Hnrnpk (heterogeneous nuclear ribonucleoprotein K) - Rat Genome Database

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Gene: Hnrnpk (heterogeneous nuclear ribonucleoprotein K) Mus musculus
Analyze
Symbol: Hnrnpk
Name: heterogeneous nuclear ribonucleoprotein K
RGD ID: 733486
MGI Page MGI
Description: Enables RNA binding activity. Acts upstream of or within negative regulation of mRNA splicing, via spliceosome; positive regulation of transcription by RNA polymerase II; and regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator. Located in cytoplasmic stress granule. Is expressed in several structures, including central nervous system; genitourinary system; hemolymphoid system gland; musculature; and sensory organ. Human ortholog(s) of this gene implicated in Raynaud disease. Orthologous to human HNRNPK (heterogeneous nuclear ribonucleoprotein K).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: hn; hnRNP K; Hnrpk; KBB; KBBP; MGC102032; NOVA
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18855   Gm4130   Gm6350   Gm7964  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,538,946 - 58,551,157 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1358,538,956 - 58,551,157 (-)EnsemblGRCm39 Ensembl
GRCm381358,391,132 - 58,403,343 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,391,142 - 58,403,343 (-)EnsemblGRCm38mm10GRCm38
MGSCv371358,493,312 - 58,503,877 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361358,401,574 - 58,412,139 (-)NCBIMGSCv36mm8
Celera1359,454,314 - 59,464,879 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1331.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,6-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
3',5'-cyclic UMP  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3-phenylprop-2-enal  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
7,12-dimethyltetraphene  (EXP)
actinomycin D  (ISO)
aldehydo-D-glucose  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
bufalin  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbon nanotube  (EXP,ISO)
CGP 52608  (ISO)
chloromethylisothiazolinone  (ISO)
clofibric acid  (ISO)
clothianidin  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
coumarin  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
cycloheximide  (ISO)
cyclophosphamide  (ISO)
D-glucose  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dihydroartemisinin  (ISO)
dioxygen  (EXP)
disodium selenite  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
fenvalerate  (ISO)
fipronil  (ISO)
folic acid  (EXP)
FR900359  (ISO)
fructose  (ISO)
gentamycin  (ISO)
glucose  (ISO)
glycine  (ISO)
glyphosate  (EXP)
haloperidol  (ISO)
hexadecanoic acid  (ISO)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
isobutanol  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
lovastatin  (EXP)
maneb  (EXP)
metformin  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosomorpholine  (ISO)
nickel atom  (EXP)
Nutlin-3  (ISO)
ochratoxin A  (EXP)
paclitaxel  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
propiconazole  (EXP)
quartz  (ISO)
quercetin  (ISO)
resveratrol  (EXP)
rottlerin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
sulforaphane  (ISO)
T-2 toxin  (ISO)
thapsigargin  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
valproic acid  (EXP,ISO)
warfarin  (EXP)
withaferin A  (ISO)
Withanone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
acute-phase response  (ISO)
camera-type eye development  (ISO)
cellular response to amino acid stimulus  (ISO)
cellular response to forskolin  (ISO)
cellular response to glucose stimulus  (ISO)
cellular response to insulin stimulus  (ISO)
cellular response to lead ion  (ISO)
cellular response to rapamycin  (ISO)
cerebellum development  (ISO)
cerebral cortex development  (ISO)
hippocampus development  (ISO)
kidney development  (ISO)
liver development  (ISO)
lung development  (ISO)
male gonad development  (ISO)
modulation of chemical synaptic transmission  (ISO)
mRNA processing  (IEA)
negative regulation of apoptotic process  (ISO)
negative regulation of branching morphogenesis of a nerve  (ISO)
negative regulation of DNA-templated transcription  (ISO,ISS)
negative regulation of gene expression  (ISO)
negative regulation of mRNA splicing, via spliceosome  (IMP)
negative regulation of protein binding  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
ovarian follicle development  (ISO)
peripheral nervous system development  (ISO)
positive regulation of dendrite extension  (ISO)
positive regulation of dendritic spine development  (ISO)
positive regulation of long-term synaptic potentiation  (ISO)
positive regulation of low-density lipoprotein receptor activity  (ISO)
positive regulation of myelination  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of protein localization to cell surface  (ISO)
positive regulation of receptor-mediated endocytosis  (IEA,ISO)
positive regulation of RNA splicing  (ISO)
positive regulation of synapse maturation  (ISO)
positive regulation of synaptic transmission  (ISO)
positive regulation of transcription by RNA polymerase II  (IGI)
random inactivation of X chromosome  (IEA)
regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  (IMP)
regulation of low-density lipoprotein particle clearance  (IEA,ISO)
regulation of mRNA splicing, via spliceosome  (IBA)
regulation of postsynapse organization  (ISO)
regulation of transcription by RNA polymerase II  (IBA,ISO)
regulatory ncRNA-mediated heterochromatin formation  (IEA)
response to activity  (ISO)
response to salt  (ISO)
RNA splicing  (IEA)
thymus development  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Antibodies against heterogeneous nuclear ribonucleoprotein K in patients with cardiac allograft vasculopathy. Acevedo MJ, etal., J Heart Lung Transplant. 2011 Sep;30(9):1051-9. doi: 10.1016/j.healun.2011.02.014. Epub 2011 Apr 13.
