGP)

abnormal sesamoid bone of gastrocnemius morphology (IAGP)

abnormal skeleton morphology (IAGP)

abnormal synovial joint cavity morphology (IAGP)

abnormal temporal bone petrous part morphology (IAGP)

abnormal tendon morphology (IAGP)

abnormal tooth hard tissue morphology (IAGP)

abnormal transverse acetabular ligament morphology (IAGP)

absent paranasal sinus (IAGP)

arthritis (IAGP)

calcified aorta (IAGP)

calcified intervertebral disk (IAGP)

calcified joint (IAGP)

calcified tendon (IAGP)

club-shaped femur (IAGP)

craniofacial hyperostosis (IAGP)

decreased body length (IAGP)

decreased body weight (IAGP)

decreased compact bone thickness (IAGP)

decreased grip strength (IAGP)

decreased joint mobility (IAGP)

decreased trabecular bone connectivity density (IAGP)

decreased trabecular bone volume (IAGP)

foramen magnum stenosis (IAGP)

fused joints (IAGP)

fusion of middle ear ossicles (IAGP)

hyperostosis (IAGP)

increased bone mineral content (IAGP)

increased bone mineral density (IAGP)

increased circulating alkaline phosphatase level (IAGP)

increased diameter of femur (IAGP)

incudomalleolar fusion (IAGP)

kyphosis (IAGP)

mandibular hyperostosis (IAGP)

premature death (IAGP)

reduced female fertility (IAGP)

reduced male fertility (IAGP)

short femur (IAGP)

thick neurocranium (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Role of the mouse ank gene in control of tissue calcification and arthritis.	Ho AM, etal., Science 2000 Jul 14;289(5477):265-70.
2.	Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development.	Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	MGD IEA	MGD IEA
5.	Heterozygous mutations in ANKH, the human ortholog of the mouse progressive ankylosis gene, result in craniometaphyseal dysplasia.	Nurnberg P, etal., Nat Genet 2001 May;28(1):37-41.
6.	Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries.	Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
7.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
9.	Mutations in ANKH cause chondrocalcinosis.	Pendleton A, etal., Am J Hum Genet 2002 Oct;71(4):933-40. Epub 2002 Sep 20.
10.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Progressive ankylosis (Ank) protein is expressed by neurons and Ank immunohistochemical reactivity is increased by limbic seizures.	Yepes M, etal., Lab Invest 2003 Jul;83(7):1025-32.

Additional References at PubMed

PMID:1659102	PMID:2541245	PMID:2805429	PMID:3004514	PMID:3175755	PMID:3190783	PMID:3213824	PMID:6095872	PMID:7276519	PMID:8889548	PMID:9002021	PMID:9635372
PMID:10349636	PMID:10813297	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11326338	PMID:11953986	PMID:12056852	PMID:12477932	PMID:12817751	PMID:15039209
PMID:15489334	PMID:15611280	PMID:15625282	PMID:15833911	PMID:16141072	PMID:16141073	PMID:16602821	PMID:16869722	PMID:17186460	PMID:17560335	PMID:17638573	PMID:17762177
PMID:17950726	PMID:18187567	PMID:18331719	PMID:18728347	PMID:19257826	PMID:19338977	PMID:19419319	PMID:19910700	PMID:20200976	PMID:20200993	PMID:21149338	PMID:21389671
PMID:21488756	PMID:21490328	PMID:21677750	PMID:21788370	PMID:21856950	PMID:21873635	PMID:22003394	PMID:22318228	PMID:22421045	PMID:22675556	PMID:23160629	PMID:23390527
PMID:23895994	PMID:24663682	PMID:25428889	PMID:28135291	PMID:28286238	PMID:28866368	PMID:29174564	PMID:29313816	PMID:30356088	PMID:31059863	PMID:31064775	PMID:32188494
PMID:32224162	PMID:32554809	PMID:32639996	PMID:35147247

Genomics

Comparative Map Data

Ank
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	27,466,763 - 27,594,995 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	27,466,763 - 27,594,995 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	27,466,677 - 27,594,909 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	27,466,677 - 27,594,909 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	27,396,432 - 27,524,664 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	27,411,402 - 27,539,630 (+)	NCBI		MGSCv36	mm8
Celera	15	28,188,363 - 28,342,822 (+)	NCBI		Celera
Cytogenetic Map	15	B1	NCBI
cM Map	15	10.23	NCBI

