Rimbp2 (RIMS binding protein 2) - Rat Genome Database

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Gene: Rimbp2 (RIMS binding protein 2) Mus musculus
Analyze
Symbol: Rimbp2
Name: RIMS binding protein 2
RGD ID: 733346
MGI Page MGI
Description: Enables voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels and voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential. A structural constituent of presynaptic active zone. Involved in regulation of calcium-dependent activation of synaptic vesicle fusion and regulation of presynaptic membrane potential. Is active in calyx of Held; glutamatergic synapse; and presynaptic active zone cytoplasmic component. Orthologous to human RIMBP2 (RIMS binding protein 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A930033C01Rik; mKIAA0318; RIM-BP2; RIMS-binding protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395128,834,852 - 129,030,636 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5128,834,855 - 129,030,550 (-)EnsemblGRCm39 Ensembl
GRCm385128,757,788 - 128,953,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5128,757,791 - 128,953,486 (-)EnsemblGRCm38mm10GRCm38
MGSCv375129,266,276 - 129,459,237 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365129,072,499 - 129,268,070 (-)NCBIMGSCv36mm8
MGSCv365127,024,716 - 127,087,061 (-)NCBIMGSCv36mm8
Celera5125,792,301 - 125,891,098 (-)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map567.91NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15747579   PMID:16141072   PMID:16141073   PMID:17114649   PMID:17124501   PMID:17855024  
PMID:18799693   PMID:21267068   PMID:21873635   PMID:26402606   PMID:27537484   PMID:27671655   PMID:28671696   PMID:28874522   PMID:29967030   PMID:30973865   PMID:31535974   PMID:31848688  
PMID:31927188   PMID:32325033   PMID:32755572   PMID:33539324   PMID:34353898   PMID:34767769   PMID:37142655   PMID:38329474   PMID:38355793  


Genomics

Comparative Map Data
Rimbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395128,834,852 - 129,030,636 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5128,834,855 - 129,030,550 (-)EnsemblGRCm39 Ensembl
GRCm385128,757,788 - 128,953,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5128,757,791 - 128,953,486 (-)EnsemblGRCm38mm10GRCm38
MGSCv375129,266,276 - 129,459,237 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365129,072,499 - 129,268,070 (-)NCBIMGSCv36mm8
MGSCv365127,024,716 - 127,087,061 (-)NCBIMGSCv36mm8
Celera5125,792,301 - 125,891,098 (-)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map567.91NCBI
RIMBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812130,396,133 - 130,716,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12130,396,133 - 130,768,228 (-)EnsemblGRCh38hg38GRCh38
GRCh3712130,880,678 - 131,200,844 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612129,446,634 - 129,568,363 (-)NCBINCBI36Build 36hg18NCBI36
Celera12130,494,857 - 130,616,297 (-)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12127,866,583 - 127,988,111 (-)NCBIHuRef
CHM1_112130,700,550 - 130,823,261 (-)NCBICHM1_1
T2T-CHM13v2.012130,433,406 - 130,754,746 (-)NCBIT2T-CHM13v2.0
Rimbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81233,383,646 - 33,582,259 (+)NCBIGRCr8
mRatBN7.21227,747,615 - 27,946,256 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1227,747,980 - 27,956,763 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1228,962,795 - 29,085,556 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01229,573,367 - 29,696,125 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01228,556,444 - 28,754,898 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01231,393,229 - 31,605,567 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1231,530,699 - 31,620,760 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01233,319,996 - 33,529,398 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41228,809,987 - 29,012,169 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11228,851,920 - 28,872,012 (+)NCBI
Celera1229,442,290 - 29,640,007 (+)NCBICelera
Cytogenetic Map12q13NCBI
Rimbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554821,332,778 - 1,428,748 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554821,326,628 - 1,431,358 (+)NCBIChiLan1.0ChiLan1.0
RIMBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210138,456,797 - 138,782,376 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112138,453,316 - 138,848,361 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012128,009,575 - 128,338,009 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112132,222,052 - 132,538,029 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12132,225,056 - 132,305,103 (-)Ensemblpanpan1.1panPan2
RIMBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1261,519,489 - 1,744,011 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl261,645,591 - 1,744,020 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,719,625 - 1,944,681 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0261,765,398 - 1,991,479 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl261,765,218 - 2,010,409 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1261,827,412 - 1,926,413 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0261,798,409 - 2,023,366 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0261,706,066 - 1,932,688 (+)NCBIUU_Cfam_GSD_1.0
Rimbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118123,214,028 - 123,318,323 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366601,435,019 - 1,482,958 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366601,433,535 - 1,601,912 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIMBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1424,394,750 - 24,722,235 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11424,394,793 - 24,722,237 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21426,227,904 - 26,295,566 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RIMBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111125,770,331 - 126,170,664 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037118,919,840 - 119,239,707 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rimbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474727,108,508 - 27,144,190 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474727,107,951 - 27,245,303 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rimbp2
12667 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:88
Interacting mature miRNAs:90
Transcripts:ENSMUST00000111346
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
13464142Bbaa2a_mB.burgdorferi-associated arthritis 2a (mouse)5128571199130052971Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse

Markers in Region
UniSTS:224537  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385128,888,289 - 128,888,447UniSTSGRCm38
MGSCv375129,394,164 - 129,394,322UniSTSGRCm37
Celera5125,921,583 - 125,921,741UniSTS
Cytogenetic Map5G1.3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001310733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC111089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC116715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC151100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC151101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP762839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF745262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ115058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000111346   ⟹   ENSMUSP00000106978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5128,837,465 - 129,030,426 (-)Ensembl
GRCm38.p6 Ensembl5128,760,401 - 128,953,362 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196085   ⟹   ENSMUSP00000143725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5128,837,465 - 129,030,119 (-)Ensembl
GRCm38.p6 Ensembl5128,760,401 - 128,953,055 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5128,914,780 - 129,030,097 (-)Ensembl
GRCm38.p6 Ensembl5128,837,716 - 128,953,033 (-)Ensembl
Ensembl Acc Id: ENSMUST00000198941   ⟹   ENSMUSP00000142455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5128,834,859 - 128,897,086 (-)Ensembl
GRCm38.p6 Ensembl5128,757,795 - 128,820,022 (-)Ensembl
Ensembl Acc Id: ENSMUST00000199537   ⟹   ENSMUSP00000143276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5128,834,855 - 128,897,133 (-)Ensembl
GRCm38.p6 Ensembl5128,757,791 - 128,820,069 (-)Ensembl
Ensembl Acc Id: ENSMUST00000199737   ⟹   ENSMUSP00000142712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5128,883,478 - 128,954,130 (-)Ensembl
GRCm38.p6 Ensembl5128,806,414 - 128,877,066 (-)Ensembl
Ensembl Acc Id: ENSMUST00000200470   ⟹   ENSMUSP00000143099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5128,837,746 - 129,030,550 (-)Ensembl
GRCm38.p6 Ensembl5128,760,682 - 128,953,486 (-)Ensembl