2. Heterogeneous nuclear ribonucleoprotein K: altered pattern of expression associated with diagnosis and prognosis of prostate cancer. Barboro P, etal., Br J Cancer. 2009 May 19;100(10):1608-16. doi: 10.1038/sj.bjc.6605057. Epub 2009 Apr 28.
3. Multitarget neuroprotection by quercetin: Changes in gene expression in two perinatal asphyxia models. Cardozo V, etal., Neurochem Int. 2021 Jul;147:105064. doi: 10.1016/j.neuint.2021.105064. Epub 2021 May 2.
4. Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
5. Regulation of neuroendocrine differentiation by AKT/hnRNPK/AR/beta-catenin signaling in prostate cancer cells. Ciarlo M, etal., Int J Cancer. 2012 Aug 1;131(3):582-90. doi: 10.1002/ijc.26402. Epub 2011 Oct 20.
6. The expression profile of RNA-binding proteins in primary and metastatic colorectal cancer: relationship of heterogeneous nuclear ribonucleoproteins with prognosis. Hope NR and Murray GI, Hum Pathol. 2011 Mar;42(3):393-402. doi: 10.1016/j.humpath.2010.08.006. Epub 2010 Dec 30.
7. Age-associated changes in hypothalamic and pituitary neuroendocrine gene expression in the rat. Kappeler L, etal., J Neuroendocrinol. 2003 Jun;15(6):592-601.
8. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
9. Identification of candidate lung cancer susceptibility genes in mouse using oligonucleotide arrays. Lemon WJ, etal., J Med Genet 2002 Sep;39(9):644-55.
10. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
11. MGDs mouse GO annotations MGD data from the GO Consortium
12. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
13. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. The spliceosome: design principles of a dynamic RNP machine. Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.
18. Heterogeneous nuclear ribonucleoprotein K modulates angiotensinogen gene expression in kidney cells. Wei CC, etal., J Biol Chem. 2006 Sep 1;281(35):25344-55. Epub 2006 Jul 12.
19. Proteomic identification of heterogeneous nuclear ribonucleoprotein K as a novel cold-associated autoantigen in patients with secondary Raynaud's phenomenon. Yang L, etal., Rheumatology (Oxford). 2015 Feb;54(2):349-58. doi: 10.1093/rheumatology/keu325. Epub 2014 Aug 28.
20. Presynaptic regulation of astroglial excitatory neurotransmitter transporter GLT1. Yang Y, etal., Neuron. 2009 Mar 26;61(6):880-94. doi: 10.1016/j.neuron.2009.02.010.