ANKH
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	14,704,800 - 14,871,778 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	5	14,704,800 - 14,871,778 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	14,704,909 - 14,871,887 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	14,762,019 - 14,924,876 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	14,762,018 - 14,924,876	NCBI
Celera	5	14,728,867 - 14,895,594 (-)	NCBI		Celera
Cytogenetic Map	5	p15.2	NCBI
HuRef	5	14,677,712 - 14,844,731 (-)	NCBI		HuRef
CHM1_1	5	14,704,654 - 14,871,772 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	14,644,272 - 14,811,218 (-)	NCBI		T2T-CHM13v2.0

Ankh
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	78,153,027 - 78,280,181 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	78,153,026 - 78,280,187 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	85,240,253 - 85,367,690 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	83,361,989 - 83,489,422 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	78,394,033 - 78,521,764 (+)	NCBI	Rnor_WKY
Rnor_6.0	2	80,131,563 - 80,256,948 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	80,131,563 - 80,256,954 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	99,796,579 - 99,921,964 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	79,289,427 - 79,418,518 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	79,234,387 - 79,363,480 (+)	NCBI
Celera	2	73,782,876 - 73,934,310 (+)	NCBI		Celera
Cytogenetic Map	2	q22	NCBI

Ankh
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	3,992,671 - 4,130,754 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955426	3,992,671 - 4,130,754 (-)	NCBI	ChiLan1.0	ChiLan1.0

ANKH
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	5	13,098,133 - 13,258,900 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	15,014,019 - 15,175,467 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	14,849,497 - 15,015,206 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	14,855,914 - 14,917,729 (-)	Ensembl	panpan1.1		panPan2

ANKH
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	88,149,250 - 88,263,926 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	88,149,257 - 88,272,464 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	87,670,608 - 87,785,793 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	88,877,936 - 88,993,145 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	88,877,991 - 88,999,454 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	88,304,136 - 88,419,117 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	88,546,753 - 88,661,820 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	89,403,928 - 89,519,108 (+)	NCBI		UU_Cfam_GSD_1.0

