Slc23a2 (solute carrier family 23 (nucleobase transporters), member 2) - Rat Genome Database

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Gene: Slc23a2 (solute carrier family 23 (nucleobase transporters), member 2) Mus musculus
Analyze
Symbol: Slc23a2
Name: solute carrier family 23 (nucleobase transporters), member 2
RGD ID: 733830
MGI Page MGI
Description: Enables L-ascorbate:sodium symporter activity and L-ascorbic acid transmembrane transporter activity. Involved in L-ascorbic acid transmembrane transport. Acts upstream of or within blood circulation. Located in basal plasma membrane and cytoplasm. Is expressed in adrenal gland; central nervous system; liver; metanephros; and retina. Orthologous to human SLC23A2 (solute carrier family 23 member 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI844736; mKIAA0238; mSVCT2; Na(+)/L-ascorbic acid transporter 2; NBTL1; Slc2; Slc23a1; sodium-dependent vitamin C transporter 2; solute carrier family 23 (nucleobase transporters), member 1; solute carrier family 23 member 2; SVC; SVCT-2; SVCT2; yolk sac permease-like molecule 2; YS; YSPL2; YSPL3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm2123  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392131,894,416 - 131,987,287 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2131,894,416 - 131,987,028 (-)EnsemblGRCm39 Ensembl
GRCm382132,052,496 - 132,145,320 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,052,496 - 132,145,108 (-)EnsemblGRCm38mm10GRCm38
MGSCv372131,878,232 - 131,970,844 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362131,743,937 - 131,836,549 (-)NCBIMGSCv36mm8
Celera2133,279,011 - 133,328,217 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucosamine  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-D-glucosamine  (ISO)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroprene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cortisol  (ISO)
cyclosporin A  (ISO)
cyproconazole  (EXP)
dexamethasone  (ISO)
dichloroacetic acid  (EXP)
diclofenac  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (ISO)
graphite  (ISO)
hexadecanoic acid  (ISO)
hypochlorous acid  (EXP)
indometacin  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
L-ascorbic acid  (EXP,ISO)
lead(0)  (ISO)
leflunomide  (ISO)
levetiracetam  (ISO)
morphine  (ISO)
nickel sulfate  (ISO)
nifedipine  (EXP)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
phenobarbital  (EXP)
phosphonoformic acid  (EXP)
pirinixic acid  (EXP)
progesterone  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
rifampicin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sunitinib  (ISO)
taurocholic acid  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
troglitazone  (EXP)
tunicamycin  (EXP)
ursodeoxycholic acid  (ISO)
valproic acid  (ISO)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic variation in the sodium-dependent vitamin C transporters, SLC23A1, and SLC23A2 and risk for preterm delivery. Erichsen HC, etal., Am J Epidemiol. 2006 Feb 1;163(3):245-54. Epub 2005 Dec 15.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. SVCT2, a potential therapeutic target, protects against oxidative stress during ethanol-induced neurotoxicity via JNK/p38 MAPKs, NF-κB and miRNA125a-5p. Tian H, etal., Free Radic Biol Med. 2016 Jul;96:362-73. doi: 10.1016/j.freeradbiomed.2016.03.039. Epub 2016 Apr 13.