Ensembl Acc Id: ENSMUST00000238334   ⟹   ENSMUSP00000158659
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5128,837,868 - 128,922,735 (-)Ensembl
GRCm38.p6 Ensembl5128,760,804 - 128,845,671 (-)Ensembl
Ensembl Acc Id: ENSMUST00000239036   ⟹   ENSMUSP00000159134
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5128,835,871 - 128,838,444 (-)Ensembl
GRCm38.p6 Ensembl5128,758,807 - 128,761,380 (-)Ensembl
RefSeq Acc Id: NM_001081388   ⟹   NP_001074857
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,834,852 - 129,030,550 (-)NCBI
GRCm385128,757,788 - 128,953,486 (-)NCBI
MGSCv375129,266,276 - 129,459,237 (-)RGD
Celera5125,792,301 - 125,891,098 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001310733   ⟹   NP_001297662
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,834,852 - 129,030,550 (-)NCBI
GRCm385128,757,788 - 128,953,486 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378900   ⟹   NP_001365829
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,834,855 - 129,030,124 (-)NCBI
GRCm385128,757,791 - 128,953,060 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006504288   ⟹   XP_006504351
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,834,855 - 129,030,632 (-)NCBI
GRCm385128,757,791 - 128,953,569 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006504289   ⟹   XP_006504352
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,835,580 - 129,030,632 (-)NCBI
GRCm385128,758,516 - 128,953,569 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006504293   ⟹   XP_006504356
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,835,580 - 129,030,628 (-)NCBI
GRCm385128,758,516 - 128,953,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006504294   ⟹   XP_006504357
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,835,580 - 128,954,584 (-)NCBI
GRCm385128,758,516 - 128,877,541 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006504295   ⟹   XP_006504358
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,835,580 - 129,030,635 (-)NCBI
GRCm385128,758,516 - 128,953,572 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006504296   ⟹   XP_006504359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,834,855 - 129,030,636 (-)NCBI
GRCm385128,757,791 - 128,953,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006504297   ⟹   XP_006504360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,834,855 - 129,030,633 (-)NCBI
GRCm385128,757,791 - 128,953,570 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011240839   ⟹   XP_011239141
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,835,580 - 128,924,055 (-)NCBI
GRCm385128,758,516 - 128,953,569 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320870   ⟹   XP_017176359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,834,855 - 129,030,636 (-)NCBI
GRCm385128,757,791 - 128,953,644 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320871   ⟹   XP_017176360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,835,580 - 129,030,613 (-)NCBI
GRCm385128,758,516 - 128,953,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254432   ⟹   XP_030110292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,835,580 - 129,030,613 (-)NCBI
GRCm385128,758,516 - 128,953,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165094   ⟹   XP_036020987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,835,580 - 128,981,279 (-)NCBI
Sequence:
RefSeq Acc Id: XR_377055
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395128,834,855 - 129,030,622 (-)NCBI
GRCm385128,784,805 - 128,953,558 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001074857   ⟸   NM_001081388
- Peptide Label: isoform 1
- UniProtKB: E9QPF5 (UniProtKB/Swiss-Prot),   B9EKT4 (UniProtKB/Swiss-Prot),   Q80U40 (UniProtKB/Swiss-Prot),   D3YXR8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504359   ⟸   XM_006504296
- Peptide Label: isoform X4
- UniProtKB: A0A571BDA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504360   ⟸   XM_006504297
- Peptide Label: isoform X6
- UniProtKB: A0A571BDA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504358   ⟸   XM_006504295
- Peptide Label: isoform X3
- UniProtKB: A0A571BDA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504351   ⟸   XM_006504288
- Peptide Label: isoform X1
- UniProtKB: A0A571BDA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504352   ⟸   XM_006504289
- Peptide Label: isoform X1
