Pafah1b2 (platelet-activating factor acetylhydrolase, isoform 1b, subunit 2) - Rat Genome Database

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Gene: Pafah1b2 (platelet-activating factor acetylhydrolase, isoform 1b, subunit 2) Mus musculus
Analyze
Symbol: Pafah1b2
Name: platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
RGD ID: 733677
MGI Page MGI
Description: Predicted to enable 1-alkyl-2-acetylglycerophosphocholine esterase activity; identical protein binding activity; and platelet-activating factor acetyltransferase activity. Involved in spermatogenesis. Located in cytoplasm. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in lymphoma. Orthologous to human PAFAH1B2 (platelet activating factor acetylhydrolase 1b catalytic subunit 2); PARTICIPATES IN altered Reelin signaling pathway; Reelin signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2610005M20R; 2610005M20Rik; AI747451; AU021353; hypothetical protein LOC70308; mus[b; mus[b]; Paf; PAF acetylhydrolase 30 kDa subunit; PAF-AH 30 kDa subunit; PAF-AH subunit beta; PAFAH subunit beta; Pafahb; platelet-activating factor acetylhydrolase IB subunit alpha2; platelet-activating factor acetylhydrolase IB subunit beta; platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit; RIKEN cDNA 2610005M20 gene; uncharacterized protein LOC70308
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39945,876,609 - 45,923,988 (-)NCBIGRCm39mm39
GRCm39 Ensembl945,874,157 - 45,923,988 (-)Ensembl
GRCm38945,965,311 - 46,012,690 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl945,962,859 - 46,012,690 (-)EnsemblGRCm38mm10GRCm38
MGSCv37945,773,394 - 45,792,954 (-)NCBIGRCm37mm9NCBIm37
MGSCv36945,716,306 - 45,735,866 (-)NCBImm8
Celera943,249,530 - 43,269,004 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:8954729   PMID:10026115   PMID:10349636   PMID:10393212   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11159375   PMID:12477932   PMID:12520002  
PMID:12551946   PMID:12775763   PMID:14610273   PMID:14681479   PMID:15147871   PMID:15840001   PMID:16141072   PMID:16141073   PMID:16778019   PMID:17555748   PMID:17916774   PMID:17967808  
PMID:18434304   PMID:18799693   PMID:19272360   PMID:21183738   PMID:21677750   PMID:21873635   PMID:22522921   PMID:23238734   PMID:26496610   PMID:30333137  


Genomics

Comparative Map Data
Pafah1b2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39945,876,609 - 45,923,988 (-)NCBIGRCm39mm39
GRCm39 Ensembl945,874,157 - 45,923,988 (-)Ensembl
GRCm38945,965,311 - 46,012,690 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl945,962,859 - 46,012,690 (-)EnsemblGRCm38mm10GRCm38
MGSCv37945,773,394 - 45,792,954 (-)NCBIGRCm37mm9NCBIm37
MGSCv36945,716,306 - 45,735,866 (-)NCBImm8
Celera943,249,530 - 43,269,004 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
PAFAH1B2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11117,144,284 - 117,176,894 (+)EnsemblGRCh38hg38GRCh38
GRCh3811117,144,287 - 117,178,173 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711117,015,003 - 117,048,889 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611116,520,250 - 116,544,024 (+)NCBINCBI36hg18NCBI36
Build 3411116,520,249 - 116,544,024NCBI
Celera11114,172,757 - 114,205,230 (+)NCBI
Cytogenetic Map11q23.3NCBI
HuRef11112,947,322 - 112,980,405 (+)NCBIHuRef
CHM1_111116,899,903 - 116,932,472 (+)NCBICHM1_1
Pafah1b2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2846,260,069 - 46,312,073 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl846,261,064 - 46,279,833 (-)Ensembl
Rnor_6.0850,256,969 - 50,310,043 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl850,259,248 - 50,277,797 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0848,883,712 - 48,934,692 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4848,938,556 - 48,957,109 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1848,947,322 - 48,965,875 (-)NCBI
Celera845,843,851 - 45,862,380 (-)NCBICelera
Cytogenetic Map8q22NCBI
Pafah1b2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541218,474,199 - 18,494,082 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541218,471,621 - 18,494,082 (+)NCBIChiLan1.0ChiLan1.0
PAFAH1B2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111115,911,803 - 115,944,358 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11115,911,803 - 115,944,351 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011111,978,368 - 112,005,064 (+)NCBIMhudiblu_PPA_v0panPan3
PAFAH1B2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.0516,361,852 - 16,392,824 (-)NCBI
Pafah1b2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494799,469,237 - 99,496,440 (+)NCBI