Additional References at PubMed
PMID:7862126   PMID:8021272   PMID:8889548   PMID:8910362   PMID:9185665   PMID:10349636   PMID:10809782   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:11557983  
PMID:11741984   PMID:12477932   PMID:12520002   PMID:12819125   PMID:12904583   PMID:14610273   PMID:14729942   PMID:15170860   PMID:15361071   PMID:15364910   PMID:15489334   PMID:15604097  
PMID:15671036   PMID:15782199   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16452087   PMID:16519889   PMID:17095106   PMID:17581920   PMID:18307411   PMID:18799693   PMID:19170760  
PMID:19423573   PMID:19880579   PMID:20548952   PMID:20673990   PMID:21677750   PMID:21873635   PMID:22359684   PMID:22570411   PMID:22673621   PMID:22794259   PMID:22960638   PMID:23086144  
PMID:23359859   PMID:23564449   PMID:23631859   PMID:23636947   PMID:23665319   PMID:23665500   PMID:23798440   PMID:23937658   PMID:24457600   PMID:24530304   PMID:24751651   PMID:25361975  
PMID:25713416   PMID:26336360   PMID:26412324   PMID:26426291   PMID:26638989   PMID:27430620   PMID:28324005   PMID:28378742   PMID:28555196   PMID:28671696   PMID:29055695   PMID:29220657  
PMID:29530978   PMID:29669786   PMID:29724888   PMID:29898807   PMID:30068389   PMID:30333137   PMID:30550785   PMID:30562941   PMID:30595499   PMID:30947518   PMID:31021473   PMID:31040226  
PMID:32325033   PMID:32434143   PMID:32541003   PMID:33269646   PMID:34133714   PMID:35008534   PMID:35455958   PMID:36114006   PMID:36127325   PMID:36293380   PMID:37142655   PMID:37494420  
PMID:37499769   PMID:37543308   PMID:37608075   PMID:38008244   PMID:38414246  


Genomics

Comparative Map Data
Hnrnpk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,538,946 - 58,551,157 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1358,538,956 - 58,551,157 (-)EnsemblGRCm39 Ensembl
GRCm381358,391,132 - 58,403,343 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,391,142 - 58,403,343 (-)EnsemblGRCm38mm10GRCm38
MGSCv371358,493,312 - 58,503,877 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361358,401,574 - 58,412,139 (-)NCBIMGSCv36mm8
Celera1359,454,314 - 59,464,879 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1331.04NCBI
HNRNPK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38983,968,083 - 83,980,615 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl983,968,083 - 83,980,631 (-)EnsemblGRCh38hg38GRCh38
GRCh37986,582,998 - 86,595,530 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36985,772,912 - 85,785,339 (-)NCBINCBI36Build 36hg18NCBI36
Build 34983,812,645 - 83,824,636NCBI
Celera957,154,011 - 57,166,581 (-)NCBICelera
Cytogenetic Map9q21.32NCBI
HuRef956,408,631 - 56,421,199 (-)NCBIHuRef
CHM1_1986,729,595 - 86,742,166 (-)NCBICHM1_1
T2T-CHM13v2.0996,118,364 - 96,130,896 (-)NCBIT2T-CHM13v2.0
Hnrnpk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8176,269,302 - 6,280,429 (+)NCBIGRCr8
mRatBN7.2176,262,936 - 6,275,001 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,262,998 - 6,274,997 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx176,288,534 - 6,297,617 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0177,821,878 - 7,830,965 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,284,906 - 6,293,989 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0176,664,730 - 6,676,753 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl176,665,659 - 6,676,654 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0178,868,934 - 8,881,126 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41712,196,630 - 12,205,720 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11712,196,629 - 12,205,720 (+)NCBI
Celera176,375,531 - 6,384,621 (+)NCBICelera
Cytogenetic Map17p14NCBI
Hnrnpk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554323,246,092 - 3,257,774 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554323,246,090 - 3,257,774 (+)NCBIChiLan1.0ChiLan1.0
HNRNPK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21183,127,645 - 83,139,337 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1983,133,588 - 83,145,280 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0940,898,593 - 40,911,159 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1983,324,235 - 83,336,884 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl983,324,238 - 83,336,756 (-)Ensemblpanpan1.1panPan2