- UniProtKB: A0A571BDA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504356   ⟸   XM_006504293
- Peptide Label: isoform X2
- UniProtKB: A0A571BDA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504357   ⟸   XM_006504294
- Peptide Label: isoform X2
- UniProtKB: A0A571BDA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011239141   ⟸   XM_011240839
- Peptide Label: isoform X1
- UniProtKB: A0A571BDA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297662   ⟸   NM_001310733
- Peptide Label: isoform 2
- UniProtKB: E9QPF5 (UniProtKB/Swiss-Prot),   B9EKT4 (UniProtKB/Swiss-Prot),   Q80U40 (UniProtKB/Swiss-Prot),   A0A0G2JFB0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176359   ⟸   XM_017320870
- Peptide Label: isoform X5
- UniProtKB: A0A571BDA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176360   ⟸   XM_017320871
- Peptide Label: isoform X7
- UniProtKB: Q80U40 (UniProtKB/Swiss-Prot),   E9QPF5 (UniProtKB/Swiss-Prot),   B9EKT4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030110292   ⟸   XM_030254432
- Peptide Label: isoform X8
- UniProtKB: A0A0G2JGW5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365829   ⟸   NM_001378900
- Peptide Label: isoform 3
- UniProtKB: Q80U40 (UniProtKB/Swiss-Prot),   E9QPF5 (UniProtKB/Swiss-Prot),   B9EKT4 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000142455   ⟸   ENSMUST00000198941
Ensembl Acc Id: ENSMUSP00000106978   ⟸   ENSMUST00000111346
Ensembl Acc Id: ENSMUSP00000143276   ⟸   ENSMUST00000199537
Ensembl Acc Id: ENSMUSP00000142712   ⟸   ENSMUST00000199737
Ensembl Acc Id: ENSMUSP00000159134   ⟸   ENSMUST00000239036
Ensembl Acc Id: ENSMUSP00000158659   ⟸   ENSMUST00000238334
Ensembl Acc Id: ENSMUSP00000143725   ⟸   ENSMUST00000196085
Ensembl Acc Id: ENSMUSP00000143099   ⟸   ENSMUST00000200470
RefSeq Acc Id: XP_036020987   ⟸   XM_036165094
- Peptide Label: isoform X1
- UniProtKB: A0A571BDA2 (UniProtKB/TrEMBL)
Protein Domains
Fibronectin type-III   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80U40-F1-model_v2 AlphaFold Q80U40 1-1072 view protein structure

Promoters
RGD ID:6888162
Promoter ID:EPDNEW_M7532
Type:initiation region
Name:Rimbp2_2
Description:Mus musculus RIMS binding protein 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7533  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385128,820,111 - 128,820,171EPDNEW
RGD ID:6888164
Promoter ID:EPDNEW_M7533
Type:initiation region
Name:Rimbp2_1
Description:Mus musculus RIMS binding protein 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7532  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385128,908,657 - 128,908,717EPDNEW
RGD ID:6837887
Promoter ID:MM_KWN:44189
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC008ZSK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365129,294,316 - 129,294,816 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443235 AgrOrtholog
Ensembl Genes ENSMUSG00000029420 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000111346 ENTREZGENE
  ENSMUST00000196085 ENTREZGENE
  ENSMUST00000199537.5 UniProtKB/Swiss-Prot
  ENSMUST00000200470 ENTREZGENE
  ENSMUST00000238334 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
  SH3 Domains UniProtKB/Swiss-Prot
InterPro FN3_dom UniProtKB/Swiss-Prot
  FN3_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  RIM-BP_SH3_2 UniProtKB/Swiss-Prot
  RIM-BP_SH3_3 UniProtKB/Swiss-Prot
  RIMBP1/2/3 UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
KEGG Report mmu:231760 UniProtKB/Swiss-Prot
MGD MGI:2443235 ENTREZGENE
NCBI Gene 231760 ENTREZGENE
PANTHER PTHR14234 UniProtKB/Swiss-Prot
  PTHR14234:SF18 UniProtKB/Swiss-Prot
Pfam fn3 UniProtKB/Swiss-Prot
  SH3_2 UniProtKB/Swiss-Prot
  SH3_9 UniProtKB/Swiss-Prot
PhenoGen Rimbp2 PhenoGen
PRINTS SH3DOMAIN UniProtKB/Swiss-Prot
PROSITE FN3 UniProtKB/Swiss-Prot
  SH3 UniProtKB/Swiss-Prot
SMART FN3 UniProtKB/Swiss-Prot
  SH3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot
  SSF50044 UniProtKB/Swiss-Prot
UniProt A0A0G2JEC0_MOUSE UniProtKB/TrEMBL
  A0A0G2JFB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JGW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A571BDA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A5F8MPV6_MOUSE UniProtKB/TrEMBL
  B9EKT4 ENTREZGENE
  D3YXR8 ENTREZGENE, UniProtKB/TrEMBL
  E9QPF5 ENTREZGENE
  Q80U40 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B9EKT4 UniProtKB/Swiss-Prot
  E9QPF5 UniProtKB/Swiss-Prot