Bmpr1a (bone morphogenetic protein receptor, type 1A) - Rat Genome Database

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Gene: Bmpr1a (bone morphogenetic protein receptor, type 1A) Mus musculus
Analyze
Symbol: Bmpr1a
Name: bone morphogenetic protein receptor, type 1A
RGD ID: 734373
MGI Page MGI
Description: Enables BMP binding activity and BMP receptor activity. Involved in several processes, including circulatory system development; fibrous ring of heart morphogenesis; and positive regulation of cell population proliferation. Acts upstream of or within several processes, including limb morphogenesis; regionalization; and regulation of gene expression. Located in cell surface. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; limb; and sensory organ. Used to study Ebstein anomaly; Wolff-Parkinson-White syndrome; and osteoarthritis. Human ortholog(s) of this gene implicated in hereditary mixed polyposis syndrome 2; intestinal disease; and juvenile polyposis syndrome. Orthologous to human BMPR1A (bone morphogenetic protein receptor type 1A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110037I22Rik; activin receptor-like kinase 3; AL; ALK-3; ALK3; AU045487; Bm; BMP; BMP type-1A receptor; BMP-2/BMP-4 receptor; Bmpr; BMPR-1A; BMPR-IA; bone morphogenetic protein receptor type-1A; serine/threonine-protein kinase receptor R5; SKR5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391434,133,018 - 34,225,335 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1434,132,691 - 34,225,298 (-)EnsemblGRCm39 Ensembl
GRCm381434,411,061 - 34,503,336 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,410,734 - 34,503,341 (-)EnsemblGRCm38mm10GRCm38
MGSCv371435,224,254 - 35,315,732 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361433,240,160 - 33,331,638 (-)NCBIMGSCv36mm8
Celera1430,676,409 - 30,725,958 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
angiogenesis  (ISO)
anterior/posterior pattern specification  (IMP)
atrioventricular node cell development  (IMP)
atrioventricular valve development  (IMP)
BMP signaling pathway  (IBA,IDA,IGI,IMP,ISO)
cardiac conduction system development  (IMP)
cardiac right ventricle morphogenesis  (IMP)
cartilage development  (IMP)
cellular response to BMP stimulus  (ISO)
cellular response to growth factor stimulus  (IBA)
central nervous system neuron differentiation  (IGI)
chondrocyte differentiation  (IDA)
developmental growth  (IMP)
dorsal aorta morphogenesis  (IMP)
dorsal/ventral axis specification  (IMP)
dorsal/ventral pattern formation  (IBA,IGI)
ectoderm development  (IMP)
embryonic digit morphogenesis  (IGI)
embryonic morphogenesis  (IMP)
embryonic organ development  (IMP)
endocardial cushion formation  (IMP)
endocardial cushion morphogenesis  (IMP)
endoderm development  (IMP)
epithelial cell proliferation  (IMP)
fibrous ring of heart morphogenesis  (IMP)
heart development  (IMP)
heart formation  (IMP)
heart morphogenesis  (IMP)
hindlimb morphogenesis  (IMP)
immune response  (ISO)
in utero embryonic development  (IMP)
lateral mesoderm development  (IMP)
lung development  (IMP)
mesendoderm development  (IMP)
mesoderm formation  (IMP)
mitral valve morphogenesis  (IMP)
Mullerian duct regression  (IMP)
negative regulation of gene expression  (IMP)
negative regulation of muscle cell differentiation  (IMP)
negative regulation of neurogenesis  (IMP)
negative regulation of smooth muscle cell migration  (ISO)
nervous system development  (IMP)
neural crest cell development  (IMP)
neural plate mediolateral regionalization  (IMP)
neural plate pattern specification  (IMP)
odontogenesis of dentin-containing tooth  (IMP)
osteoblast differentiation  (IDA)