Ankh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	232,927,281 - 233,060,862 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936665	1,520,800 - 1,653,816 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936665	1,520,800 - 1,654,388 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ANKH
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	4,105,165 - 4,271,170 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	4,095,582 - 4,271,073 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	4,444,997 - 4,610,979 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ANKH
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	14,401,681 - 14,559,342 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	14,408,116 - 14,559,454 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666064	13,973,098 - 14,126,427 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ankh
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624751	11,716,369 - 11,847,758 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624751	11,716,369 - 11,847,726 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ank
4755 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	753
Count of miRNA genes:	471
Interacting mature miRNAs:	569
Transcripts:	ENSMUST00000022875, ENSMUST00000134004
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300594	Eae2_m	susceptibility to experimental allergic encephalomyelitis 2 (mouse)			Not determined		15	1	31218736	Mouse
4141358	Ath22_m	atherosclerosis 22 (mouse)			Not determined			3464652	37464652	Mouse
10401902	Sicd2_m	seizure-induced cell death 2 (mouse)			Not determined		15	3474389	71197538	Mouse
4141952	W3q7_m	weight 3 weeks QTL 7 (mouse)			Not determined			3489694	78601286	Mouse
4142252	Tailaq4_m	tail length adjusted QTL 4 (mouse)			Not determined			3489694	78601286	Mouse
4142448	Tailq6_m	tail length QTL 6 (mouse)			Not determined			3489694	78601286	Mouse
1357559	Scfq2_m	subcutaneous fat pad weight QTL 2 (mouse)			Not determined		15	3489694	78601286	Mouse
1357659	Epfpq4_m	epididymal fat percentage QTL 4 (mouse)			Not determined		15	3489694	78601286	Mouse
11252136	Modvl4_m	modifier of vacuolated lens (mouse)					15	5620494	39620614	Mouse
26884409	Bzwq16_m	bi-zygomatic width QTL 16, 16 week (mouse)					15	6129481	38000244	Mouse
26884384	Skwq12_m	skull length QTL 12, 16 week (mouse)					15	6129481	50763396	Mouse
26884387	Skwq8_m	skull length QTL 8, 10 week (mouse)					15	6129481	68271849	Mouse
26884412	Bzwq10_m	bi-zygomatic width QTL 10, 10 week (mouse)					15	6129481	71471849	Mouse
26884417	Bzwq4_m	bi-zygomatic width QTL 4, 5 week (mouse)					15	6129481	72471849	Mouse
27226786	Feml11_m	femur length 11, 5 week (mouse)					15	6129481	75871849	Mouse
27095932	Ulnl11_m	ulna length 11, 16 week (mouse)					15	6129481	76384200	Mouse
27226717	Tibw4_m	tibia width 4, proximal, 10 week (mouse)					15	6129481	78684200	Mouse
27226734	Tibmd5_m	tibia midshaft diameter 5, 10 week (mouse)					15	6129481	86684201	Mouse
26884442	Sklq6_m	skull length QTL 6, 5 week (mouse)					15	6129481	100797881	Mouse
26884429	Zlq6_m	zygomatic length QTL 6, 10 week (mouse)					15	6829481	44963396	Mouse
27226721	Tibw8_m	tibia width 8, proximal, 16 week (mouse)					15	6929481	75871849	Mouse
27226773	Tibl16_m	tibia length 16, 10 week (mouse)					15	6929481	75871849	Mouse
27226777	Tibl8_m	tibia length 8, 5 week (mouse)					15	6929481	84584201	Mouse
27095940	Ulnl8_m	ulna length 8, 10 week (mouse)					15	7229481	55263396	Mouse
27226759	Feml17_m	femur length 17, 10 week (mouse)					15	7629481	55263396	Mouse
27226755	Feml22_m	femur length 22, 16 week (mouse)					15	7629481	59271849	Mouse
27095922	Pglq11_m	pelvic girdle length QTL 11, 10 week (mouse)					15	8129484	38763395	Mouse
26884439	Sklq11_m	skull length QTL 11, 10 week (mouse)					15	8129484	47663396	Mouse
10412172	Habiir5_m	hyperoxic acute lung injury imprinted region 5 (mouse)			Not determined		15	9273022	43311880	Mouse
4140994	Shali3_m	survival time to hyperoxic acute lung injury 3 (mouse)			Not determined			9273022	43311880	Mouse
4141192	Ssrq2_m	stress response QTL 2 (mouse)			Not determined			9273022	56186850	Mouse
1301433	Rapop5_m	radiation-induced apoptosis 5 (mouse)			Not determined		15	9273022	79474762	Mouse
1357526	Hyplip2_m	hyperlipidemia 2 (mouse)			Not determined		15	12402203	102896555	Mouse
1301020	Pheo_m	pheomelanin (mouse)			Not determined		15	13847006	47847148	Mouse
1302165	Yv_m	yellow value (mouse)			Not determined		15	13847006	47847148	Mouse
4141423	Nstr2_m	nerve sheath tumor resistance QTL 2 (mouse)			Not determined			14927587	48927756	Mouse
1301951	Eila3_m	ethanol induced locomotor activity 3 (mouse)			Not determined		15	14927587	48927756	Mouse
1302007	Bbaa14_m	B.burgdorferi-associated arthritis 14 (mouse)			Not determined		15	14927587	48927756	Mouse
1301499	Bdln2_m	body length 2 (mouse)			Not determined		15	15645343	49645470	Mouse
12859288	Criq1_m	Citrobacter rodentium infection QTL 1 (mouse)					15	16033954	50033954	Mouse
26884423	Zlq10_m	zygomatic length QTL 10, 16 week (mouse)					15	20600086	50763396	Mouse
13801027	Toa1_m	testicular oocyte appearance 1 (mouse)					15	20807352	28494067	Mouse
14928313	Manh78_m	mandible shape 78 (mouse)					15	21484641	55484641	Mouse
12859289	Criq3_m	Citrobacter rodentium infection QTL 3 (mouse)					15	22593765	56593765	Mouse
4142160	Femwf10_m	femur work to failure 10 (mouse)			Not determined			22893014	56893160	Mouse
1301557	Bbaa22_m	B.burgdorferi-associated arthritis 22 (mouse)			Not determined		15	24462572	58462805	Mouse
1300967	Bdt6_m	bone density traits 6 (mouse)			Not determined		15	25295806	59295928	Mouse
4141409	Radsvq1_m	radiation sensitivity QTL 1 (mouse)			Not determined			25484978	59484978	Mouse
1301760	Dob9_m	dietary obesity 9 (mouse)			Body fat amount	adiposity index	15	26035680	37781301	Mouse
1300772	Bglq16_m	body growth late QTL 16 (mouse)			Not determined		15	26311780	60311880	Mouse
1301345	Bgeq14_m	body growth early QTL 14 (mouse)			Not determined		15	26311780	60311880	Mouse
1357514	Mbis3_m	Mycobacterium bovis-induced systemic lupus erythematosus 3 (mouse)			Not determined		16	26311780	60311880	Mouse
1301406	Egrd2_m	early growth rate (mouse)			Not determined		15	26311780	60311880	Mouse
27226800	Scvln20_m	sacral vertebrae length 2, 16 week (mouse)					15	26600086	66371849	Mouse
14700788	Mencq9_m	meniscus calcification QTL 9 (mouse)					15	27316086	27624086	Mouse