SpeTri2.0NW_0049365422,390,904 - 2,417,596 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAFAH1B2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl944,513,456 - 44,536,432 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1944,513,114 - 44,534,312 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2949,590,686 - 49,603,905 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAFAH1B2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11108,514,443 - 108,542,495 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1108,514,172 - 108,544,049 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604317,512,255 - 17,540,709 (-)NCBIVero_WHO_p1.0
Pafah1b2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478412,583,430 - 12,619,816 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AU021353  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38945,965,368 - 45,965,491UniSTSGRCm38
MGSCv37945,773,451 - 45,773,574UniSTSGRCm37
Celera943,249,587 - 43,249,710UniSTS
Cytogenetic Map9A5.2UniSTS
Whitehead/MRC_RH9499.67UniSTS
AI747451  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38945,968,559 - 45,968,687UniSTSGRCm38
MGSCv37945,776,642 - 45,776,770UniSTSGRCm37
Celera943,252,778 - 43,252,906UniSTS
Cytogenetic Map9A5.2UniSTS
Whitehead/MRC_RH9499.83UniSTS
Whitehead/MRC_RH9499.72UniSTS
RH141413  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38945,967,806 - 45,968,004UniSTSGRCm38
MGSCv37945,775,889 - 45,776,087UniSTSGRCm37
Celera943,252,025 - 43,252,223UniSTS
Cytogenetic Map9A5.2UniSTS
Pafah1b2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38945,968,569 - 45,968,690UniSTSGRCm38
MGSCv37945,776,652 - 45,776,773UniSTSGRCm37
Celera943,252,788 - 43,252,909UniSTS
Cytogenetic Map9A5.2UniSTS
cM Map9 UniSTS
Pafah1b2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9A5.2UniSTS
cM Map9 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91245867446458818Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91347987947479879Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91550045549500594Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91550045549500594Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91550045549500594Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91550045549500594Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91583833149838331Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91583833149838331Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91583833149838331Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91610000050100000Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91610000050100000Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91679834550798345Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91706754451067647Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined92003211054032229Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92024206654242196Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92039490154395074Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92039490154395074Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92039490154395074Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92039490154395074Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92094144454941444Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92500000069000000Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92567618959676285Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92567618959676285Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92567618959676285Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92567618959676285Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92688512460885255Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92688512460885255Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92688512460885255Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92733989761340026Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92938163163381774Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92938163163381774Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93014186664141979Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93082861764828723Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93252326366523557Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93254112166541246Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93259987266600121Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93297840266978536Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93319972567199840Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93406754473531973Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93512317869123299Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93512317869123299Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93512317869123299Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93682494749509211Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93703211050199840Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93791224471912244Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93819229172192291Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93819229172192291Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93819229172192291Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93949260173492601Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94050829851897370Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94050829874700643Mouse