outflow tract morphogenesis  (IMP)
outflow tract septum morphogenesis  (IMP)
paraxial mesoderm development  (IGI,IMP)
paraxial mesoderm structural organization  (IMP)
pattern specification process  (IMP)
pharyngeal arch artery morphogenesis  (IMP)
phosphorylation  (IEA)
pituitary gland development  (IMP)
positive regulation of bone mineralization  (ISO)
positive regulation of cardiac muscle cell proliferation  (IMP)
positive regulation of cardiac ventricle development  (IMP)
positive regulation of epithelial cell proliferation  (IMP)
positive regulation of gene expression  (ISO)
positive regulation of mesenchymal cell proliferation  (IMP)
positive regulation of miRNA transcription  (IDA)
positive regulation of osteoblast differentiation  (ISO)
positive regulation of SMAD protein signal transduction  (ISO)
positive regulation of transcription by RNA polymerase II  (IDA,IMP,ISO)
positive regulation of transforming growth factor beta2 production  (IMP)
positive regulation of vascular associated smooth muscle cell proliferation  (IMP,ISO)
regulation of cardiac muscle cell apoptotic process  (IMP)
regulation of cardiac muscle cell proliferation  (IMP)
regulation of cellular senescence  (IGI)
regulation of endothelial cell differentiation  (IDA)
regulation of endothelial cell proliferation  (IDA)
regulation of lateral mesodermal cell fate specification  (IGI)
regulation of neural crest cell differentiation  (IMP)
regulation of neural crest cell fate specification  (IMP)
roof of mouth development  (IMP)
somatic stem cell population maintenance  (IMP)
somitogenesis  (IMP)
transforming growth factor beta receptor signaling pathway  (ISO)
transmembrane receptor protein serine/threonine kinase signaling pathway  (IEA)
tricuspid valve morphogenesis  (IMP)
ventricular compact myocardium morphogenesis  (IMP)
ventricular septum morphogenesis  (IMP)
ventricular trabecula myocardium morphogenesis  (IMP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal articular cartilage morphology  (IAGP)
abnormal bone structure  (IAGP)
abnormal cardiomyocyte apoptosis  (IAGP)
abnormal cartilage development  (IAGP)
abnormal chondrocyte differentiation  (IAGP)
abnormal chondrocyte morphology  (IAGP)
abnormal digit development  (IAGP)
abnormal digit morphology  (IAGP)
abnormal ear shape  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal embryonic-extraembryonic boundary morphology  (IAGP)
abnormal epiphyseal plate morphology  (IAGP)
abnormal eye development  (IAGP)
abnormal fetal cardiomyocyte proliferation  (IAGP)
abnormal gastric gland morphology  (IAGP)
abnormal hair follicle dermal papilla morphology  (IAGP)
abnormal hair follicle morphology  (IAGP)
abnormal hair follicle orientation  (IAGP)
abnormal hair follicle regression  (IAGP)
abnormal hair growth  (IAGP)
abnormal hair shaft morphology  (IAGP)
abnormal heart morphology  (IAGP)
abnormal hindlimb morphology  (IAGP)
abnormal impulse conducting system conduction  (IAGP)
abnormal long bone epiphysis morphology  (IAGP)
abnormal lung development  (IAGP)
abnormal lung epithelium morphology  (IAGP)
abnormal lung morphology  (IAGP)
abnormal mitral valve cusp morphology  (IAGP)
abnormal mouth morphology  (IAGP)
abnormal nail morphology  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal notochord morphology  (IAGP)
abnormal osteoclast differentiation  (IAGP)
abnormal osteoclast physiology  (IAGP)
abnormal pituitary gland development  (IAGP)
abnormal pyloric gastric gland morphology  (IAGP)
abnormal Rathke's pouch development  (IAGP)
abnormal respiratory system physiology  (IAGP)
abnormal retina ganglion cell morphology  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retina pigment epithelium morphology  (IAGP)