Markers in Region

MT3505

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	15	27,582,331 - 27,582,471	UniSTS	GRCm38
MGSCv37	15	27,512,086 - 27,512,226	UniSTS	GRCm37
Celera	15	28,330,244 - 28,330,384	UniSTS
Cytogenetic Map	15	B1	UniSTS
cM Map	15	15.6	UniSTS
Whitehead Genetic	15	10.9	UniSTS

D15Mit164.2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	15	27,582,231 - 27,582,341	UniSTS	GRCm38
MGSCv37	15	27,511,986 - 27,512,096	UniSTS	GRCm37
Celera	15	28,330,144 - 28,330,254	UniSTS
Cytogenetic Map	15	B1	UniSTS
cM Map	15	15.6	UniSTS
cM Map	15		UniSTS
Whitehead Genetic	15	10.9	UniSTS

D15Mit20

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	15	27,582,373 - 27,582,523	UniSTS	GRCm38
MGSCv37	15	27,512,128 - 27,512,278	UniSTS	GRCm37
Celera	15	28,330,286 - 28,330,436	UniSTS
Cytogenetic Map	15	B1	UniSTS
cM Map	15	14.0	UniSTS
Whitehead Genetic	15	10.9	UniSTS
Whitehead/MRC_RH	15	258.89	UniSTS
Whitehead_YAC	15		UniSTS

D15Mit94

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	15	27,443,957 - 27,444,106	UniSTS	GRCm38
MGSCv37	15	27,373,712 - 27,373,861	UniSTS	GRCm37
Celera	15	28,191,810 - 28,191,957	UniSTS
Cytogenetic Map	15	B1	UniSTS
cM Map	15	29.0	UniSTS
Whitehead Genetic	15	32.8	UniSTS
Whitehead_YAC	15		UniSTS

C78987

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	15	27,593,881 - 27,593,967	UniSTS	GRCm38
MGSCv37	15	27,523,636 - 27,523,722	UniSTS	GRCm37
Celera	15	28,341,794 - 28,341,880	UniSTS
Cytogenetic Map	15	B1	UniSTS
cM Map	15	14.4	UniSTS
Whitehead/MRC_RH	15	254.64	UniSTS

UniSTS:237276

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	15	27,499,656 - 27,499,983	UniSTS	GRCm38
MGSCv37	15	27,429,411 - 27,429,738	UniSTS	GRCm37
Celera	15	28,247,543 - 28,247,870	UniSTS
Cytogenetic Map	15	B1	UniSTS
cM Map	15	14.4	UniSTS

RH126011

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	15	27,509,354 - 27,509,589	UniSTS	GRCm38
MGSCv37	15	27,439,109 - 27,439,344	UniSTS	GRCm37
Celera	15	28,257,331 - 28,257,566	UniSTS
Cytogenetic Map	15	B1	UniSTS
cM Map	15	8.9	UniSTS
Whitehead/MRC_RH	15	257.67	UniSTS

RH126477

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	15	27,594,159 - 27,594,404	UniSTS	GRCm38
MGSCv37	15	27,523,914 - 27,524,159	UniSTS	GRCm37
Celera	15	28,342,072 - 28,342,317	UniSTS
Cytogenetic Map	15	B1	UniSTS
cM Map	15	14.4	UniSTS
cM Map	15	8.9	UniSTS
Whitehead/MRC_RH	15	257.67	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_020332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC158955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF274752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH005531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK083135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK086014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK148070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW049351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC042644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC054379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ832285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000022875 ⟹ ENSMUSP00000022875