Additional References at PubMed
PMID:8889548   PMID:9804989   PMID:10349636   PMID:10471399   PMID:10512203   PMID:10556521   PMID:11004510   PMID:11042159   PMID:11076861   PMID:11214969   PMID:11217851   PMID:11502226  
PMID:11984597   PMID:12477932   PMID:12788230   PMID:12897061   PMID:12904583   PMID:14610273   PMID:14622981   PMID:14681479   PMID:15333707   PMID:15572359   PMID:15625716   PMID:15840001  
PMID:15993839   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17075057   PMID:17304569   PMID:17585336   PMID:17586466   PMID:17643393   PMID:17664139   PMID:17689499   PMID:17967808  
PMID:18394593   PMID:18614995   PMID:18668520   PMID:18799693   PMID:19254685   PMID:19361554   PMID:19672970   PMID:20122894   PMID:20541602   PMID:20558818   PMID:20974251   PMID:21267068  
PMID:21347255   PMID:21677750   PMID:21873635   PMID:22001929   PMID:22114285   PMID:22558179   PMID:22990596   PMID:23321552   PMID:24365600   PMID:24947427   PMID:25535150   PMID:25617715  
PMID:26366722   PMID:27596508   PMID:28177761   PMID:28351945   PMID:28456003   PMID:28825709   PMID:29315537   PMID:30172223   PMID:31467227   PMID:31594969   PMID:32554809   PMID:32567221  
PMID:32580031   PMID:32754987   PMID:33350980   PMID:33544780   PMID:33549889   PMID:34673103   PMID:37330196   PMID:37390985   PMID:38180226   PMID:38187761   PMID:38972487  


Genomics

Comparative Map Data
Slc23a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392131,894,416 - 131,987,287 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2131,894,416 - 131,987,028 (-)EnsemblGRCm39 Ensembl
GRCm382132,052,496 - 132,145,320 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,052,496 - 132,145,108 (-)EnsemblGRCm38mm10GRCm38
MGSCv372131,878,232 - 131,970,844 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362131,743,937 - 131,836,549 (-)NCBIMGSCv36mm8
Celera2133,279,011 - 133,328,217 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.15NCBI
SLC23A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38204,852,358 - 5,010,313 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl204,852,356 - 5,010,293 (-)EnsemblGRCh38hg38GRCh38
GRCh37204,833,004 - 4,990,959 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36204,781,002 - 4,938,939 (-)NCBINCBI36Build 36hg18NCBI36
Build 34204,781,001 - 4,938,939NCBI
Celera204,902,706 - 5,051,861 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef204,787,194 - 4,944,817 (-)NCBIHuRef
CHM1_1204,834,496 - 4,992,439 (-)NCBICHM1_1
T2T-CHM13v2.0204,891,820 - 5,049,741 (-)NCBIT2T-CHM13v2.0
Slc23a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83139,755,583 - 139,913,304 (-)NCBIGRCr8
mRatBN7.23119,302,651 - 119,395,289 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3119,302,666 - 119,460,343 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3123,206,656 - 123,298,423 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03131,793,663 - 131,885,649 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03129,462,752 - 129,554,530 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03124,632,491 - 124,842,225 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3124,632,492 - 124,724,252 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03131,132,124 - 131,266,028 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43119,796,376 - 119,886,011 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13119,701,948 - 119,791,584 (-)NCBI
Celera3118,102,047 - 118,150,099 (-)NCBICelera
Cytogenetic Map3q36NCBI
Slc23a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541515,565,249 - 15,642,153 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541515,565,344 - 15,677,935 (-)NCBIChiLan1.0ChiLan1.0
SLC23A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,801,682 - 6,017,566 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1205,798,507 - 6,014,383 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0204,874,185 - 5,024,750 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1204,670,294 - 4,790,800 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl204,670,294 - 4,790,800 (-)Ensemblpanpan1.1panPan2
SLC23A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12416,573,616 - 16,709,296 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2416,574,168 - 16,709,296 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2416,425,818 - 16,531,856 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02416,981,643 - 17,127,359 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2416,990,701 - 17,127,359 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12416,613,514 - 16,719,979 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02416,720,357 - 16,826,526 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02417,054,182 - 17,160,266 (+)NCBIUU_Cfam_GSD_1.0