abnormal skeleton development  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal skeleton physiology  (IAGP)
abnormal stomach epithelium morphology  (IAGP)
abnormal submucosal gland morphology  (IAGP)
abnormal suckling behavior  (IAGP)
abnormal synovial joint membrane morphology  (IAGP)
abnormal tail morphology  (IAGP)
abnormal thoracic cage shape  (IAGP)
abnormal tooth development  (IAGP)
abnormal tooth morphology  (IAGP)
abnormal tricuspid valve cusp morphology  (IAGP)
abnormal tricuspid valve morphology  (IAGP)
abnormal ulna morphology  (IAGP)
abnormal vascular branching morphogenesis  (IAGP)
abnormal vascular development  (IAGP)
abnormal vein morphology  (IAGP)
abnormal vertebrae development  (IAGP)
abnormal vertebral column morphology  (IAGP)
abnormal visceral endoderm morphology  (IAGP)
abnormal visceral yolk sac morphology  (IAGP)
abnormal vitelline vasculature morphology  (IAGP)
absent atrioventricular cushions  (IAGP)
absent hindlimb  (IAGP)
absent mesoderm  (IAGP)
absent PR interval  (IAGP)
absent teeth  (IAGP)
alopecia  (IAGP)
anophthalmia  (IAGP)
chondrodystrophy  (IAGP)
cyclopia  (IAGP)
decreased body size  (IAGP)
decreased bone ossification  (IAGP)
decreased cardiac muscle contractility  (IAGP)
decreased cell proliferation  (IAGP)
decreased embryo size  (IAGP)
decreased embryonic epiblast cell proliferation  (IAGP)
decreased fetal size  (IAGP)
decreased grip strength  (IAGP)
decreased joint mobility  (IAGP)
decreased length of long bones  (IAGP)
decreased osteoclast cell number  (IAGP)
decreased radius size  (IAGP)
decreased tumor-free survival time  (IAGP)
decreased type II pneumocyte number  (IAGP)
delayed bone ossification  (IAGP)
Ebstein's malformation of tricuspid valve  (IAGP)
ectopic digits  (IAGP)
embryonic growth arrest  (IAGP)
embryonic lethality between implantation and somite formation, complete penetrance  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
enlarged parietal bone  (IAGP)
enophthalmos  (IAGP)
eyelids open at birth  (IAGP)
failure of endochondral bone ossification  (IAGP)
failure of primitive streak formation  (IAGP)
fused joints  (IAGP)
gastric polyps  (IAGP)
hemorrhage  (IAGP)
increased bone mass  (IAGP)
increased bone mineralization  (IAGP)
increased embryonic epiblast cell apoptosis  (IAGP)
increased hair follicle number  (IAGP)
increased retina apoptosis  (IAGP)
increased salivary gland tumor incidence  (IAGP)
increased squamous cell carcinoma incidence  (IAGP)
internal hemorrhage  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
male pseudohermaphroditism  (IAGP)
microcephaly  (IAGP)
midface hypoplasia  (IAGP)
mitral valve regurgitation  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
osteoarthritis  (IAGP)
osteosclerosis  (IAGP)
pale yolk sac  (IAGP)
pallor  (IAGP)
pericardial effusion  (IAGP)
persistent truncus arteriosis  (IAGP)
polydactyly  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preneoplasia  (IAGP)
preweaning lethality, complete penetrance  (IAGP)
respiratory distress  (IAGP)
secondary sex reversal  (IAGP)
short ears  (IAGP)
short limbs  (IAGP)
short snout  (IAGP)
short tail  (IAGP)
small hair follicles  (IAGP)
small heart  (IAGP)
small thoracic cage  (IAGP)
sparse hair  (IAGP)
stomach inflammation  (IAGP)
syndactyly  (IAGP)
thick embryonic epiblast  (IAGP)
vascular smooth muscle hypoplasia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Mapping of hereditary mixed polyposis syndrome (HMPS) to chromosome 10q23 by genomewide high-density single nucleotide polymorphism (SNP) scan and identification of BMPR1A loss of function. Cao X, etal., J Med Genet. 2006 Mar;43(3):e13.