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	27,466,763 - 27,594,995 (+)	Ensembl
GRCm38.p6 Ensembl	15	27,466,677 - 27,594,909 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000134004

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	27,571,533 - 27,594,538 (+)	Ensembl
GRCm38.p6 Ensembl	15	27,571,447 - 27,594,452 (+)	Ensembl

RefSeq Acc Id:

NM_020332 ⟹ NP_065065

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	15	27,466,763 - 27,594,995 (+)	NCBI
GRCm38	15	27,466,677 - 27,594,909 (+)	ENTREZGENE
MGSCv37	15	27,396,432 - 27,524,664 (+)	RGD
Celera	15	28,214,608 - 28,342,822 (+)	NCBI
cM Map	15		ENTREZGENE

Sequence:

show sequence

AGAGCGCTTATAATGGAGCCGCTGTCAGCAGAAGCCTCTGCTGCCGCCGCCGCCGCCGCCGCCG
CTGCCGCCGCTGCCGTCCCTGTCCCTCCTCTCTTTCTCCCCGGCAGATCTTTGTTGTGTGGGAG
GGCAGCGGGGATGGACTTGAGCTCGCGGCTCTCCTGCTAGAGCAGCAGCGCTTGGAGAGGACGC
CGCCGCCGCCGCGAGCAGCCGCCGCCCCAGGCCCCGCCGGCCGCGGCCTCCGTCCCCGCGCTGC
GCTCCGCGCGCCTCCCAGCACAGTGCCCTCGCGGCGGCAGATGAGTGTGGGGTCAGCCCACGGC
GGGGACTATGGTGAAATTCCCGGCGCTCACGCACTACTGGCCCCTGATCCGGTTCCTGGTGCCC
CTCGGCATCACCAACATAGCCATCGACTTCGGGGAGCAGGCCTTGAACCGGGGCATCGCTGCAG
TCAAGGAGGATGCAGTAGAAATGCTGGCCAGCTACGGGCTGGCGTATTCTTTGATGAAGTTCTT
CACGGGGCCCATGAGTGACTTCAAAAATGTGGGCCTGGTGTTCGTGAACAGCAAGAGAGACAGG
GCCAAAGCCGTCCTCTGCATGGTGGTGGCCGGTGCCATCGCTGCCGTCTTCCACACCCTGATAG
CCTACAGTGACTTAGGGTACTACATCATCAACAAGCTGCATCATGTGGATGAGTCTGTGGGGAG
CAAAACACGAAGGGCCTTCCTGTATCTCGCTGCCTTCCCTTTTATGGATGCCATGGCGTGGACT
CATGCTGGCATTCTCTTAAAACACAAATACAGTTTCCTGGTGGGATGTGCCTCAATCTCAGATG
TCATAGCTCAGGTTGTTTTCGTAGCCATTTTGCTTCACAGTCACCTGGAATGCCGAGAACCGCT
GCTCATCCCCATCCTGTCTCTGTACATGGGTGCGCTTGTGCGCTGCACCACACTGTGCCTGGGC
TACTACAGGAACATCCACGACATCATCCCCGACAGGAGCGGCCCAGAGCTGGGGGGTGATGCAA
CCATAAGAAAGATGCTGAGCTTCTGGTGGCCCCTGGCTCTGATCCTGGCCACGCAGCGAATCAG
TCGGCCCATTGTCAACCTCTTCGTGTCCCGGGACCTTGGTGGCAGCTCTGCTGCTACAGAGGCA
GTGGCCATTCTGACAGCCACCTACCCCGTGGGTCATATGCCATATGGCTGGTTGACAGAAATCC
GGGCTGTCTACCCTGCTTTTGACAAGAATAACCCCAGCAATAAACTGGCGAACACAAGCAACAC
GGTCACCTCAGCCCACATCAAGAAGTTCACCTTTGTCTGCATGGCGCTGTCGCTGACGCTCTGT
TTTGTCATGTTCTGGACCCCCAACGTCTCTGAGAAGATTCTGATAGATATCATTGGAGTGGACT
TTGCCTTTGCAGAACTCTGTGTCATTCCTCTGCGTATCTTCTCCTTCTTCCCAGTGCCAGTGAC
TGTGAGAGCTCATCTCACTGGATGGCTGATGACACTGAAGAAAACCTTTGTGCTGGCGCCCAGC
TCCGTGCTGCGCATCATCGTCCTCATCACCAGCCTTGTGGTCCTGCCGTACCTGGGGGTGCACG
GAGCCACACTAGGTGTGGGCTCCCTTCTAGCAGGGTTTGTGGGAGAATCTACCATGGTTGCCCT