HNRNPK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1175,499,334 - 75,511,525 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl175,499,393 - 75,511,425 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha176,149,689 - 76,161,319 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0175,800,635 - 75,812,819 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl175,800,674 - 75,812,816 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1175,615,073 - 75,626,694 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0175,377,881 - 75,389,506 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0176,080,753 - 76,092,378 (+)NCBIUU_Cfam_GSD_1.0
Hnrnpk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947122,185,614 - 122,197,809 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936828828,837 - 838,720 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936828827,660 - 839,088 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1030,975,702 - 30,987,956 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11030,975,639 - 30,987,955 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21035,102,731 - 35,115,113 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11294,768,403 - 94,789,957 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1294,768,480 - 94,789,743 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603883,198,762 - 83,211,203 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnpk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248097,538,568 - 7,548,272 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hnrnpk
478 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3825
Count of miRNA genes:778
Interacting mature miRNAs:1055
Transcripts:ENSMUST00000043269, ENSMUST00000116403, ENSMUST00000175847, ENSMUST00000175939, ENSMUST00000176207, ENSMUST00000176257, ENSMUST00000176269, ENSMUST00000176305, ENSMUST00000176359, ENSMUST00000176558, ENSMUST00000176609, ENSMUST00000176725, ENSMUST00000176797, ENSMUST00000176849, ENSMUST00000176888, ENSMUST00000177019, ENSMUST00000177051, ENSMUST00000177060, ENSMUST00000177117, ENSMUST00000177377, ENSMUST00000177497
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse

Markers in Region
Hnrpk  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381391,261,718 - 91,262,374UniSTSGRCm38
GRCm38783,756,352 - 83,757,012UniSTSGRCm38
MGSCv371391,401,323 - 91,401,979UniSTSGRCm37
MGSCv37790,904,862 - 90,905,522UniSTSGRCm37
Celera781,167,697 - 81,168,357UniSTS
Celera1394,892,080 - 94,892,736UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map13B1UniSTS
cM Map13 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001301340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001301341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001301343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001301344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001301345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV367088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE993983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY794631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU604547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000043269   ⟹   ENSMUSP00000039269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,539,053 - 58,550,316 (-)Ensembl
GRCm38.p6 Ensembl1358,391,239 - 58,402,502 (-)Ensembl
Ensembl Acc Id: ENSMUST00000116403   ⟹   ENSMUSP00000112104
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,538,956 - 58,551,157 (-)Ensembl
GRCm38.p6 Ensembl1358,391,142 - 58,403,343 (-)Ensembl
Ensembl Acc Id: ENSMUST00000175847   ⟹   ENSMUSP00000134837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,542,979 - 58,550,301 (-)Ensembl
GRCm38.p6 Ensembl1358,395,165 - 58,402,487 (-)Ensembl
Ensembl Acc Id: ENSMUST00000175939
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,546,540 - 58,550,316 (-)Ensembl
GRCm38.p6 Ensembl1358,398,726 - 58,402,502 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176207   ⟹   ENSMUSP00000135354
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,539,151 - 58,550,463 (-)Ensembl
GRCm38.p6 Ensembl1358,391,337 - 58,402,649 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,539,774 - 58,542,599 (-)Ensembl
GRCm38.p6 Ensembl1358,391,960 - 58,394,785 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,543,079 - 58,545,831 (-)Ensembl
GRCm38.p6 Ensembl1358,395,265 - 58,398,017 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176305   ⟹   ENSMUSP00000135305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,542,475 - 58,549,917 (-)Ensembl
GRCm38.p6 Ensembl1358,394,661 - 58,402,103 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,539,936 - 58,541,789 (-)Ensembl
GRCm38.p6 Ensembl1358,392,122 - 58,393,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176558   ⟹   ENSMUSP00000135623