2. Contiguous gene deletion within chromosome arm 10q is associated with juvenile polyposis of infancy, reflecting cooperation between the BMPR1A and PTEN tumor-suppressor genes. Delnatte C, etal., Am J Hum Genet. 2006 Jun;78(6):1066-74. Epub 2006 Apr 14.
3. Bone morphogenetic protein signalling in heritable versus idiopathic pulmonary hypertension. Dewachter L, etal., Eur Respir J. 2009 Nov;34(5):1100-10. Epub 2009 Mar 26.
4. Germline mutations of the gene encoding bone morphogenetic protein receptor 1A in juvenile polyposis. Howe JR, etal., Nat Genet. 2001 Jun;28(2):184-7.
5. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
6. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
7. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
8. MGDs mouse GO annotations MGD data from the GO Consortium
9. MGD IEA MGD IEA
10. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
11. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
12. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
13. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
14. Mouse MP Annotation Import Pipeline RGD automated import pipeline
15. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Germline mutations in BMPR1A/ALK3 cause a subset of cases of juvenile polyposis syndrome and of Cowden and Bannayan-Riley-Ruvalcaba syndromes. Zhou XP, etal., Am J Hum Genet 2001 Oct;69(4):704-11. Epub 2001 Aug 30.
Additional References at PubMed
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Genomics

Comparative Map Data
Bmpr1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391434,133,018 - 34,225,335 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1434,132,691 - 34,225,298 (-)EnsemblGRCm39 Ensembl
GRCm381434,411,061 - 34,503,336 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,410,734 - 34,503,341 (-)EnsemblGRCm38mm10GRCm38
MGSCv371435,224,254 - 35,315,732 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361433,240,160 - 33,331,638 (-)NCBIMGSCv36mm8
Celera1430,676,409 - 30,725,958 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.81NCBI
BMPR1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381086,755,763 - 86,932,844 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1086,756,596 - 86,932,825 (+)EnsemblGRCh38hg38GRCh38
GRCh371088,516,376 - 88,687,726 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361088,506,376 - 88,674,925 (+)NCBINCBI36Build 36hg18NCBI36
Build 341088,506,375 - 88,674,924NCBI
Celera1082,519,484 - 82,687,979 (+)NCBICelera
Cytogenetic Map10q23.2NCBI
HuRef1082,370,811 - 82,538,774 (+)NCBIHuRef
CHM1_11088,798,078 - 88,966,382 (+)NCBICHM1_1
T2T-CHM13v2.01087,639,833 - 87,816,596 (+)NCBIT2T-CHM13v2.0
Bmpr1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2169,736,390 - 9,829,825 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,736,630 - 9,780,616 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx169,756,712 - 9,800,677 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01610,901,424 - 10,945,388 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0169,751,786 - 9,795,752 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01610,758,278 - 10,852,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1610,758,527 - 10,802,512 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0169,084,569 - 9,127,943 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41610,061,943 - 10,105,854 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11610,061,941 - 10,105,852 (-)NCBI
Celera165,436,477 - 5,480,314 (+)NCBICelera
Cytogenetic Map16p15NCBI
Bmpr1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555105,905,008 - 5,936,312 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555105,812,571 - 5,936,312 (+)NCBIChiLan1.0ChiLan1.0
BMPR1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11098,750,184 - 98,925,412 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01083,185,040 - 83,353,239 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11086,742,248 - 86,912,912 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1086,837,469 - 86,912,912 (+)Ensemblpanpan1.1panPan2
BMPR1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1434,499,898 - 34,582,481 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl434,517,492 - 34,578,923 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha434,508,865 - 34,570,053 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0434,801,402 - 34,942,941 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl434,769,955 - 34,941,813 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1434,723,326 - 34,784,614 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0434,892,537 - 34,953,583 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0435,397,828 - 35,459,419 (+)NCBIUU_Cfam_GSD_1.0