TGCAGCATGCTATGTCTATCGAAAACAGAAAAAGAAGATGGAGAATGAGTCAGCCACCGAGGGA
GAAGACTCGGCCATGACCGACATGCCTCCAACAGAGGAGGTCACAGACATCGTAGAGATGAGAG
AAGAAAATGAGTAAGCACAGGCTGCTGGGGGCCACCGCAGGGACAGTCAGGACAACAACTGTCG
TCTCTTTCCTCCTCCTCCTCCCATCAAGTTGTTTTCTGTTGTTTAATTTTTATTCTTGGTTATG
AAAGAGGCCTTGATTTAGAGGTTTCGTATAAATTCTCTAGCATACTGGGTATGCTCACCGATGC
AGGGACCTGAAGAAAGGTCTTTACTGTCGCTTTGTAACTCAGAATCGCTGACTTCACGCCCCTG
CTTCATAAAACCCAAAAGATAGAGCTGCCTCTTGGTCAACGTTTCTACTCCCTTGGACAATCTC
CACTTTGGAACCAAAGGACTTGGGCCAGACTTTTCCTGTTCATGTTTGCCTCCTCCTAAGAATC
AACAGGTTGAAGCTCAGCCTCTCTTGACTTGCTCCCCAACACTGTGGCTCTGGAGTCATGAACT
ATCTGCCGCACATACTGGTGGGCCCCAGGCTGCAGCCCACAGTCTCCCTGTTCCCAGAGGAAGG
GCTGGTGGCCCTGCTGGGCCAACGTAGTGGGAATTTAATCTCCTGTAGAAATTGGGTCAGTCAC
CAACTGACTTGATCGTCAGCATCCCATTGTTTTCCTGGTTTCACTGAGTTGCCGCACCCCACAG
TGTATATACATGAGCTGACTTTTCAGAGCTGTCCCGCAAGTGCAGCTCCAGTGTCAGCACCCTC
CGCATGAGTTTCCCTGAAGGCTTGCGTTTACTCGCCTTCCCTGAAGATGGCACTAGAGCGAGAA
GTGGAGCGTTCTAACTGTCCATTTCTCTAACTGTCCATTTCGTTTTCACAGTGAGCAAAGCTTT
AAGTCGTAATCTAGCATCCTAATGCCAGGGTCTTGTCTCGTAACTTCTGATGTAGATGTGCCGC
CTATTTCTGCAGGACAGGTAACCGAGTGTACTATGGTACTCCCCTCCACACCATAAAGCAAGAC
ATTTTATAAACAGTATCAAGGTCACTATGTGATACCCCGGAAATAATGCATTGGAAATCCACTT
AGTGCAGTATATTTTTCTAAGTTTTGGAAAGCGGGTTTTTTCCTTTAAAAAAAATTATGGACAC
AGTTCACTAAATTCCTGATTTAGTCAAAGTAACTAGACTGAAAGAACCTAAACAAAACAAATAT
TTTAAAGATATAAATATATGCTGTATATGTTATGTAATTTATTTTAGGCTATAATACATTTCCT
ATTTTCGCATTTTCAATAAAATGTCTCTAATACAATTCAGTGATTGCCTTCATGCTCCACATAC
CTACAGCTTACTCGGGTTGTACCAGTGACCGCTGTATGTTACAGCCTTCTACACGTCCCTTGTG
TATGAATGTAAGGGCCTACAGATCCAATTGATGGGCAACCTCGGGAGGAAATGGATCCACTACT
GTAGACAGGCAAAGGTGGGAAGGGCGGAGGGAAAAGGGCGGAAGGCGGGCCTCTTGTGCTTATT
ATTTTGGTGTTGTGTAACCTCATGTTAAGACTGTCAGGGCTACACAGGCTCGCATTTCCATTTC
TAGATACCCAGTGTCCCTCATATGTGCCCACCATGGGAACAAATCCTATGTGCTTCCGTAGCTG
CTTGTGGGTGACGTCAGGGGCAGATCTGAAAGATAACTGAAAGTCTTAATTGTATTGGCTTTTT
AAAGTACATGACTAGAAAATTAAACAGCAATATTTTTTAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_065065	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB65653	(Get FASTA)	NCBI Sequence Viewer
	AAB65654	(Get FASTA)	NCBI Sequence Viewer
	AAF88038	(Get FASTA)	NCBI Sequence Viewer
	AAH54379	(Get FASTA)	NCBI Sequence Viewer
	ABI30219	(Get FASTA)	NCBI Sequence Viewer
	BAC38778	(Get FASTA)	NCBI Sequence Viewer
	BAE28324	(Get FASTA)	NCBI Sequence Viewer
	EDL08900	(Get FASTA)	NCBI Sequence Viewer
	Q9JHZ2	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_065065 ⟸ NM_020332