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,544,851 - 58,549,930 (-)Ensembl
GRCm38.p6 Ensembl1358,397,037 - 58,402,116 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176609
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,542,417 - 58,544,879 (-)Ensembl
GRCm38.p6 Ensembl1358,394,603 - 58,397,065 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,542,504 - 58,544,760 (-)Ensembl
GRCm38.p6 Ensembl1358,394,690 - 58,396,946 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176797   ⟹   ENSMUSP00000135867
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,540,047 - 58,543,012 (-)Ensembl
GRCm38.p6 Ensembl1358,392,233 - 58,395,198 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176849   ⟹   ENSMUSP00000135342
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,542,162 - 58,549,956 (-)Ensembl
GRCm38.p6 Ensembl1358,394,348 - 58,402,142 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176888
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,542,354 - 58,543,534 (-)Ensembl
GRCm38.p6 Ensembl1358,394,540 - 58,395,720 (-)Ensembl
Ensembl Acc Id: ENSMUST00000177019   ⟹   ENSMUSP00000135647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,539,053 - 58,550,278 (-)Ensembl
GRCm38.p6 Ensembl1358,391,239 - 58,402,464 (-)Ensembl
Ensembl Acc Id: ENSMUST00000177051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,539,764 - 58,541,682 (-)Ensembl
GRCm38.p6 Ensembl1358,391,950 - 58,393,868 (-)Ensembl
Ensembl Acc Id: ENSMUST00000177060   ⟹   ENSMUSP00000135407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,543,009 - 58,550,321 (-)Ensembl
GRCm38.p6 Ensembl1358,395,195 - 58,402,507 (-)Ensembl
Ensembl Acc Id: ENSMUST00000177117   ⟹   ENSMUSP00000135109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,543,084 - 58,545,831 (-)Ensembl
GRCm38.p6 Ensembl1358,395,270 - 58,398,017 (-)Ensembl
Ensembl Acc Id: ENSMUST00000177377
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,543,703 - 58,549,924 (-)Ensembl
GRCm38.p6 Ensembl1358,395,889 - 58,402,110 (-)Ensembl
Ensembl Acc Id: ENSMUST00000177497   ⟹   ENSMUSP00000135833
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,539,053 - 58,545,869 (-)Ensembl
GRCm38.p6 Ensembl1358,391,239 - 58,398,055 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223822   ⟹   ENSMUSP00000153705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,547,707 - 58,549,869 (-)Ensembl
GRCm38.p6 Ensembl1358,399,893 - 58,402,055 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224030   ⟹   ENSMUSP00000153416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,543,473 - 58,549,207 (-)Ensembl
GRCm38.p6 Ensembl1358,395,659 - 58,401,393 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224182   ⟹   ENSMUSP00000153253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,539,049 - 58,550,330 (-)Ensembl
GRCm38.p6 Ensembl1358,391,235 - 58,402,516 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224342   ⟹   ENSMUSP00000153651
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,543,452 - 58,549,384 (-)Ensembl
GRCm38.p6 Ensembl1358,395,638 - 58,401,570 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224524   ⟹   ENSMUSP00000153054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,543,046 - 58,549,079 (-)Ensembl
GRCm38.p6 Ensembl1358,395,232 - 58,401,265 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224531
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,540,073 - 58,541,898 (-)Ensembl
GRCm38.p6 Ensembl1358,392,259 - 58,394,084 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,541,505 - 58,542,510 (-)Ensembl
GRCm38.p6 Ensembl1358,393,691 - 58,394,696 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224836   ⟹   ENSMUSP00000153523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,543,456 - 58,550,299 (-)Ensembl
GRCm38.p6 Ensembl1358,395,642 - 58,402,485 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225031   ⟹   ENSMUSP00000153320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,542,572 - 58,549,929 (-)Ensembl
GRCm38.p6 Ensembl1358,394,758 - 58,402,115 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225176   ⟹   ENSMUSP00000153487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,542,555 - 58,549,728 (-)Ensembl
GRCm38.p6 Ensembl1358,394,741 - 58,401,914 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225674   ⟹   ENSMUSP00000152935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,539,053 - 58,549,955 (-)Ensembl
GRCm38.p6 Ensembl1358,391,239 - 58,402,141 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,541,093 - 58,541,984 (-)Ensembl
GRCm38.p6 Ensembl1358,393,279 - 58,394,170 (-)Ensembl