Bmpr1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721343,941,218 - 44,004,913 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493680448,947 - 115,412 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493680452,435 - 115,289 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BMPR1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1487,742,459 - 87,891,790 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11487,743,270 - 87,891,790 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21495,239,745 - 95,280,923 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BMPR1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1944,944,463 - 45,108,832 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl944,941,460 - 45,027,275 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660485,049,884 - 5,217,543 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bmpr1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624841219,133 - 265,397 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624841218,642 - 304,744 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bmpr1a
3533 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1204
Count of miRNA genes:677
Interacting mature miRNAs:807
Transcripts:ENSMUST00000049005, ENSMUST00000165280, ENSMUST00000171343, ENSMUST00000171551
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
14696688Rfq2_mrearing frequency QTL 2, males (mouse)143372195735721957Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse

Markers in Region
RH136590  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381434,413,925 - 34,414,149UniSTSGRCm38
MGSCv371435,227,111 - 35,227,335UniSTSGRCm37
Celera1430,679,266 - 30,679,490UniSTS
Cytogenetic Map14BUniSTS
cM Map1413.0UniSTS
Bmpr1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381434,411,437 - 34,412,409UniSTSGRCm38
MGSCv371435,224,623 - 35,225,595UniSTSGRCm37
Celera1430,676,778 - 30,677,750UniSTS
Cytogenetic Map14BUniSTS
cM Map1413.0UniSTS
cM Map1413.0UniSTS
U04672  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14BUniSTS
cM Map1413.0UniSTS
Whitehead_YAC14 UniSTS
D14Mit189  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381434,418,566 - 34,418,667UniSTSGRCm38
MGSCv371435,231,752 - 35,231,853UniSTSGRCm37
Celera1430,683,978 - 30,684,077UniSTS
Cytogenetic Map14BUniSTS
cM Map1412.5UniSTS
Whitehead Genetic1419.7UniSTS
Whitehead/MRC_RH14301.79UniSTS
Whitehead_YAC14 UniSTS
AU045487  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381434,413,445 - 34,413,550UniSTSGRCm38
MGSCv371435,226,631 - 35,226,736UniSTSGRCm37
Celera1430,678,786 - 30,678,891UniSTS
Cytogenetic Map14BUniSTS
cM Map1413.0UniSTS
Whitehead/MRC_RH14301.79UniSTS
UniSTS:237164  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381434,412,037 - 34,412,146UniSTSGRCm38
MGSCv371435,225,223 - 35,225,332UniSTSGRCm37
Celera1430,677,378 - 30,677,487UniSTS
Cytogenetic Map14BUniSTS
cM Map1413.0UniSTS
Bmpr1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14BUniSTS
Bmpr1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14BUniSTS
cM Map1413.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide A38817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY365062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU511310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU840836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D16250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D45002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D45007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D45008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D45012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D45017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D45019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB448233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U04672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000049005   ⟹   ENSMUSP00000035900
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1434,132,691 - 34,224,644 (-)Ensembl
GRCm38.p6 Ensembl1434,410,734 - 34,502,687 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165280   ⟹   ENSMUSP00000131984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1434,136,443 - 34,182,513 (-)Ensembl
GRCm38.p6 Ensembl1434,414,486 - 34,460,556 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171343   ⟹   ENSMUSP00000126852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1434,163,063 - 34,225,298 (-)Ensembl
GRCm38.p6 Ensembl1434,441,106 - 34,503,341 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171551   ⟹   ENSMUSP00000129927