Slc23a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640165,431,608 - 165,545,259 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648513,885,091 - 13,976,550 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648513,885,067 - 13,976,623 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC23A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1713,848,728 - 14,011,700 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11713,848,726 - 14,012,054 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21714,819,223 - 14,825,302 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC23A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1233,092,619 - 33,209,258 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl233,128,061 - 33,212,255 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607111,323,229 - 11,470,263 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc23a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247415,917,019 - 6,000,720 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247415,917,620 - 6,050,922 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc23a2
2893 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2010
Count of miRNA genes:835
Interacting mature miRNAs:1108
Transcripts:ENSMUST00000028815, ENSMUST00000127724, ENSMUST00000128899, ENSMUST00000133407, ENSMUST00000137910, ENSMUST00000148749, ENSMUST00000154009
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
13506763Tbvq1_mtrabecular bone volume QTL 1 (mouse)2126041920135441920Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1558989Gnf4_mgrowth and fatness 4 (mouse)Not determined2128173704132714157Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
13207586Mwmlpt2_mMorris water maze latency to platform, training, 2 (mouse)2131616184139216184Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
13207590Mwmlpa2_mMorris water maze latency to platform, all, 2 (mouse)2131616184139616184Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse

Markers in Region
AI844736  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382132,052,741 - 132,052,883UniSTSGRCm38
MGSCv372131,878,477 - 131,878,619UniSTSGRCm37
Celera2133,279,256 - 133,279,398UniSTS
Cytogenetic Map2G2UniSTS
Whitehead/MRC_RH21636.69UniSTS
Slc23a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2G2UniSTS
cM Map264.15UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001355430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB038145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL831706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY004874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000028815   ⟹   ENSMUSP00000028815
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2131,894,416 - 131,987,028 (-)Ensembl
GRCm38.p6 Ensembl2132,052,496 - 132,145,108 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2131,916,754 - 131,987,028 (-)Ensembl
GRCm38.p6 Ensembl2132,074,834 - 132,145,108 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128899   ⟹   ENSMUSP00000116640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2131,936,144 - 131,953,368 (-)Ensembl
GRCm38.p6 Ensembl2132,094,224 - 132,111,448 (-)Ensembl
Ensembl Acc Id: ENSMUST00000133407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2131,931,029 - 131,936,549 (-)Ensembl
GRCm38.p6 Ensembl2132,089,109 - 132,094,629 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2131,902,628 - 131,908,960 (-)Ensembl
GRCm38.p6 Ensembl2132,060,708 - 132,067,040 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2131,897,334 - 131,898,605 (-)Ensembl
GRCm38.p6 Ensembl2132,055,414 - 132,056,685 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154009
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2131,917,526 - 131,919,928 (-)Ensembl
GRCm38.p6 Ensembl2132,075,606 - 132,078,008 (-)Ensembl
RefSeq Acc Id: NM_001355430   ⟹   NP_001342359
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,894,416 - 131,987,287 (-)NCBI
GRCm382132,052,496 - 132,145,320 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355431   ⟹   NP_001342360
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,916,751 - 131,987,032 (-)NCBI
GRCm382132,074,834 - 132,145,108 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001421503   ⟹   NP_001408432
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,894,416 - 131,953,368 (-)NCBI
RefSeq Acc Id: NM_001421504   ⟹   NP_001408433
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,894,416 - 131,936,517 (-)NCBI
RefSeq Acc Id: NM_001421505   ⟹   NP_001408434
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,916,751 - 131,987,032 (-)NCBI
RefSeq Acc Id: NM_001421507   ⟹   NP_001408436
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,932,881 - 131,987,032 (-)NCBI
RefSeq Acc Id: NM_001421508   ⟹   NP_001408437
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,935,551 - 131,987,032 (-)NCBI
RefSeq Acc Id: NM_018824   ⟹   NP_061294
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,894,416 - 131,987,032 (-)NCBI
GRCm382132,052,496 - 132,145,108 (-)NCBI
MGSCv372131,878,232 - 131,970,844 (-)RGD
Celera2133,279,011 - 133,328,217 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_185307
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,894,416 - 131,987,032 (-)NCBI
RefSeq Acc Id: XM_006499907   ⟹   XP_006499970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,894,416 - 131,945,805 (-)NCBI
GRCm382132,052,496 - 132,103,564 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239698   ⟹   XP_011238000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,894,416 - 131,960,436 (-)NCBI
GRCm382132,052,496 - 132,118,528 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251882   ⟹   XP_030107742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,894,416 - 131,944,600 (-)NCBI
