Rab38 (RAB38, member RAS oncogene family) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rab38 (RAB38, member RAS oncogene family) Mus musculus
Analyze
Symbol: Rab38
Name: RAB38, member RAS oncogene family
RGD ID: 734296
MGI Page MGI
Description: Predicted to enable several functions, including AP-1 adaptor complex binding activity; AP-3 adaptor complex binding activity; and BLOC-2 complex binding activity. Predicted to be involved in several processes, including endosome to melanosome transport; positive regulation of biosynthetic process; and vesicle organization. Located in melanosome. Is expressed in several structures, including foregut; lung; sensory organ; skin; and submandibular gland primordium. Orthologous to human RAB38 (RAB38, member RAS oncogene family).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310011F14Rik; AU043391; chocolate; cht; MGC107581; RAB38, member of RAS oncogene family; ras-related protein Rab-38
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39788,079,481 - 88,140,780 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl788,079,481 - 88,140,780 (+)EnsemblGRCm39 Ensembl
GRCm38788,430,273 - 88,491,572 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl788,430,273 - 88,491,572 (+)EnsemblGRCm38mm10GRCm38
MGSCv37795,578,783 - 95,640,082 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36788,305,465 - 88,366,764 (+)NCBIMGSCv36mm8
Celera785,784,928 - 85,846,216 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map749.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. TM rats: a model for platelet storage pool deficiency. Hamada S, etal., Exp Anim 1997 Jul;46(3):235-9.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. Mutation of melanosome protein RAB38 in chocolate mice. Loftus SK, etal., Proc Natl Acad Sci U S A 2002 Apr 2;99(7):4471-6. Epub 2002 Mar 26.
5. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. Altered lung surfactant system in a Rab38-deficient rat model of Hermansky-Pudlak syndrome. Osanai K, etal., Am J Physiol Lung Cell Mol Physiol. 2010 Feb;298(2):L243-51. Epub 2009 Nov 6.
10. RF-2 gene modulates proteinuria and albuminuria independently of changes in glomerular permeability in the fawn-hooded hypertensive rat. Rangel-Filho A, etal., J Am Soc Nephrol 2005 Apr;16(4):852-6. Epub 2005 Mar 9.
11. Rab38 modulates proteinuria in model of hypertension-associated renal disease. Rangel-Filho A, etal., J Am Soc Nephrol. 2013 Feb;24(2):283-92. doi: 10.1681/ASN.2012090927. Epub 2013 Jan 4.
12. Mouse MP Annotation Import Pipeline RGD automated import pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1835927   PMID:8422502   PMID:9585243   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11773082   PMID:11856727   PMID:12477932   PMID:12578829   PMID:15761153   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16923123   PMID:17043139   PMID:17671165   PMID:17724166   PMID:18477474   PMID:18715234   PMID:18832574   PMID:19403694   PMID:19493314   PMID:21267068  
PMID:21873635   PMID:22660928   PMID:22985540   PMID:23426636   PMID:24127780   PMID:24319055   PMID:25685662   PMID:26620560   PMID:26876013   PMID:28378742   PMID:28438206   PMID:31399401  
PMID:36430618   PMID:37625588   PMID:37625589   PMID:37793839  


Genomics

Comparative Map Data
Rab38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39788,079,481 - 88,140,780 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl788,079,481 - 88,140,780 (+)EnsemblGRCm39 Ensembl
GRCm38788,430,273 - 88,491,572 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl788,430,273 - 88,491,572 (+)EnsemblGRCm38mm10GRCm38
MGSCv37795,578,783 - 95,640,082 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36788,305,465 - 88,366,764 (+)NCBIMGSCv36mm8
Celera785,784,928 - 85,846,216 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map749.19NCBI
RAB38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381187,803,715 - 88,175,443 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1188,113,251 - 88,175,443 (-)EnsemblGRCh38hg38GRCh38
GRCh371187,846,419 - 87,908,611 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361187,486,079 - 87,548,247 (-)NCBINCBI36Build 36hg18NCBI36
Build 341187,486,078 - 87,548,247NCBI
Celera1186,723,503 - 86,785,679 (+)NCBICelera
Cytogenetic Map11q14.2NCBI
HuRef1184,086,688 - 84,148,798 (-)NCBIHuRef
CHM1_11187,729,200 - 87,791,404 (-)NCBICHM1_1
T2T-CHM13v2.01187,746,041 - 88,094,423 (-)NCBIT2T-CHM13v2.0
Rab38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81151,595,153 - 151,675,492 (+)NCBIGRCr8
mRatBN7.21142,182,566 - 142,262,923 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,182,556 - 142,262,924 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1150,149,817 - 150,230,171 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01157,326,253 - 157,406,599 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01150,200,179 - 150,280,523 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01152,072,716 - 152,153,449 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1152,072,665 - 152,153,449 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01158,385,888 - 158,466,621 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41144,783,919 - 144,864,573 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11144,862,324 - 144,942,979 (+)NCBI
Celera1140,481,941 - 140,561,948 (+)NCBICelera
Cytogenetic Map1q32NCBI
Rab38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554145,158,261 - 5,215,698 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554145,158,860 - 5,214,108 (+)NCBIChiLan1.0ChiLan1.0
RAB38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2988,982,414 - 89,051,335 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11190,026,601 - 90,092,945 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01183,121,858 - 83,183,698 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11186,710,358 - 86,772,796 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,710,358 - 86,773,142 (-)Ensemblpanpan1.1panPan2
RAB38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12111,769,924 - 11,823,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2111,769,351 - 11,822,815 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2111,629,645 - 11,685,137 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02111,951,012 - 12,006,559 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2111,950,427 - 12,014,114 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12111,739,658 - 11,795,116 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02111,810,618 - 11,866,135 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02111,864,785 - 11,920,329 (+)NCBIUU_Cfam_GSD_1.0
Rab38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494773,981,078 - 74,037,967 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367361,304,185 - 1,361,221 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367361,304,290 - 1,360,412 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl921,577,033 - 21,640,115 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1921,577,083 - 21,640,637 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2923,798,471 - 23,863,103 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1179,256,996 - 79,316,967 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl179,256,835 - 79,316,789 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604346,404,298 - 46,464,013 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248451,906,671 - 1,984,029 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248451,908,410 - 1,983,897 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab38
1721 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:284
Count of miRNA genes:213
Interacting mature miRNAs:251
Transcripts:ENSMUST00000107256
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
13825246Albc2_malbino coat color QTL 2 (mouse)78764920895649207Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
27226792Feml7_mfemur length 7, 5 week (mouse)78614920898949207Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
4142212Png1_mPostnatal growth 1 (mouse)Not determined7432612192394346Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
4142319Powg_mpost-ovarectomy weight gain (mouse)Not determined7285710592582163Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
12801463Rta1_mretinal aging 1 (mouse)76716802789089989Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse

Markers in Region
AU043391  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38788,491,111 - 88,491,369UniSTSGRCm38
MGSCv37795,639,621 - 95,639,879UniSTSGRCm37
Celera785,845,755 - 85,846,013UniSTS
Cytogenetic Map7E1UniSTS
cM Map746.0UniSTS
Whitehead/MRC_RH7932.1UniSTS
PMC123672P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38788,450,401 - 88,450,864UniSTSGRCm38
MGSCv37795,598,911 - 95,599,374UniSTSGRCm37
Celera785,805,055 - 85,805,518UniSTS
Cytogenetic Map7E1UniSTS
cM Map746.0UniSTS
PMC123672P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38788,430,392 - 88,430,604UniSTSGRCm38
MGSCv37795,578,902 - 95,579,114UniSTSGRCm37
Celera785,785,047 - 85,785,259UniSTS
Cytogenetic Map7E1UniSTS
cM Map746.0UniSTS
RH135407  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38788,491,168 - 88,491,360UniSTSGRCm38
MGSCv37795,639,678 - 95,639,870UniSTSGRCm37
Celera785,845,812 - 85,846,004UniSTS
Cytogenetic Map7E1UniSTS
cM Map746.0UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_028238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB232634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH011577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY062237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000107256   ⟹   ENSMUSP00000102877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl788,079,481 - 88,140,780 (+)Ensembl
GRCm38.p6 Ensembl788,430,273 - 88,491,572 (+)Ensembl
Ensembl Acc Id: ENSMUST00000208478   ⟹   ENSMUSP00000146448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl788,079,602 - 88,140,037 (+)Ensembl
GRCm38.p6 Ensembl788,430,394 - 88,490,829 (+)Ensembl
RefSeq Acc Id: NM_028238   ⟹   NP_082514
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39788,079,481 - 88,140,780 (+)NCBI
GRCm38788,430,273 - 88,491,572 (+)ENTREZGENE
MGSCv37795,578,783 - 95,640,082 (+)RGD
Celera785,784,928 - 85,846,216 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_082514   ⟸   NM_028238
- UniProtKB: Q9D7E8 (UniProtKB/Swiss-Prot),   Q8QZZ8 (UniProtKB/Swiss-Prot),   Q5FW76 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000102877   ⟸   ENSMUST00000107256
Ensembl Acc Id: ENSMUSP00000146448   ⟸   ENSMUST00000208478

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8QZZ8-F1-model_v2 AlphaFold Q8QZZ8 1-211 view protein structure

Promoters
RGD ID:8664715
Promoter ID:EPDNEW_M10388
Type:initiation region
Name:Rab38_1
Description:Mus musculus RAB38, member RAS oncogene family , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38788,430,313 - 88,430,373EPDNEW
RGD ID:6841894
Promoter ID:MM_KWN:51474
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Kidney
Transcripts:ENSMUST00000032778,   NM_028238
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36795,578,616 - 95,579,116 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919683 AgrOrtholog
Ensembl Genes ENSMUSG00000030559 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000107256 ENTREZGENE
  ENSMUST00000107256.4 UniProtKB/Swiss-Prot
  ENSMUST00000208478.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab29/Rab38/Rab32 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72433 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1919683 ENTREZGENE
NCBI Gene 72433 ENTREZGENE
PANTHER DRAB5-RELATED UniProtKB/TrEMBL
  RAB FAMILY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-38 UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rab38 PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140LHK2_MOUSE UniProtKB/TrEMBL
  Q5FW76 ENTREZGENE, UniProtKB/TrEMBL
  Q8QZZ8 ENTREZGENE
  Q9D7E8 ENTREZGENE
  RAB38_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9D7E8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-04-22 Rab38  RAB38, member RAS oncogene family    RAB38, member of RAS oncogene family  Symbol and/or name change 5135510 APPROVED