Ensembl Acc Id: ENSMUST00000226015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1358,540,934 - 58,541,703 (-)Ensembl
GRCm38.p6 Ensembl1358,393,120 - 58,393,889 (-)Ensembl
RefSeq Acc Id: NM_001301340   ⟹   NP_001288269
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,946 - 58,550,326 (-)NCBI
GRCm381358,391,132 - 58,402,512 (-)NCBI
Celera1359,453,495 - 59,465,706 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001301341   ⟹   NP_001288270
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,946 - 58,551,157 (-)NCBI
GRCm381358,391,132 - 58,403,343 (-)NCBI
Celera1359,453,495 - 59,465,706 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001301343   ⟹   NP_001288272
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,946 - 58,549,983 (-)NCBI
GRCm381358,391,132 - 58,402,169 (-)NCBI
Celera1359,453,495 - 59,465,706 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001301344   ⟹   NP_001288273
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,946 - 58,550,326 (-)NCBI
GRCm381358,391,132 - 58,402,512 (-)NCBI
Celera1359,453,495 - 59,465,706 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001301345   ⟹   NP_001288274
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,946 - 58,550,326 (-)NCBI
GRCm381358,391,132 - 58,402,512 (-)NCBI
Celera1359,453,495 - 59,465,706 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001360490   ⟹   NP_001347419
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,956 - 58,549,931 (-)NCBI
GRCm381358,391,142 - 58,402,117 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001360491   ⟹   NP_001347420
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,956 - 58,550,326 (-)NCBI
GRCm381358,391,142 - 58,402,512 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001360493   ⟹   NP_001347422
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,956 - 58,550,326 (-)NCBI
GRCm381358,391,142 - 58,402,512 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001360494   ⟹   NP_001347423
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,956 - 58,549,931 (-)NCBI
GRCm381358,391,142 - 58,402,117 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001360495   ⟹   NP_001347424
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,956 - 58,549,931 (-)NCBI
GRCm381358,391,142 - 58,402,117 (-)NCBI
Sequence:
RefSeq Acc Id: NM_025279   ⟹   NP_079555
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,946 - 58,550,326 (-)NCBI
GRCm381358,391,132 - 58,402,512 (-)NCBI
MGSCv371358,493,312 - 58,503,877 (-)RGD
Celera1359,453,495 - 59,465,706 (-)NCBI
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153501
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,956 - 58,550,326 (-)NCBI
GRCm381358,391,142 - 58,402,512 (-)NCBI
Sequence:
RefSeq Acc Id: NR_153502
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,956 - 58,550,326 (-)NCBI
GRCm381358,391,142 - 58,402,512 (-)NCBI
Sequence:
RefSeq Acc Id: NR_153503
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,956 - 58,549,931 (-)NCBI
GRCm381358,391,142 - 58,402,117 (-)NCBI
Sequence:
RefSeq Acc Id: NR_153504
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,538,956 - 58,550,326 (-)NCBI
GRCm381358,391,142 - 58,402,512 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006517103   ⟹   XP_006517166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,539,048 - 58,549,354 (-)NCBI
GRCm381358,391,234 - 58,401,536 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006517104   ⟹   XP_006517167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,539,052 - 58,549,314 (-)NCBI
GRCm381358,391,234 - 58,401,548 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001288269 (Get FASTA)   NCBI Sequence Viewer  
  NP_001288270 (Get FASTA)   NCBI Sequence Viewer  
  NP_001288272 (Get FASTA)   NCBI Sequence Viewer  
  NP_001288273 (Get FASTA)   NCBI Sequence Viewer  
  NP_001288274 (Get FASTA)   NCBI Sequence Viewer  
  NP_001347419 (Get FASTA)   NCBI Sequence Viewer  
  NP_001347420 (Get FASTA)   NCBI Sequence Viewer  
  NP_001347422 (Get FASTA)   NCBI Sequence Viewer  
  NP_001347423 (Get FASTA)   NCBI Sequence Viewer  
  NP_001347424 (Get FASTA)   NCBI Sequence Viewer  
  NP_079555 (Get FASTA)   NCBI Sequence Viewer  
  XP_006517166 (Get FASTA)   NCBI Sequence Viewer  
  XP_006517167 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH06694 (Get FASTA)   NCBI Sequence Viewer  
  AAH89328 (Get FASTA)   NCBI Sequence Viewer  
  ACC69193 (Get FASTA)   NCBI Sequence Viewer  
  BAB27614 (Get FASTA)   NCBI Sequence Viewer  
  BAC25705 (Get FASTA)   NCBI Sequence Viewer  
  BAC34601 (Get FASTA)   NCBI Sequence Viewer  