GRCm382132,052,496 - 132,102,681 (-)NCBI
Sequence:
RefSeq Acc Id: NP_061294   ⟸   NM_018824
- Peptide Label: isoform a
- UniProtKB: Q8C327 (UniProtKB/Swiss-Prot),   Q80Y23 (UniProtKB/Swiss-Prot),   Q9JM78 (UniProtKB/Swiss-Prot),   Q9EPR4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006499970   ⟸   XM_006499907
- Peptide Label: isoform X1
- UniProtKB: Q8C327 (UniProtKB/Swiss-Prot),   Q80Y23 (UniProtKB/Swiss-Prot),   Q9JM78 (UniProtKB/Swiss-Prot),   Q9EPR4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011238000   ⟸   XM_011239698
- Peptide Label: isoform X1
- UniProtKB: Q8C327 (UniProtKB/Swiss-Prot),   Q80Y23 (UniProtKB/Swiss-Prot),   Q9JM78 (UniProtKB/Swiss-Prot),   Q9EPR4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001342359   ⟸   NM_001355430
- Peptide Label: isoform a
- UniProtKB: Q9EPR4 (UniProtKB/Swiss-Prot),   Q8C327 (UniProtKB/Swiss-Prot),   Q80Y23 (UniProtKB/Swiss-Prot),   Q9JM78 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030107742   ⟸   XM_030251882
- Peptide Label: isoform X1
- UniProtKB: Q9EPR4 (UniProtKB/Swiss-Prot),   Q8C327 (UniProtKB/Swiss-Prot),   Q80Y23 (UniProtKB/Swiss-Prot),   Q9JM78 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001342360   ⟸   NM_001355431
- Peptide Label: isoform b
Ensembl Acc Id: ENSMUSP00000028815   ⟸   ENSMUST00000028815
Ensembl Acc Id: ENSMUSP00000116640   ⟸   ENSMUST00000128899
RefSeq Acc Id: NP_001408432   ⟸   NM_001421503
- Peptide Label: isoform a
- UniProtKB: Q9JM78 (UniProtKB/Swiss-Prot),   Q9EPR4 (UniProtKB/Swiss-Prot),   Q8C327 (UniProtKB/Swiss-Prot),   Q80Y23 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001408433   ⟸   NM_001421504
- Peptide Label: isoform c
RefSeq Acc Id: NP_001408434   ⟸   NM_001421505
- Peptide Label: isoform d
RefSeq Acc Id: NP_001408436   ⟸   NM_001421507
- Peptide Label: isoform e
RefSeq Acc Id: NP_001408437   ⟸   NM_001421508
- Peptide Label: isoform f

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EPR4-F1-model_v2 AlphaFold Q9EPR4 1-648 view protein structure

Promoters
RGD ID:6832728
Promoter ID:MM_KWN:31830
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:OTTMUST00000037504
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362131,881,866 - 131,882,366 (-)MPROMDB
RGD ID:6832729
Promoter ID:MM_KWN:31831
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:OTTMUST00000037510
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362131,892,356 - 131,893,522 (-)MPROMDB
RGD ID:6832730
Promoter ID:MM_KWN:31832
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000037509
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362131,903,576 - 131,904,377 (-)MPROMDB
RGD ID:6832911
Promoter ID:MM_KWN:31833
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Liver
Transcripts:UC008MMH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362131,914,876 - 131,916,127 (-)MPROMDB
RGD ID:6832731
Promoter ID:MM_KWN:31834
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000037508
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362131,920,176 - 131,920,727 (-)MPROMDB
RGD ID:6832732
Promoter ID:MM_KWN:31836
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Lung
Transcripts:OTTMUST00000037507
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362131,936,731 - 131,937,682 (-)MPROMDB
RGD ID:6847700
Promoter ID:MM_ACW:29822
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:SLC23A2.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362131,943,776 - 131,944,276 (-)MPROMDB
RGD ID:6832724
Promoter ID:MM_KWN:31838
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:NM_018824,   OTTMUST00000037506
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362131,970,676 - 131,971,177 (-)MPROMDB
RGD ID:6878834
Promoter ID:EPDNEW_M2868
Type:multiple initiation site
Name:Slc23a2_2
Description:Mus musculus solute carrier family 23 , member 2 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2869  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382132,111,448 - 132,111,508EPDNEW
RGD ID:6878836
Promoter ID:EPDNEW_M2869
Type:initiation region
Name:Slc23a2_1
Description:Mus musculus solute carrier family 23 , member 2 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2868  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382132,145,081 - 132,145,141EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859682 AgrOrtholog
Ensembl Genes ENSMUSG00000027340 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028815 ENTREZGENE
  ENSMUST00000028815.15 UniProtKB/Swiss-Prot
  ENSMUST00000127724 ENTREZGENE
  ENSMUST00000128899.2 UniProtKB/TrEMBL
InterPro Xan_ur_permease UniProtKB/Swiss-Prot
  Xant/urac/vitC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54338 UniProtKB/Swiss-Prot
MGD MGI:1859682 ENTREZGENE
NCBI Gene 54338 ENTREZGENE
PANTHER PTHR11119:SF33 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Xan_ur_permease UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc23a2 PhenoGen
PROSITE XANTH_URACIL_PERMASE UniProtKB/Swiss-Prot
UniProt A2ANL1_MOUSE UniProtKB/TrEMBL
  Q3TDU7_MOUSE UniProtKB/TrEMBL
  Q80Y23 ENTREZGENE
  Q8C327 ENTREZGENE
  Q9EPR4 ENTREZGENE
  Q9JM78 ENTREZGENE
  S23A2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q80Y23 UniProtKB/Swiss-Prot
  Q8C327 UniProtKB/Swiss-Prot
  Q9JM78 UniProtKB/Swiss-Prot