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1434,165,890 - 34,224,485 (-)Ensembl
GRCm38.p6 Ensembl1434,443,933 - 34,502,528 (-)Ensembl
RefSeq Acc Id: NM_009758   ⟹   NP_033888
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391434,133,025 - 34,224,503 (-)NCBI
GRCm381434,411,068 - 34,502,546 (-)NCBI
MGSCv371435,224,254 - 35,315,732 (-)RGD
Celera1430,676,409 - 30,725,958 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006518469   ⟹   XP_006518532
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391434,133,018 - 34,224,667 (-)NCBI
GRCm381434,411,061 - 34,502,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006518470   ⟹   XP_006518533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391434,133,018 - 34,225,335 (-)NCBI
GRCm381434,411,061 - 34,503,336 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158412   ⟹   XP_036014305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391434,133,018 - 34,224,436 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158413   ⟹   XP_036014306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391434,133,018 - 34,224,436 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033888   ⟸   NM_009758
- Peptide Label: precursor
- UniProtKB: P36895 (UniProtKB/Swiss-Prot),   Q53Z43 (UniProtKB/TrEMBL),   Q60607 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006518533   ⟸   XM_006518470
- Peptide Label: isoform X1
- UniProtKB: P36895 (UniProtKB/Swiss-Prot),   Q53Z43 (UniProtKB/TrEMBL),   Q60607 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006518532   ⟸   XM_006518469
- Peptide Label: isoform X1
- UniProtKB: P36895 (UniProtKB/Swiss-Prot),   Q53Z43 (UniProtKB/TrEMBL),   Q60607 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000035900   ⟸   ENSMUST00000049005
RefSeq Acc Id: ENSMUSP00000129927   ⟸   ENSMUST00000171551
RefSeq Acc Id: ENSMUSP00000126852   ⟸   ENSMUST00000171343
RefSeq Acc Id: ENSMUSP00000131984   ⟸   ENSMUST00000165280
RefSeq Acc Id: XP_036014306   ⟸   XM_036158413
- Peptide Label: isoform X1
- UniProtKB: P36895 (UniProtKB/Swiss-Prot),   Q53Z43 (UniProtKB/TrEMBL),   Q60607 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036014305   ⟸   XM_036158412
- Peptide Label: isoform X1
- UniProtKB: P36895 (UniProtKB/Swiss-Prot),   Q53Z43 (UniProtKB/TrEMBL),   Q60607 (UniProtKB/TrEMBL)
Protein Domains
GS   Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P36895-F1-model_v2 AlphaFold P36895 1-532 view protein structure

Promoters
RGD ID:8681936
Promoter ID:EPDNEW_M18999
Type:initiation region
Name:Bmpr1a_1
Description:Mus musculus bone morphogenetic protein receptor, type 1A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381434,502,540 - 34,502,600EPDNEW
RGD ID:6824734
Promoter ID:MM_KWN:16213
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:UC007TAX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361435,273,536 - 35,274,327 (-)MPROMDB
RGD ID:6824733
Promoter ID:MM_KWN:16214
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:NM_009758
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361435,315,271 - 35,316,602 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1338938 AgrOrtholog
Ensembl Genes ENSMUSG00000021796 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049005 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000165280.8 UniProtKB/TrEMBL
  ENSMUST00000171343.9 UniProtKB/TrEMBL
  ENSMUST00000171551.2 UniProtKB/TrEMBL
Gene3D-CATH 2.10.60.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Activin_recp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Snake_toxin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGFB_receptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12166 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1338938 ENTREZGENE
NCBI Gene 12166 ENTREZGENE
PANTHER BONE MORPHOGENETIC PROTEIN RECEPTOR TYPE-1A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23255 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Activin_recp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PK_Tyr_Ser-Thr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
  TGF_beta_GS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bmpr1a PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS51256 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00467 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57302 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt BMR1A_MOUSE UniProtKB/Swiss-Prot
  E9PW65_MOUSE UniProtKB/TrEMBL
  E9Q2G5_MOUSE UniProtKB/TrEMBL
  P36895 ENTREZGENE
  Q3UP52_MOUSE UniProtKB/TrEMBL
  Q53Z43 ENTREZGENE, UniProtKB/TrEMBL
  Q60607 ENTREZGENE, UniProtKB/TrEMBL