11532693Sluc39_msusceptibility to lung cancer 39 (mouse)94073407848440176Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94089776474897921Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94357343177573577Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94357343177573577Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94452089278520980Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1181
Count of miRNA genes:608
Interacting mature miRNAs:756
Transcripts:ENSMUST00000172450
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB856076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY242419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY293328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA328016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ691104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U57747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000172450   ⟹   ENSMUSP00000127851
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl945,874,157 - 45,896,349 (-)Ensembl
GRCm38.p6 Ensembl945,962,859 - 45,985,051 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213853   ⟹   ENSMUSP00000149204
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl945,880,236 - 45,896,125 (-)Ensembl
GRCm38.p6 Ensembl945,968,938 - 45,984,827 (-)Ensembl
RefSeq Acc Id: ENSMUST00000214179   ⟹   ENSMUSP00000149819
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl945,879,982 - 45,896,692 (-)Ensembl
GRCm38.p6 Ensembl945,968,684 - 45,985,394 (-)Ensembl
RefSeq Acc Id: ENSMUST00000214996
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl945,894,876 - 45,896,133 (-)Ensembl
GRCm38.p6 Ensembl945,983,578 - 45,984,835 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215060   ⟹   ENSMUSP00000151196
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl945,880,083 - 45,896,122 (-)Ensembl
GRCm38.p6 Ensembl945,968,785 - 45,984,824 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215427   ⟹   ENSMUSP00000149409
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl945,886,374 - 45,895,635 (-)Ensembl
GRCm38.p6 Ensembl945,975,076 - 45,984,337 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216334   ⟹   ENSMUSP00000149998
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl945,889,954 - 45,896,125 (-)Ensembl
GRCm38.p6 Ensembl945,978,656 - 45,984,827 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217514   ⟹   ENSMUSP00000148931
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl945,886,402 - 45,923,988 (-)Ensembl
GRCm38.p6 Ensembl945,975,104 - 46,012,690 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217636   ⟹   ENSMUSP00000150013
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl945,886,431 - 45,896,081 (-)Ensembl
GRCm38.p6 Ensembl945,975,133 - 45,984,783 (-)Ensembl
RefSeq Acc Id: NM_001357238   ⟹   NP_001344167
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,609 - 45,896,692 (-)NCBI
GRCm38945,965,311 - 45,985,394 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357239   ⟹   NP_001344168
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,609 - 45,895,684 (-)NCBI
GRCm38945,965,311 - 45,984,386 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357240   ⟹   NP_001344169
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,609 - 45,895,684 (-)NCBI
GRCm38945,965,311 - 45,984,386 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357241   ⟹   NP_001344170
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,609 - 45,923,988 (-)NCBI
GRCm38945,965,311 - 46,012,690 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357243   ⟹   NP_001344172
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,609 - 45,896,169 (-)NCBI
GRCm38945,965,311 - 45,984,871 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357244   ⟹   NP_001344173
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,609 - 45,895,684 (-)NCBI
GRCm38945,965,311 - 45,984,386 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357245   ⟹   NP_001344174
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,609 - 45,895,684 (-)NCBI
GRCm38945,965,311 - 45,984,386 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357246   ⟹   NP_001344175
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,609 - 45,896,169 (-)NCBI
GRCm38945,965,311 - 45,984,871 (-)NCBI
Sequence:
RefSeq Acc Id: NM_008775   ⟹   NP_032801
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,609 - 45,896,169 (-)NCBI
GRCm38945,965,311 - 45,984,871 (-)NCBI
MGSCv37945,773,394 - 45,792,954 (-)RGD
Celera943,249,530 - 43,269,004 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030244123   ⟹   XP_030099983
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,613 - 45,895,862 (-)NCBI
GRCm38945,965,315 - 45,984,567 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244124   ⟹   XP_030099984
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,613 - 45,895,861 (-)NCBI
GRCm38945,965,315 - 45,984,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154684   ⟹   XP_036010577
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,613 - 45,895,862 (-)NCBI
RefSeq Acc Id: XM_036154685   ⟹   XP_036010578
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,876,613 - 45,896,350 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_032801   ⟸   NM_008775
- Peptide Label: isoform d
- UniProtKB: Q61206 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001344170   ⟸   NM_001357241
- Peptide Label: isoform d
RefSeq Acc Id: NP_001344167   ⟸   NM_001357238
- Peptide Label: isoform a
RefSeq Acc Id: NP_001344172   ⟸   NM_001357243
- Peptide Label: isoform d
RefSeq Acc Id: NP_001344175   ⟸   NM_001357246
- Peptide Label: isoform e
RefSeq Acc Id: NP_001344173   ⟸   NM_001357244
- Peptide Label: isoform d
RefSeq Acc Id: NP_001344169   ⟸   NM_001357240
- Peptide Label: isoform c
RefSeq Acc Id: NP_001344174   ⟸   NM_001357245
- Peptide Label: isoform d
RefSeq Acc Id: NP_001344168   ⟸   NM_001357239
- Peptide Label: isoform b
RefSeq Acc Id: XP_030099983   ⟸   XM_030244123
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030099984   ⟸   XM_030244124
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000150013   ⟸   ENSMUST00000217636
RefSeq Acc Id: ENSMUSP00000148931   ⟸   ENSMUST00000217514
RefSeq Acc Id: ENSMUSP00000127851   ⟸   ENSMUST00000172450
RefSeq Acc Id: ENSMUSP00000149204   ⟸   ENSMUST00000213853
RefSeq Acc Id: ENSMUSP00000149998   ⟸   ENSMUST00000216334
RefSeq Acc Id: ENSMUSP00000149409   ⟸   ENSMUST00000215427
RefSeq Acc Id: ENSMUSP00000151196   ⟸   ENSMUST00000215060
RefSeq Acc Id: ENSMUSP00000149819   ⟸   ENSMUST00000214179
RefSeq Acc Id: XP_036010578   ⟸   XM_036154685
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036010577   ⟸   XM_036154684
- Peptide Label: isoform X1
Protein Domains
SGNH_hydro

Promoters
RGD ID:6844085
Promoter ID:MM_KWN:57212
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_4Hour,   Spleen
Transcripts:NM_008775,   UC009PGY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36945,792,671 - 45,793,171 (-)MPROMDB
RGD ID:8669472
Promoter ID:EPDNEW_M12767
Type:initiation region
Name:Pafah1b2_1
Description:Mus musculus platelet-activating factor acetylhydrolase, isoform1b, subunit 2 , transcript variant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38945,984,829 - 45,984,889EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108415 AgrOrtholog
Ensembl Genes ENSMUSG00000003131 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000127851 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000148931 UniProtKB/TrEMBL
  ENSMUSP00000149204 UniProtKB/TrEMBL
  ENSMUSP00000149409 UniProtKB/TrEMBL
  ENSMUSP00000149819 UniProtKB/Swiss-Prot
  ENSMUSP00000149998 UniProtKB/TrEMBL
  ENSMUSP00000150013 UniProtKB/TrEMBL
  ENSMUSP00000151196 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000172450 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000213853 UniProtKB/TrEMBL
  ENSMUST00000214179 UniProtKB/Swiss-Prot
  ENSMUST00000215060 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000215427 UniProtKB/TrEMBL
  ENSMUST00000216334 UniProtKB/TrEMBL
  ENSMUST00000217514 UniProtKB/TrEMBL
  ENSMUST00000217636 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro SGNH_hydro UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SGNH_hydro_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18475 UniProtKB/Swiss-Prot
MGD MGI:108415 ENTREZGENE
NCBI Gene 18475 ENTREZGENE
Pfam Lipase_GDSL_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pafah1b2 PhenoGen
UniProt A0A1L1SQ76_MOUSE UniProtKB/TrEMBL
  A0A1L1SQV7_MOUSE UniProtKB/TrEMBL
  A0A1L1SRD0_MOUSE UniProtKB/TrEMBL
  A0A1L1SSP3_MOUSE UniProtKB/TrEMBL
  A0A1L1SSQ5_MOUSE UniProtKB/TrEMBL
  A0A1L1SVK0_MOUSE UniProtKB/TrEMBL
  PA1B2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BTA2_MOUSE UniProtKB/TrEMBL
  Q9CT35_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q6PKE6 UniProtKB/Swiss-Prot
  Q7TNP3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-03-06 Pafah1b2  platelet-activating factor acetylhydrolase, isoform 1b, subunit 2  2610005M20Rik  RIKEN cDNA 2610005M20 gene  Data Merged 737654 PROVISIONAL