  BAC37389 (Get FASTA)   NCBI Sequence Viewer  
  BAC40368 (Get FASTA)   NCBI Sequence Viewer  
  BAE22563 (Get FASTA)   NCBI Sequence Viewer  
  BAE29905 (Get FASTA)   NCBI Sequence Viewer  
  BAE30613 (Get FASTA)   NCBI Sequence Viewer  
  BAE31602 (Get FASTA)   NCBI Sequence Viewer  
  BAE35915 (Get FASTA)   NCBI Sequence Viewer  
  BAE36070 (Get FASTA)   NCBI Sequence Viewer  
  BAE38921 (Get FASTA)   NCBI Sequence Viewer  
  BAE39121 (Get FASTA)   NCBI Sequence Viewer  
  BAE39657 (Get FASTA)   NCBI Sequence Viewer  
  BAE40731 (Get FASTA)   NCBI Sequence Viewer  
  BAE40851 (Get FASTA)   NCBI Sequence Viewer  
  EDL41262 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000039269
  ENSMUSP00000039269.8
  ENSMUSP00000112104
  ENSMUSP00000112104.3
  ENSMUSP00000134837.2
  ENSMUSP00000135109.2
  ENSMUSP00000135305.2
  ENSMUSP00000135342.2
  ENSMUSP00000135354
  ENSMUSP00000135354.2
  ENSMUSP00000135407.2
  ENSMUSP00000135623.2
  ENSMUSP00000135647
  ENSMUSP00000135647.2
  ENSMUSP00000135833
  ENSMUSP00000135833.2
  ENSMUSP00000135867.2
  ENSMUSP00000152935
  ENSMUSP00000152935.2
  ENSMUSP00000153054.2
  ENSMUSP00000153253
  ENSMUSP00000153253.2
  ENSMUSP00000153320.2
  ENSMUSP00000153416.2
  ENSMUSP00000153487.2
  ENSMUSP00000153523.2
  ENSMUSP00000153651.2
  ENSMUSP00000153705.2
GenBank Protein P61979 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_079555   ⟸   NM_025279
- Peptide Label: isoform 2
- UniProtKB: Q8BGQ8 (UniProtKB/Swiss-Prot),   P61979 (UniProtKB/Swiss-Prot),   Q3TJ38 (UniProtKB/TrEMBL),   Q3TUA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517167   ⟸   XM_006517104
- Peptide Label: isoform X1
- UniProtKB: Q5FWJ5 (UniProtKB/TrEMBL),   Q3TL71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517166   ⟸   XM_006517103
- Peptide Label: isoform X1
- UniProtKB: Q5FWJ5 (UniProtKB/TrEMBL),   Q3TL71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001288270   ⟸   NM_001301341
- Peptide Label: isoform 1
- UniProtKB: Q5FWJ5 (UniProtKB/TrEMBL),   Q3TL71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001288274   ⟸   NM_001301345
- Peptide Label: isoform 4
- UniProtKB: Q3U6X2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001288273   ⟸   NM_001301344
- Peptide Label: isoform 3
- UniProtKB: B2M1R6 (UniProtKB/TrEMBL),   Q3TL71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001288269   ⟸   NM_001301340
- Peptide Label: isoform 1
- UniProtKB: Q5FWJ5 (UniProtKB/TrEMBL),   Q3TL71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001288272   ⟸   NM_001301343
- Peptide Label: isoform 1
- UniProtKB: Q5FWJ5 (UniProtKB/TrEMBL),   Q3TL71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001347422   ⟸   NM_001360493
- Peptide Label: isoform 6
- UniProtKB: Q3TJ38 (UniProtKB/TrEMBL),   Q3TUA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347420   ⟸   NM_001360491
- Peptide Label: isoform 5
- UniProtKB: Q3TL71 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347424   ⟸   NM_001360495
- Peptide Label: isoform 4
- UniProtKB: Q3U6X2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347423   ⟸   NM_001360494
- Peptide Label: isoform 3
- UniProtKB: B2M1R6 (UniProtKB/TrEMBL),   Q3TL71 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347419   ⟸   NM_001360490
- Peptide Label: isoform 2
- UniProtKB: Q8BGQ8 (UniProtKB/Swiss-Prot),   P61979 (UniProtKB/Swiss-Prot),   Q3TJ38 (UniProtKB/TrEMBL),   Q3TUA1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000153705   ⟸   ENSMUST00000223822
Ensembl Acc Id: ENSMUSP00000135647   ⟸   ENSMUST00000177019
Ensembl Acc Id: ENSMUSP00000135407   ⟸   ENSMUST00000177060
Ensembl Acc Id: ENSMUSP00000135109   ⟸   ENSMUST00000177117
Ensembl Acc Id: ENSMUSP00000135833   ⟸   ENSMUST00000177497
Ensembl Acc Id: ENSMUSP00000153320   ⟸   ENSMUST00000225031
Ensembl Acc Id: ENSMUSP00000153487   ⟸   ENSMUST00000225176
Ensembl Acc Id: ENSMUSP00000152935   ⟸   ENSMUST00000225674
Ensembl Acc Id: ENSMUSP00000153054   ⟸   ENSMUST00000224524
Ensembl Acc Id: ENSMUSP00000153523   ⟸   ENSMUST00000224836
Ensembl Acc Id: ENSMUSP00000153253   ⟸   ENSMUST00000224182
Ensembl Acc Id: ENSMUSP00000153416   ⟸   ENSMUST00000224030
Ensembl Acc Id: ENSMUSP00000153651   ⟸   ENSMUST00000224342
Ensembl Acc Id: ENSMUSP00000135867   ⟸   ENSMUST00000176797
Ensembl Acc Id: ENSMUSP00000135342   ⟸   ENSMUST00000176849
Ensembl Acc Id: ENSMUSP00000135305   ⟸   ENSMUST00000176305
Ensembl Acc Id: ENSMUSP00000135623   ⟸   ENSMUST00000176558
Ensembl Acc Id: ENSMUSP00000135354   ⟸   ENSMUST00000176207
Ensembl Acc Id: ENSMUSP00000134837   ⟸   ENSMUST00000175847
Ensembl Acc Id: ENSMUSP00000039269   ⟸   ENSMUST00000043269
