Plod1 (procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Plod1 (procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1) Mus musculus
Analyze
Symbol: Plod1
Name: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
RGD ID: 733675
MGI Page MGI
Description: Predicted to enable several functions, including L-ascorbic acid binding activity; ferrous iron binding activity; and procollagen-lysine 5-dioxygenase activity. Predicted to be involved in collagen fibril organization; epidermis development; and peptidyl-lysine hydroxylation. Located in collagen-containing extracellular matrix. Part of catalytic complex. Is expressed in several structures, including alimentary system; brain; branchial arch; sensory organ; and skeleton. Used to study Ehlers-Danlos syndrome. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome kyphoscoliotic type 1. Orthologous to human PLOD1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410042F05Rik; AI854890; AV007929; LH; Lh1; Plod; procollagen-lysine,2-oxoglutarate 5-dioxygenase 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394147,994,210 - 148,021,233 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4147,994,210 - 148,021,224 (-)EnsemblGRCm39 Ensembl
GRCm384147,909,753 - 147,936,776 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4147,909,753 - 147,936,767 (-)EnsemblGRCm38mm10GRCm38
MGSCv374147,283,862 - 147,310,885 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364146,753,861 - 146,780,504 (-)NCBIMGSCv36mm8
Celera4150,174,511 - 150,201,195 (-)NCBICelera
Cytogenetic Map4E1NCBI
cM Map478.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. PITX2 regulates procollagen lysyl hydroxylase (PLOD) gene expression: implications for the pathology of Rieger syndrome. Hjalt TA, etal., J Cell Biol 2001 Feb 5;152(3):545-52.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Differential expression of procollagen lysine 2-oxoglutarate 5-deoxygenase and matrix metalloproteinase isoforms in hypothyroid rat ovary and disintegration of extracellular matrix. Saha SK, etal., Endocrinology. 2005 Jul;146(7):2963-75. Epub 2005 Apr 7.
Additional References at PubMed
PMID:1577494   PMID:7829080   PMID:8889548   PMID:10349636   PMID:10429951   PMID:11042159   PMID:11076861   PMID:11130984   PMID:11896059   PMID:12477932   PMID:12520002   PMID:12904583  
PMID:14610273   PMID:14681479   PMID:15377789   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16467571   PMID:16602821   PMID:16996725   PMID:17197443   PMID:18424556  
PMID:21267068   PMID:21873635   PMID:22159717   PMID:22906538   PMID:24457600   PMID:24996922   PMID:27119146   PMID:27626380   PMID:30550785   PMID:31138677   PMID:32325033   PMID:33631195  
PMID:34321999   PMID:34646388   PMID:36721170   PMID:36920550   PMID:37442135   PMID:37936548   PMID:38355793  


Genomics

Comparative Map Data
Plod1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394147,994,210 - 148,021,233 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4147,994,210 - 148,021,224 (-)EnsemblGRCm39 Ensembl
GRCm384147,909,753 - 147,936,776 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4147,909,753 - 147,936,767 (-)EnsemblGRCm38mm10GRCm38
MGSCv374147,283,862 - 147,310,885 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364146,753,861 - 146,780,504 (-)NCBIMGSCv36mm8
Celera4150,174,511 - 150,201,195 (-)NCBICelera
Cytogenetic Map4E1NCBI
cM Map478.57NCBI
PLOD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,934,717 - 11,975,537 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,934,205 - 11,975,538 (+)EnsemblGRCh38hg38GRCh38
GRCh37111,994,774 - 12,035,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,917,333 - 11,958,181 (+)NCBINCBI36Build 36hg18NCBI36
Build 34111,929,011 - 11,969,860NCBI
Celera111,108,411 - 11,149,258 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef111,149,615 - 11,190,362 (+)NCBIHuRef
CHM1_1111,982,590 - 12,023,381 (+)NCBICHM1_1
T2T-CHM13v2.0111,478,837 - 11,519,656 (+)NCBIT2T-CHM13v2.0
Plod1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85163,623,847 - 163,650,737 (-)NCBIGRCr8
mRatBN7.25158,340,674 - 158,367,581 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5158,340,490 - 158,367,620 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5161,057,429 - 161,084,332 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05162,884,948 - 162,911,870 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05162,841,286 - 162,868,216 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05164,720,629 - 164,747,071 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5164,720,587 - 164,747,083 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05168,379,092 - 168,405,534 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45164,987,252 - 165,012,581 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15164,997,439 - 165,022,772 (-)NCBI
Celera5156,623,980 - 156,649,807 (-)NCBICelera
Cytogenetic Map5q36NCBI
Plod1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554861,967,167 - 1,990,561 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554861,967,771 - 1,990,561 (-)NCBIChiLan1.0ChiLan1.0
PLOD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21216,260,905 - 216,301,738 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11214,904,976 - 214,948,943 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0110,684,608 - 10,725,376 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1111,900,881 - 11,941,308 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl111,900,881 - 11,941,308 (+)Ensemblpanpan1.1panPan2
PLOD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1284,320,529 - 84,343,562 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl284,320,529 - 84,343,562 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha280,853,098 - 80,876,054 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0284,981,087 - 85,004,061 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl284,980,603 - 85,004,654 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1281,730,741 - 81,753,653 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0282,730,771 - 82,753,652 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0283,796,533 - 83,819,467 (-)NCBIUU_Cfam_GSD_1.0
Plod1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505834,916,884 - 34,938,512 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936474746,922 - 765,585 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936474740,582 - 763,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLOD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl671,988,459 - 72,021,804 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1671,987,938 - 72,019,712 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2665,898,212 - 65,928,890 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLOD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120119,824,380 - 119,865,866 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605423,682,782 - 23,725,813 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plod1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248181,071,505 - 1,092,237 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248181,070,841 - 1,092,346 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plod1
1780 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1294
Count of miRNA genes:638
Interacting mature miRNAs:811
Transcripts:ENSMUST00000019199, ENSMUST00000105712, ENSMUST00000124041, ENSMUST00000124292, ENSMUST00000132075, ENSMUST00000149129
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
12738431Lfibq20_mliver fibrosis QTL 20 (mouse)4144699835148907426Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse

Markers in Region
AI854890  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384147,910,190 - 147,910,310UniSTSGRCm38
MGSCv374147,284,299 - 147,284,419UniSTSGRCm37
Celera4150,174,948 - 150,175,068UniSTS
Cytogenetic Map4E2UniSTS
cM Map476.5UniSTS
Whitehead/MRC_RH41901.83UniSTS
AV007929  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384147,909,817 - 147,909,964UniSTSGRCm38
MGSCv374147,283,926 - 147,284,073UniSTSGRCm37
Celera4150,174,575 - 150,174,722UniSTS
Cytogenetic Map4E2UniSTS
cM Map476.5UniSTS
Whitehead/MRC_RH41918.06UniSTS
Plod1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4E2UniSTS
cM Map476.5UniSTS
MARC_65451-65452:1185306539:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384147,921,050 - 147,921,473UniSTSGRCm38
MGSCv374147,295,159 - 147,295,582UniSTSGRCm37
Celera4150,185,593 - 150,186,016UniSTS
Cytogenetic Map4E2UniSTS
cM Map476.5UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF046782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI834765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL607066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY312508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU207406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000019199   ⟹   ENSMUSP00000019199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4147,994,210 - 148,021,224 (-)Ensembl
GRCm38.p6 Ensembl4147,909,753 - 147,936,767 (-)Ensembl
Ensembl Acc Id: ENSMUST00000105712   ⟹   ENSMUSP00000101337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4148,012,074 - 148,021,182 (-)Ensembl
GRCm38.p6 Ensembl4147,927,617 - 147,936,725 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124041
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4148,007,307 - 148,008,184 (-)Ensembl
GRCm38.p6 Ensembl4147,922,850 - 147,923,727 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4148,006,920 - 148,021,199 (-)Ensembl
GRCm38.p6 Ensembl4147,922,463 - 147,936,742 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132075
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4148,016,146 - 148,021,165 (-)Ensembl
GRCm38.p6 Ensembl4147,931,689 - 147,936,708 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149129   ⟹   ENSMUSP00000118857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4148,000,254 - 148,005,553 (-)Ensembl
GRCm38.p6 Ensembl4147,915,797 - 147,921,096 (-)Ensembl
RefSeq Acc Id: NM_011122   ⟹   NP_035252
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394147,994,210 - 148,021,233 (-)NCBI
GRCm384147,909,753 - 147,936,776 (-)ENTREZGENE
MGSCv374147,283,862 - 147,310,885 (-)RGD
Celera4150,174,511 - 150,201,195 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035252   ⟸   NM_011122
- Peptide Label: precursor
- UniProtKB: Q9R0E2 (UniProtKB/Swiss-Prot),   Q3UE11 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000101337   ⟸   ENSMUST00000105712
Ensembl Acc Id: ENSMUSP00000118857   ⟸   ENSMUST00000149129
Ensembl Acc Id: ENSMUSP00000019199   ⟸   ENSMUST00000019199
Protein Domains
Fe2OG dioxygenase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R0E2-F1-model_v2 AlphaFold Q9R0E2 1-728 view protein structure

Promoters
RGD ID:6835880
Promoter ID:MM_KWN:40788
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Spleen
Transcripts:OTTMUST00000024911
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364147,297,104 - 147,297,604 (-)MPROMDB
RGD ID:6835877
Promoter ID:MM_KWN:40789
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000097790,   ENSMUST00000105712,   ENSMUST00000105713,   OTTMUST00000024908,   OTTMUST00000024909,   OTTMUST00000064402
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364147,310,546 - 147,311,046 (-)MPROMDB
RGD ID:6885482
Promoter ID:EPDNEW_M6192
Type:initiation region
Name:Plod1_1
Description:Mus musculus procollagen-lysine, 2-oxoglutarate 5-dioxygenase1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384147,936,725 - 147,936,785EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99907 AgrOrtholog
Ensembl Genes ENSMUSG00000019055 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000019199 ENTREZGENE
  ENSMUST00000019199.14 UniProtKB/Swiss-Prot
  ENSMUST00000105712.2 UniProtKB/TrEMBL
  ENSMUST00000149129.3 UniProtKB/TrEMBL
Gene3D-CATH q2cbj1_9rhob like domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Collagen_mod_GT25 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IPNS-like_FE2OG_OXY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Oxoglu/Fe-dep_dioxygenase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pro_4_hyd_alph UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Procol_lys_dOase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18822 UniProtKB/Swiss-Prot
MGD MGI:99907 ENTREZGENE
NCBI Gene 18822 ENTREZGENE
PANTHER PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 2OG-FeII_Oxy UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Plod1 PhenoGen
PROSITE FE2OG_OXY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LYS_HYDROXYLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART P4Hc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Nucleotide-diphospho-sugar transferases UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A8Y5E6_MOUSE UniProtKB/TrEMBL
  F6WNR1_MOUSE UniProtKB/TrEMBL
  PLOD1_MOUSE UniProtKB/Swiss-Prot
  Q3TZN4_MOUSE UniProtKB/TrEMBL
  Q3UE11 ENTREZGENE, UniProtKB/TrEMBL
  Q3V2R7_MOUSE UniProtKB/TrEMBL
  Q91Z26_MOUSE UniProtKB/TrEMBL
  Q9R0E2 ENTREZGENE