Sgta (small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Sgta (small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha) Mus musculus
Analyze
Symbol: Sgta
Name: small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
RGD ID: 733259
MGI Page MGI
Description: Predicted to enable BAT3 complex binding activity; molecular adaptor activity; and protein dimerization activity. Predicted to be involved in several processes, including establishment of protein localization to membrane; protein complex oligomerization; and regulation of proteolysis involved in protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of TRC complex. Predicted to be active in membrane and presynapse. Predicted to be extrinsic component of synaptic vesicle membrane. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and skin. Orthologous to human SGTA (small glutamine rich tetratricopeptide repeat co-chaperone alpha).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5330427H01Rik; AI194281; alpha-SGT; D10Ertd190; D10Ertd190e; MGC6336; Sg; Sgt; small glutamine-rich tetratricopeptide repeat (TPR) containing protein; small glutamine-rich tetratricopeptide repeat-containing protein alpha; Stg
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm5178  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391080,879,905 - 80,896,105 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1080,879,909 - 80,896,015 (-)EnsemblGRCm39 Ensembl
GRCm381081,044,071 - 81,060,271 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,044,075 - 81,060,181 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,506,818 - 80,522,899 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361080,447,202 - 80,463,283 (-)NCBIMGSCv36mm8
Celera1082,064,172 - 82,080,253 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. A brain-specific isoform of small glutamine-rich tetratricopeptide repeat-containing protein binds to Hsc70 and the cysteine string protein. Tobaben S, etal., J Biol Chem 2003 Oct 3;278(40):38376-83. Epub 2003 Jul 23.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:16602821   PMID:18799693   PMID:21151134   PMID:21267068   PMID:21873635   PMID:24194600   PMID:26169395   PMID:27358191   PMID:27626380   PMID:28700664   PMID:32325033   PMID:33757575  
PMID:38355793  


Genomics

Comparative Map Data
Sgta
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391080,879,905 - 80,896,105 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1080,879,909 - 80,896,015 (-)EnsemblGRCm39 Ensembl
GRCm381081,044,071 - 81,060,271 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,044,075 - 81,060,181 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,506,818 - 80,522,899 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361080,447,202 - 80,463,283 (-)NCBIMGSCv36mm8
Celera1082,064,172 - 82,080,253 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
SGTA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,754,715 - 2,783,273 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,754,715 - 2,783,362 (-)EnsemblGRCh38hg38GRCh38
GRCh37192,754,713 - 2,783,271 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,705,712 - 2,734,354 (-)NCBINCBI36Build 36hg18NCBI36
Build 34192,705,711 - 2,734,354NCBI
Celera192,691,048 - 2,719,238 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef192,524,858 - 2,552,844 (-)NCBIHuRef
CHM1_1192,754,295 - 2,782,944 (-)NCBICHM1_1
T2T-CHM13v2.0192,730,001 - 2,758,560 (-)NCBIT2T-CHM13v2.0
Sgta
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,304,381 - 9,321,157 (+)NCBIGRCr8
mRatBN7.278,653,681 - 8,670,460 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,653,778 - 8,670,458 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx711,538,583 - 11,554,536 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0713,414,080 - 13,430,033 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,280,593 - 11,296,537 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,521,949 - 11,538,691 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,521,998 - 11,539,319 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0711,689,292 - 11,706,055 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4710,137,703 - 10,153,619 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1710,137,690 - 10,154,362 (+)NCBI
Celera76,841,267 - 6,857,190 (+)NCBICelera
Cytogenetic Map7q11NCBI
Sgta
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,031,229 - 5,052,389 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,025,038 - 5,051,810 (-)NCBIChiLan1.0ChiLan1.0
SGTA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2207,148,672 - 7,177,779 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,380,570 - 6,410,739 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0191,778,728 - 1,808,199 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1192,736,565 - 2,763,440 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl192,736,565 - 2,763,440 (-)Ensemblpanpan1.1panPan2
SGTA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12056,432,688 - 56,451,438 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2056,441,724 - 56,450,215 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2056,238,159 - 56,245,619 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02057,166,157 - 57,184,860 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2057,168,049 - 57,184,848 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12056,228,236 - 56,235,697 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02056,713,119 - 56,720,579 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,913,486 - 56,920,947 (+)NCBIUU_Cfam_GSD_1.0
Sgta
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118216,218,214 - 216,235,331 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365881,598,164 - 1,616,599 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365881,599,453 - 1,616,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGTA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl275,879,058 - 75,896,277 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1275,879,081 - 75,896,279 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2276,391,320 - 76,408,510 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SGTA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.162,534,398 - 2,562,306 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl62,534,376 - 2,548,604 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660816,041,444 - 6,071,775 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgta
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248285,834,586 - 5,843,528 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248285,832,274 - 5,854,472 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sgta
461 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:477
Count of miRNA genes:322
Interacting mature miRNAs:383
Transcripts:ENSMUST00000005067
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse

Markers in Region
RH135919  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381081,044,292 - 81,044,489UniSTSGRCm38
MGSCv371080,507,037 - 80,507,234UniSTSGRCm37
Celera1082,064,391 - 82,064,588UniSTS
Cytogenetic Map10C1UniSTS
cM Map1043.0UniSTS
RH126405  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381081,044,170 - 81,044,403UniSTSGRCm38
MGSCv371080,506,915 - 80,507,148UniSTSGRCm37
Celera1082,064,269 - 82,064,502UniSTS
Cytogenetic Map10C1UniSTS
cM Map1043.0UniSTS
Whitehead/MRC_RH10921.5UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001358549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_024499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC152500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY084509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY143324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY287841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD775676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000005067   ⟹   ENSMUSP00000005067
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1080,879,909 - 80,896,012 (-)Ensembl
GRCm38.p6 Ensembl1081,044,075 - 81,060,178 (-)Ensembl
Ensembl Acc Id: ENSMUST00000218208   ⟹   ENSMUSP00000151949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1080,879,911 - 80,896,012 (-)Ensembl
GRCm38.p6 Ensembl1081,044,077 - 81,060,178 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219126
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1080,882,313 - 80,885,882 (-)Ensembl
GRCm38.p6 Ensembl1081,046,479 - 81,050,048 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1080,883,218 - 80,885,708 (-)Ensembl
GRCm38.p6 Ensembl1081,047,384 - 81,049,874 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219401   ⟹   ENSMUSP00000151345
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1080,884,673 - 80,895,949 (-)Ensembl
GRCm38.p6 Ensembl1081,048,839 - 81,060,115 (-)Ensembl
Ensembl Acc Id: ENSMUST00000220202
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1080,886,573 - 80,896,015 (-)Ensembl
GRCm38.p6 Ensembl1081,050,739 - 81,060,181 (-)Ensembl
Ensembl Acc Id: ENSMUST00000220317   ⟹   ENSMUSP00000151678
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1080,885,087 - 80,895,978 (-)Ensembl
GRCm38.p6 Ensembl1081,049,253 - 81,060,144 (-)Ensembl
RefSeq Acc Id: NM_001358549   ⟹   NP_001345478
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391080,879,905 - 80,896,010 (-)NCBI
GRCm381081,044,071 - 81,060,176 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358550   ⟹   NP_001345479
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391080,879,905 - 80,896,105 (-)NCBI
GRCm381081,044,071 - 81,060,271 (-)NCBI
Sequence:
RefSeq Acc Id: NM_024499   ⟹   NP_078775
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391080,879,905 - 80,896,105 (-)NCBI
GRCm381081,044,071 - 81,060,271 (-)NCBI
MGSCv371080,506,818 - 80,522,899 (-)RGD
Celera1082,064,172 - 82,080,253 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513877   ⟹   XP_006513940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391080,879,905 - 80,896,030 (-)NCBI
GRCm381081,044,071 - 81,060,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245176   ⟹   XP_030101036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391080,879,905 - 80,896,016 (-)NCBI
GRCm381081,044,071 - 81,060,168 (-)NCBI
Sequence:
RefSeq Acc Id: NP_078775   ⟸   NM_024499
- Peptide Label: isoform 1
- UniProtKB: Q8BGA6 (UniProtKB/Swiss-Prot),   Q99L52 (UniProtKB/Swiss-Prot),   Q8BJU0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513940   ⟸   XM_006513877
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001345479   ⟸   NM_001358550
- Peptide Label: isoform 2
- UniProtKB: Q3TN35 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001345478   ⟸   NM_001358549
- Peptide Label: isoform 1
- UniProtKB: Q8BJU0 (UniProtKB/Swiss-Prot),   Q8BGA6 (UniProtKB/Swiss-Prot),   Q99L52 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030101036   ⟸   XM_030245176
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000151949   ⟸   ENSMUST00000218208
Ensembl Acc Id: ENSMUSP00000151345   ⟸   ENSMUST00000219401
Ensembl Acc Id: ENSMUSP00000005067   ⟸   ENSMUST00000005067
Ensembl Acc Id: ENSMUSP00000151678   ⟸   ENSMUST00000220317
Protein Domains
SGTA homodimerisation

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BJU0-F1-model_v2 AlphaFold Q8BJU0 1-315 view protein structure

Promoters
RGD ID:6846779
Promoter ID:MM_ACW:5414
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:SGTA.ISEP07-UNSPLICED,   SGTA.JSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361080,508,896 - 80,509,396 (-)MPROMDB
RGD ID:6846780
Promoter ID:MM_ACW:5415
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:SGTA.FSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361080,513,491 - 80,513,991 (-)MPROMDB
RGD ID:6819907
Promoter ID:MM_KWN:4936
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000005067,   UC007GFU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361080,522,601 - 80,523,302 (-)MPROMDB
RGD ID:8672738
Promoter ID:EPDNEW_M14400
Type:initiation region
Name:Sgta_1
Description:Mus musculus small glutamine-rich tetratricopeptide repeat -containing,alpha , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381081,060,183 - 81,060,243EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1098703 AgrOrtholog
Ensembl Genes ENSMUSG00000004937 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000005067 ENTREZGENE
  ENSMUST00000005067.6 UniProtKB/Swiss-Prot
  ENSMUST00000218208 ENTREZGENE
  ENSMUST00000218208.2 UniProtKB/Swiss-Prot
  ENSMUST00000219401.2 UniProtKB/TrEMBL
  ENSMUST00000220317.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Immunoglobulin FC, subunit C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro SGT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SGTA_dimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:52551 UniProtKB/Swiss-Prot
MGD MGI:1098703 ENTREZGENE
NCBI Gene 52551 ENTREZGENE
PANTHER LD24721P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SGTA_dimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sgta PhenoGen
PROSITE TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P6P1_MOUSE UniProtKB/TrEMBL
  A0A1W2P7I5_MOUSE UniProtKB/TrEMBL
  Q3TN35 ENTREZGENE, UniProtKB/TrEMBL
  Q8BGA6 ENTREZGENE
  Q8BJU0 ENTREZGENE
  Q99L52 ENTREZGENE
  SGTA_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BGA6 UniProtKB/Swiss-Prot
  Q99L52 UniProtKB/Swiss-Prot