Ensembl Acc Id: ENSMUSP00000112104   ⟸   ENSMUST00000116403
Protein Domains
K Homology   KH   ROK N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P61979-F1-model_v2 AlphaFold P61979 1-463 view protein structure

Promoters
RGD ID:8680534
Promoter ID:EPDNEW_M18298
Type:multiple initiation site
Name:Hnrnpk_2
Description:Mus musculus heterogeneous nuclear ribonucleoprotein K , transcriptvariant 11, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18300  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381358,402,136 - 58,402,196EPDNEW
RGD ID:8680538
Promoter ID:EPDNEW_M18300
Type:initiation region
Name:Hnrnpk_1
Description:Mus musculus heterogeneous nuclear ribonucleoprotein K , transcriptvariant 11, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18298  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381358,402,485 - 58,402,545EPDNEW
RGD ID:6824068
Promoter ID:MM_KWN:14322
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   MEF_B4,   MEF_B6
Transcripts:UC007QTW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361358,499,041 - 58,500,137 (-)MPROMDB
RGD ID:6824066
Promoter ID:MM_KWN:14323
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day4,   BoneMarrow_0Hour,   MEF_B6
Transcripts:UC007QTS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361358,500,881 - 58,502,117 (-)MPROMDB
RGD ID:6824071
Promoter ID:MM_KWN:14324
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_2Hour,   ES_Cell,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109849,   ENSMUST00000116404,   NM_025279,   UC007QTT.1,   UC007QTU.1,   UC007QTZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361358,503,426 - 58,504,532 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99894 AgrOrtholog
Ensembl Genes ENSMUSG00000021546 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043269 ENTREZGENE
  ENSMUST00000043269.14 UniProtKB/Swiss-Prot
  ENSMUST00000116403 ENTREZGENE
  ENSMUST00000116403.9 UniProtKB/Swiss-Prot
  ENSMUST00000175847.8 UniProtKB/TrEMBL
  ENSMUST00000176207 ENTREZGENE
  ENSMUST00000176207.8 UniProtKB/Swiss-Prot
  ENSMUST00000176305.8 UniProtKB/TrEMBL
  ENSMUST00000176558.2 UniProtKB/TrEMBL
  ENSMUST00000176797.8 UniProtKB/TrEMBL
  ENSMUST00000176849.8 UniProtKB/TrEMBL
  ENSMUST00000177019 ENTREZGENE
  ENSMUST00000177019.8 UniProtKB/TrEMBL
  ENSMUST00000177060.8 UniProtKB/TrEMBL
  ENSMUST00000177117.2 UniProtKB/TrEMBL
  ENSMUST00000177497 ENTREZGENE
  ENSMUST00000177497.8 UniProtKB/TrEMBL
  ENSMUST00000223822.2 UniProtKB/TrEMBL
  ENSMUST00000224030.2 UniProtKB/TrEMBL
  ENSMUST00000224182 ENTREZGENE
  ENSMUST00000224182.2 UniProtKB/Swiss-Prot
  ENSMUST00000224342.2 UniProtKB/TrEMBL
  ENSMUST00000224524.2 UniProtKB/TrEMBL
  ENSMUST00000224836.2 UniProtKB/TrEMBL
  ENSMUST00000225031.2 UniProtKB/TrEMBL
  ENSMUST00000225176.2 UniProtKB/TrEMBL
  ENSMUST00000225674 ENTREZGENE
  ENSMUST00000225674.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.310.210 UniProtKB/TrEMBL
InterPro KH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_prok-type UniProtKB/TrEMBL
  ROK_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15387 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:99894 ENTREZGENE
NCBI Gene 15387 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH DOMAIN CONTAINING RNA BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ROKNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hnrnpk PhenoGen
PROSITE KH_TYPE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00322 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54814 UniProtKB/TrEMBL
UniProt A0A286YCM2_MOUSE UniProtKB/TrEMBL
  A0A286YDH1_MOUSE UniProtKB/TrEMBL
  A0A286YDM3_MOUSE UniProtKB/TrEMBL
  A0A286YE41_MOUSE UniProtKB/TrEMBL
  A0A286YEC4_MOUSE UniProtKB/TrEMBL
  B2M1R6 ENTREZGENE, UniProtKB/TrEMBL
  H3BJ43_MOUSE UniProtKB/TrEMBL
  H3BJS9_MOUSE UniProtKB/TrEMBL
  H3BK96_MOUSE UniProtKB/TrEMBL
  H3BKD0_MOUSE UniProtKB/TrEMBL
  H3BKI8_MOUSE UniProtKB/TrEMBL
  H3BLL4_MOUSE UniProtKB/TrEMBL
  H3BLP7_MOUSE UniProtKB/TrEMBL
  HNRPK_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TG17_MOUSE UniProtKB/TrEMBL
  Q3TJ38 ENTREZGENE, UniProtKB/TrEMBL
  Q3TL71 ENTREZGENE, UniProtKB/TrEMBL
  Q3TUA1 ENTREZGENE, UniProtKB/TrEMBL
  Q3U6X2 ENTREZGENE, UniProtKB/TrEMBL
  Q3U9Q3_MOUSE UniProtKB/TrEMBL
  Q5FWJ5 ENTREZGENE, UniProtKB/TrEMBL
  Q8BGQ8 ENTREZGENE
  Q8BT23_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q07244 UniProtKB/Swiss-Prot
  Q15671 UniProtKB/Swiss-Prot
  Q60577 UniProtKB/Swiss-Prot
  Q8BGQ8 UniProtKB/Swiss-Prot
  Q922Y7 UniProtKB/Swiss-Prot
  Q96J62 UniProtKB/Swiss-Prot