- UniProtKB:

O35139 (UniProtKB/Swiss-Prot), Q9JHZ2 (UniProtKB/Swiss-Prot), Q3UG85 (UniProtKB/TrEMBL), Q8C438 (UniProtKB/TrEMBL), A0A8C6HPY9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVKFPALTHYWPLIRFLVPLGITNIAIDFGEQALNRGIAAVKEDAVEMLASYGLAYSLMKFFTG
PMSDFKNVGLVFVNSKRDRAKAVLCMVVAGAIAAVFHTLIAYSDLGYYIINKLHHVDESVGSKT
RRAFLYLAAFPFMDAMAWTHAGILLKHKYSFLVGCASISDVIAQVVFVAILLHSHLECREPLLI
PILSLYMGALVRCTTLCLGYYRNIHDIIPDRSGPELGGDATIRKMLSFWWPLALILATQRISRP
IVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWLTEIRAVYPAFDKNNPSNKLANTSNTVT
SAHIKKFTFVCMALSLTLCFVMFWTPNVSEKILIDIIGVDFAFAELCVIPLRIFSFFPVPVTVR
AHLTGWLMTLKKTFVLAPSSVLRIIVLITSLVVLPYLGVHGATLGVGSLLAGFVGESTMVALAA
CYVYRKQKKKMENESATEGEDSAMTDMPPTEEVTDIVEMREENE

hide sequence

RefSeq Acc Id:

ENSMUSP00000022875 ⟸ ENSMUST00000022875

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JHZ2-F1-model_v2	AlphaFold	Q9JHZ2	1-492	view protein structure

Promoters

RGD ID:

6825764

Promoter ID:

MM_KWN:18152

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, BoneMarrow_0Hour

Transcripts:

OTTMUST00000065059

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	15	27,395,896 - 27,396,562 (+)	MPROMDB

RGD ID:

8683498

Promoter ID:

EPDNEW_M19779

Type:

initiation region

Name:

Ank_1

Description:

Mus musculus progressive ankylosis , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M19780

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	15	27,466,686 - 27,466,746	EPDNEW

RGD ID:

8683500

Promoter ID:

EPDNEW_M19780

Type:

initiation region

Name:

Ank_2

Description:

Mus musculus progressive ankylosis , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M19779

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	15	27,466,843 - 27,466,903	EPDNEW

RGD ID:

6825771

Promoter ID:

MM_KWN:18155

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain

Transcripts:

UC007VJP.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	15	27,500,491 - 27,501,392 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:3045421	AgrOrtholog
Ensembl Genes	ENSMUSG00000022265	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000022875	ENTREZGENE
	ENSMUSP00000022875.7	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000022875	ENTREZGENE
	ENSMUST00000022875.7	UniProtKB/Swiss-Prot
InterPro	ANKH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:11732	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:3045421	ENTREZGENE
NCBI Gene	11732	ENTREZGENE
PANTHER	PROGRESSIVE ANKYLOSIS PROTEIN HOMOLOG	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR28384	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	ANKH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ank	PhenoGen
UniProt	A0A8C6HPY9	ENTREZGENE
	ANKH_MOUSE	UniProtKB/Swiss-Prot
	O35139	ENTREZGENE
	Q3UG85	ENTREZGENE, UniProtKB/TrEMBL
	Q8C438	ENTREZGENE, UniProtKB/TrEMBL
	Q9JHZ2	ENTREZGENE
UniProt Secondary	O35138	UniProtKB/Swiss-Prot
	O35139	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Mammalian Phenotype

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Mammalian Phenotype